Rh7CG116500
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005997
Physical Location & Seq
Reverse (-)
8969697 .. 8973928
4232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG116500.1

Sequence Viewer

Length: 1710 bp
ATGGGGTGTTGTAGATCATTTCTGCTACTCTTTTTTGCATTGGGTTCTTTATTTTTGGGTAGTCACCAACTACCATCTTCTCAAACCCAAGTGCTTCTACAGCTAAGGAAGCATTTAGAGTACCCAAGCCAGTTGGAAATTTGGAAGGATCATACCGTAGATTTCTGCTCTGTATCTTCGTCTGCACAAGTAAACATCACATGCTTGGACAACCTTGTAATTGAGCTCAGCATCAAGGGTGATAAGCCAGCTAAAGTTAGTGGCTTCAATGGGTTTTCAATTCCAGGCCAGATTTTATCAGAGGCCTTCTCATTGGATTCTTTTGTTACTACTTTGGCAAGACTAAGCAGCTTGAAAGTCCTCAGTCTTGTCTCTTTGGGAATCTGGGGTCAACTTCCAGACAAAATTCATAGGTTGACTTCCCTTGAATATCTGGATTTGAGTTCAAACTTTCTCTTTGGTTCAGTCCCACCTCGGATTTCTGCAATGGTGAAGCTTCAAACTCTTGTAATGGATAACAACTTCTTGAATGGCACTGTTCCCAATTGGTTTGGTTCACTATCCAATCTTTCAACTCTAAGCTTTAGAAACAACCAGTTGAAAGGTCCATTACTTGATCTCAGTAGCTTAGGTAGCTTACAAGTGCTTGATTTGAGCGTGAACAAGTTGAATGCTGTATTGCCCTCAATGCCAAAACGGTTGGTCGTGCTTGCCCTCAGCAACAATTCCTTCTCTGGTGAGATTCCTCAGCAATATCGGAAACTAAGCGCGCTTCAACACCTTGACATGTCATTCAACTCACTTACAGGCACACCTCTTGCTGCATTGTTCTCATTGCCAAATATCAGCTACTTGAATTTGGCTTCGAATTTGTTAAGTGGTTCACTTCCGAGCCATTTAAGCTGTGTCATTAAACTTGATTACATTGATATATCGAACAATAGATTGACAGGTGACTTGCCTTCTTGTTTGGGAACTAAATCAGGACAGAGAGTTGTTAAGTTTGGTGGGAATTGCTTATCTGTTAGTATGAAAAATCAGCATCCACAGTCATATTGCAATGTAGTAGTCAGTCCAAAGGAGAGACAAACTGGAGGAAAAGAAGTAGGAATCTTGGTGGGTGTGATAGTTGGAATACTTGTGCTTTTAGTGCTTCTGGTTTTGAGCTGTATCATTTTGTGTAGAAGATATCTCCCTCGGGGAGTGTCGGAGCAGCATTTGCTGCATAAGCCAGAGCAAGATCACCCAGTAGCAGTAGGGTTCTCCACCGAGATGCTAACAAATGCAAGGTTTATTTCACAAGCAGCCAAGGCAGGCATGCTAGGTCTCCCAGGATGCCGAACTTTTTCATTAGAGGAGTTGGCGGACATTACCAGAAATTTTGACAACTCTGCCTTTTTGGGTGAAGGTTCATACGGGAAGCTTTACAAAGGTAGACTAGAAAATGGGATCCAAGTTGTTATAAGGTGCCTGCAAGTGTCAAAGAAATACACAATTCGAAATCTTAAACTCCGGTTGGATTTGCTTTCCAAGCTTCGTCACCCGCATTTAGTATGCCTTTTAGGACACTGCCTTGACGGTGGTGGAGATGATTACAGTGTGAACAAGGTGTATCTTGTATCTGAGTATGTGGCAAATGGGACCTTTCGTGCTAAACTCTCTGGTAAGCTTGGAAAACAAGCAATATGTAATCTTCTCACTGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

569

Amino Acids

62.2

Weight (kDa)

9.14

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 110 - 314 3e-12 Leucine-rich repeat region
LRR_8 PF13855 165 - 223 8.8e-06 Leucine rich repeat
LRR_8 PF13855 233 - 292 3.1e-07 Leucine rich repeat
LRR_8 PF13855 258 - 316 2.8e-06 Leucine rich repeat
Pkinase PF00069 464 - 556 1.5e-06 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 466 - 556 4.5e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1463
