Rorug06G0505300
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005997
Physical Location & Seq
Reverse (-)
62071613 .. 62072094
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0505300.1

Sequence Viewer

Length: 441 bp
ATGGAGGAGTCTGCTGCCGGTGCCGATGAGGTGGAGATGGTGACGTGTCACTGCTGCGGGTTGGAGGAGGAGTGCACGCCGGGATATATAGCGCGGGAAAGGGAGAAGCACCATGGCCGTTGGATCTGCGGGCTTTGCTCGACGGCGATCGAGGACGACAGGATGAAGTTGCAGAGGAAGATCACCGCCGACGAGGCCATCAGGCGCCACGTCAAGTTTTACGAGAACTTTCGGTCGACGTCTCCGAGGAGGAGTGTGGATTCTTCCGCGGCGGAGGAGGAGGAGAAGGACTTGTTGATCTCGAAGGTGATGCAGCTCCTGCGGCGGACTTTGGACTCGCCGAGGAGGACCGGGACGGGTTCCGGTCGCGGGGCGTTTGATCACCGTCTTTTGAGGTCGAAGAGCTGCTTTGCGACTATAGGAGAGAAGGGTCTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.52

Weight (kDa)

6.53

Isoelectric Point (pI)

72.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 11 - 112 1e-26 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AccB1I GGYRCC 2 cut(s) 20, 204
AccI GTMKAC 1 cut(s) 236
AccII CGCG 3 cut(s) 94, 269, 369
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 115
AcyI GRCGYC 2 cut(s) 205, 239
AfiI CCNNNNNNNGG 1 cut(s) 369
AflIII ACRYGT 1 cut(s) 44
AjiI CACGTC 2 cut(s) 45, 211
AluBI AGCT 2 cut(s) 316, 405
AluI AGCT 2 cut(s) 316, 405
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 73
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 2 cut(s) 115, 195
ApaLI GTGCAC 1 cut(s) 73
ApeKI GCWGC 4 cut(s) 14, 54, 313, 405
AspLEI GCGC 2 cut(s) 94, 207
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 2 cut(s) 81, 352
AsuHPI GGTGA 4 cut(s) 52, 175, 319, 374
AvaII GGWCC 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 2 cut(s) 20, 204
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 3 cut(s) 41, 325, 392
BccI CCATC 2 cut(s) 31, 206
BceAI ACGGC 2 cut(s) 102, 159
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 2 cut(s) 81, 352
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 417
BfoI RGCGCY 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 6 cut(s) 15, 55, 270, 314, 323, 406
BlsI GCNGC 6 cut(s) 16, 56, 271, 315, 324, 407
Bme1390I CCNGG 2 cut(s) 81, 352
Bme18I GGWCC 1 cut(s) 348
BmgBI CACGTC 2 cut(s) 45, 211
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 3 cut(s) 22, 206, 361
BmrFI CCNGG 2 cut(s) 81, 352
BmsI GCATC 1 cut(s) 300
BpuMI CCSGG 2 cut(s) 81, 352
BsaHI GRCGYC 2 cut(s) 205, 239
BsaJI CCNNGG 4 cut(s) 112, 245, 267, 341
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse118I RCCGGY 1 cut(s) 17
BseDI CCNNGG 4 cut(s) 112, 245, 267, 341
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 369
BseRI GAGGAG 9 cut(s) 20, 80, 83, 262, 265, 290, 293, 296, 358
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 3 cut(s) 41, 325, 392
Bsh1236I CGCG 3 cut(s) 94, 269, 369
Bsh1285I CGRYCG 3 cut(s) 150, 236, 367
BshFI GGCC 2 cut(s) 117, 197
BshNI GGYRCC 2 cut(s) 20, 204
BsiEI CGRYCG 3 cut(s) 150, 236, 367
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 4 cut(s) 18, 80, 351, 363
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 246
BsmBI CGTCTC 1 cut(s) 246
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 2 cut(s) 117, 197
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 5 cut(s) 123, 147, 180, 297, 379
Bsp19I CCATGG 1 cut(s) 112
BspANI GGCC 2 cut(s) 117, 197
BspFNI CGCG 3 cut(s) 94, 269, 369
BspLI GGNNCC 3 cut(s) 22, 206, 361
BspPI GGATC 1 cut(s) 131
BspQI GCTCTTC 1 cut(s) 395
BspT107I GGYRCC 2 cut(s) 20, 204
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 4 cut(s) 112, 245, 267, 341
BssMI GATC 5 cut(s) 123, 147, 180, 297, 379
BssNI GRCGYC 2 cut(s) 205, 239
BssT1I CCWWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 395
BstACI GRCGYC 2 cut(s) 205, 239
BstAPI GCANNNNNTGC 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 77, 131
BstDSI CCRYGG 2 cut(s) 112, 267
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 3 cut(s) 94, 269, 369
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 2 cut(s) 94, 207
BstKTI GATC 5 cut(s) 126, 150, 183, 300, 382
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 5 cut(s) 123, 147, 180, 297, 379
BstMCI CGRYCG 3 cut(s) 150, 236, 367
BstMWI GCNNNNNNNGC 5 cut(s) 20, 135, 194, 319, 322
BstSCI CCNGG 2 cut(s) 79, 350
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 3 cut(s) 94, 269, 369
BstV1I GCAGC 3 cut(s) 