AccB1I GGYRCC 1 cut(s) 1467
AccI GTMKAC 1 cut(s) 1435
AccII CGCG 1 cut(s) 770
AciI CCGC 2 cut(s) 1364, 1544
AclWI GGATC 3 cut(s) 156, 1444, 1457
AcsI RAATTY 6 cut(s) 138, 405, 856, 868, 1378, 1704
AfaI GTAC 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 786
AjnI CCWGG 2 cut(s) 283, 1330
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 3 cut(s) 376, 1078, 1331
AlwI GGATC 3 cut(s) 156, 1444, 1457
Ama87I CYCGRG 1 cut(s) 1197
AoxI GGCC 2 cut(s) 286, 303
ApeKI GCWGC 5 cut(s) 348, 821, 1213, 1222, 1304
ApoI RAATTY 6 cut(s) 138, 405, 856, 868, 1378, 1704
Asp700I GAANNNNTTC 1 cut(s) 1345
AspLEI GCGC 2 cut(s) 770, 772
AspS9I GGNCC 2 cut(s) 605, 1641
AsuHPI GGTGA 8 cut(s) 56, 251, 502, 749, 965, 1235, 1415, 1532
AsuII TTCGAA 2 cut(s) 866, 1498
AvaI CYCGRG 1 cut(s) 1197
AvaII GGWCC 2 cut(s) 605, 1641
BamHI GGATCC 1 cut(s) 1449
BanI GGYRCC 1 cut(s) 1467
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BbvCI CCTCAGC 2 cut(s) 716, 747
BbvI GCAGC 5 cut(s) 360, 808, 1209, 1225, 1316
BccI CCATC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 285, 1332
BcoDI GTCTC 3 cut(s) 376, 1078, 1331
BfaI CTAG 2 cut(s) 1322, 1439
BfmI CTRYAG 1 cut(s) 98
BisI GCNGC 5 cut(s) 349, 822, 1214, 1223, 1305
BlpI GCTNAGC 1 cut(s) 227
BlsI GCNGC 5 cut(s) 350, 823, 1215, 1224, 1306
Bme1390I CCNGG 2 cut(s) 285, 1332
Bme18I GGWCC 2 cut(s) 605, 1641
BmeT110I CYCGRG 1 cut(s) 1197
BmgT120I GGNCC 2 cut(s) 605, 1641
BmiI GGNNCC 3 cut(s) 1451, 1469, 1642
BmrFI CCNGG 2 cut(s) 285, 1332
BmrI ACTGGG 1 cut(s) 1241
BmsI GCATC 4 cut(s) 240, 1051, 1263, 1325
BmuI ACTGGG 1 cut(s) 1241
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpmI CTGGAG 1 cut(s) 1113
Bpu10I CCTNAGC 4 cut(s) 104, 628, 716, 747
Bpu1102I GCTNAGC 1 cut(s) 227
Bpu14I TTCGAA 2 cut(s) 866, 1498
BsaI GGTCTC 1 cut(s) 1331
BsaJI CCNNGG 4 cut(s) 473, 1196, 1308, 1330
BsaWI WCCGGW 1 cut(s) 1512
Bse1I ACTGG 4 cut(s) 130, 595, 1096, 1247
Bse3DI GCAATG 3 cut(s) 492, 833, 1066
BseBI CCWGG 2 cut(s) 285, 1332
BseDI CCNNGG 4 cut(s) 473, 1196, 1308, 1330
BseGI GGATG 2 cut(s) 1042, 1340
BseMI GCAATG 3 cut(s) 492, 833, 1066
BseMII CTCAG 6 cut(s) 241, 376, 634, 730, 761, 1614
BseNI ACTGG 4 cut(s) 130, 595, 1096, 1247
BsePI GCGCGC 1 cut(s) 768
BseRI GAGGAG 1 cut(s) 1370
BseXI GCAGC 5 cut(s) 360, 808, 1209, 1225, 1316
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 770
BshFI GGCC 2 cut(s) 288, 305
BshNI GGYRCC 1 cut(s) 1467
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 1197
BsiSI CCGG 1 cut(s) 1513
BslFI GGGAC 2 cut(s) 452, 1654
BsmAI GTCTC 3 cut(s) 376, 1078, 1331
BsmFI GGGAC 2 cut(s) 452, 1654
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 2 cut(s) 288, 305
Bso31I GGTCTC 1 cut(s) 1331
BsoBI CYCGRG 1 cut(s) 1197
Bsp119I TTCGAA 2 cut(s) 866, 1498
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 5 cut(s) 14, 148, 616, 1240, 1449
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 2 cut(s) 1364, 1544
BspANI GGCC 2 cut(s) 288, 305
BspCNI CTCAG 6 cut(s) 240, 375, 633, 729, 760, 1615
BspFNI CGCG 1 cut(s) 770
BspLI GGNNCC 3 cut(s) 1451, 1469, 1642
BspPI GGATC 3 cut(s) 156, 1444, 1457
BspT104I TTCGAA 2 cut(s) 866, 1498
BspT107I GGYRCC 1 cut(s) 1467
BspTNI GGTCTC 1 cut(s) 1331
BsrDI GCAATG 3 cut(s) 492, 833, 1066
BsrI ACTGG 4 cut(s) 130, 595, 1096, 1247
BssECI CCNNGG 4 cut(s) 473, 1196, 1308, 1330
BssHII GCGCGC 1 cut(s) 768
BssMI GATC 5 cut(s) 14, 148, 616, 1240, 1449
BssT1I CCWWGG 1 cut(s) 1308
Bst2UI CCWGG 2 cut(s) 285, 1332
Bst4CI ACNGT 6 cut(s) 157, 538, 699, 1050, 1580, 1598
BstAPI GCANNNNNTGC 2 cut(s) 1219, 1222
BstBI TTCGAA 2 cut(s) 866, 1498
BstC8I GCNNGC 6 cut(s) 249, 711, 770, 1315, 1319, 1472
BstF5I GGATG 2 cut(s) 1042, 1340
BstFNI CGCG 1 cut(s) 770
BstHHI GCGC 2 cut(s) 770, 772
BstKTI GATC 5 cut(s) 17, 151, 619, 1243, 1452
BstMAI GTCTC 3 cut(s) 376, 1078, 1331
BstMBI GATC 5 cut(s) 14, 148, 616, 1240, 1449
BstNI CCWGG 2 cut(s) 285, 1332
BstNSI RCATGY 3 cut(s) 204, 790, 1321
BstSCI CCNGG 2 cut(s) 283, 1330
BstSFI CTRYAG 1 cut(s) 98
BstUI CGCG 1 cut(s) 770
BstV1I GCAGC 5 cut(s) 360, 808, 1209, 1225, 1316
BstX2I RGATCY 1 cut(s) 1449
BstYI RGATCY 1 cut(s) 1449
BsuRI GGCC 2 cut(s) 288, 305
BtsCI GGATG 2 cut(s) 1042, 1340
BtsI GCAGTG 1 cut(s) 1567
BtsIMutI CAGTG 4 cut(s) 534, 1567, 1603, 1698
Cac8I GCNNGC 6 cut(s) 249, 711, 770, 1315, 1319, 1472
CfoI GCGC 2 cut(s) 770, 772
Cfr13I GGNCC 2 cut(s) 605, 1641
Csp6I GTAC 1 cut(s) 121
CviAII CATG 3 cut(s) 201, 787, 1318
CviQI GTAC 1 cut(s) 121
DpnI GATC 5 cut(s) 16, 150, 618, 1242, 1451
DpnII GATC 5 cut(s) 14, 148, 616, 1240, 1449
EciI GGCGGA 1 cut(s) 1379
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 1308
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 1331
Eco32I GATATC 1 cut(s) 1190
Eco47I GGWCC 2 cut(s) 605, 1641
Eco53kI GAGCTC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 1197
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 1641
EcoRII CCWGG 2 cut(s) 283, 1330
EcoRV GATATC 1 cut(s) 1190
EcoT14I CCWWGG 1 cut(s) 1308
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 1308
FaeI CATG 3 cut(s) 204, 790, 1321
FaqI GGGAC 2 cut(s) 452, 1654
FatI CATG 3 cut(s) 200, 786, 1317
FauI CCCGC 1 cut(s) 1551
FblI GTMKAC 1 cut(s) 1435
Fnu4HI GCNGC 5 cut(s) 349, 822, 1214, 1223, 1305
FokI GGATG 2 cut(s) 1029, 1347
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 5 cut(s) 349, 822, 1214, 1223, 1305
FspBI CTAG 2 cut(s) 1322, 1439
GlaI GCGC 2 cut(s) 769, 771
GluI GCNGC 5 cut(s) 349, 822, 1214, 1223, 1305
GsuI CTGGAG 1 cut(s) 1113
HaeIII GGCC 2 cut(s) 288, 305
HapII CCGG 1 cut(s) 1513
HhaI GCGC 2 cut(s) 770, 772
Hin1II CATG 3 cut(s) 204, 790, 1321
Hin6I GCGC 2 cut(s) 768, 770
HinP1I GCGC 2 cut(s) 768, 770
HincII GTYRAC 2 cut(s) 392, 417
HindII GTYRAC 2 cut(s) 392, 417
HindIII AAGCTT 5 cut(s) 494, 580, 1421, 1532, 1667
HinfI GANTC 4 cut(s) 317, 381, 742, 1110
HpaII CCGG 1 cut(s) 1513
HphI GGTGA 8 cut(s) 56, 251, 502, 749, 965, 1235, 1415, 1532
Hpy166II GTNNAC 8 cut(s) 193, 392, 417, 557, 661, 884, 1436, 1603
Hpy188I TCNGA 6 cut(s) 301, 477, 759, 891, 1210, 1624
Hpy188III TCNNGA 4 cut(s) 398, 434, 526, 984
Hpy8I GTNNAC 8 cut(s) 193, 392, 417, 557, 661, 884, 1436, 1603
HpyAV CCTTC 5 cut(s) 139, 316, 739, 972, 1400
HpyCH4III ACNGT 6 cut(s) 157, 538, 699, 1050, 1580, 1598
HpyCH4V TGCA 8 cut(s) 38, 185, 485, 824, 1059, 1225, 1286, 1474
Hsp92II CATG 3 cut(s) 204, 790, 1321
HspAI GCGC 2 cut(s) 768, 770
Kzo9I GATC 5 cut(s) 14, 148, 616, 1240, 1449
LmnI GCTCC 1 cut(s) 1210
Lsp1109I GCAGC 5 cut(s) 360, 808, 1209, 1225, 1316
LweI GCATC 4 cut(s) 240, 1051, 1263, 1325
MaeI CTAG 2 cut(s) 1322, 1439
MaeIII GTNAC 4 cut(s) 62, 325, 953, 1538
MalI GATC 5 cut(s) 16, 150, 618, 1242, 1451
MboI GATC 5 cut(s) 14, 148, 616, 1240, 1449
MboII GAAGA 4 cut(s) 69, 168, 1197, 1685
MfeI CAATTG 1 cut(s) 544
MflI RGATCY 1 cut(s) 1449
MhlI GDGCHC 1 cut(s) 228
MmeI TCCRAC 4 cut(s) 114, 1111, 1188, 1497
MroXI GAANNNNTTC 1 cut(s) 1345
MseI TTAA 5 cut(s) 875, 899, 912, 999, 1506
MslI CAYNNNNRTG 1 cut(s) 1271
MspI CCGG 1 cut(s) 1513
MspR9I CCNGG 2 cut(s) 285, 1332
MunI CAATTG 1 cut(s) 544
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 2 cut(s) 285, 1332
MvnI CGCG 1 cut(s) 770
NdeII GATC 5 cut(s) 14, 148, 616, 1240, 1449
NlaIII CATG 3 cut(s) 204, 790, 1321
NlaIV GGNNCC 3 cut(s) 1451, 1469, 1642
NmuCI GTSAC 3 cut(s) 62, 953, 1538
NspI RCATGY 3 cut(s) 204, 790, 1321
NspV TTCGAA 2 cut(s) 866, 1498
PaeI GCATGC 1 cut(s) 1321
PauI GCGCGC 1 cut(s) 768
PceI AGGCCT 1 cut(s) 305
PciI ACATGT 1 cut(s) 786
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 1345
PfeI GAWTC 4 cut(s) 317, 381, 742, 1110
PkrI GCNGC 5 cut(s) 350, 823, 1215, 1224, 1306
PpuMI RGGWCCY 1 cut(s) 1641
PscI ACATGT 1 cut(s) 786
PsiI TTATAA 1 cut(s) 1463
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 1641
Psp6I CCWGG 2 cut(s) 283, 1330
PspGI CCWGG 2 cut(s) 283, 1330
PspN4I GGNNCC 3 cut(s) 1451, 1469, 1642
PspPI GGNCC 2 cut(s) 605, 1641
PspPPI RGGWCCY 1 cut(s) 1641
PsuI RGATCY 1 cut(s) 1449
PteI GCGCGC 1 cut(s) 768
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 1271
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 5 cut(s) 875, 899, 912, 999, 1506
SatI GCNGC 5 cut(s) 349, 822, 1214, 1223, 1305
Sau3AI GATC 5 cut(s) 14, 148, 616, 1240, 1449
Sau96I GGNCC 2 cut(s) 605, 1641
ScrFI CCNGG 2 cut(s) 285, 1332
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 4 cut(s) 240, 1051, 1263, 1325
SfcI CTRYAG 1 cut(s) 98
SfuI TTCGAA 2 cut(s) 866, 1498
SinI GGWCC 2 cut(s) 605, 1641
SmiMI CAYNNNNRTG 1 cut(s) 1271
SphI GCATGC 1 cut(s) 1321
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 2 cut(s) 1364, 1544
SspMI CTAG 2 cut(s) 1322, 1439
SstI GAGCTC 1 cut(s) 228
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 283, 1330
StyI CCWWGG 1 cut(s) 1308
TaaI ACNGT 6 cut(s) 157, 538, 699, 1050, 1580, 1598
TaqI TCGA 3 cut(s) 866, 935, 1498
TfiI GAWTC 4 cut(s) 317, 381, 742, 1110
Tru1I TTAA 5 cut(s) 875, 899, 912, 999, 1506
Tru9I TTAA 5 cut(s) 875, 899, 912, 999, 1506
TscAI CASTG 4 cut(s) 541, 1574, 1603, 1705
TseFI GTSAC 3 cut(s) 62, 953, 1538
TseI GCWGC 5 cut(s) 348, 821, 1213, 1222, 1304
Tsp45I GTSAC 3 cut(s) 62, 953, 1538
TspDTI ATGAA 4 cut(s) 398, 1046, 1338, 1401
TspRI CASTG 4 cut(s) 541, 1574, 1603, 1705
VpaK11BI GGWCC 2 cut(s) 605, 1641
XapI RAATTY 6 cut(s) 138, 405, 856, 868, 1378, 1704
XceI RCATGY 3 cut(s) 204, 790, 1321
XmiI GTMKAC 1 cut(s) 1435
XmnI GAANNNNTTC 1 cut(s) 1345
XspI CTAG 2 cut(s) 1322, 1439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.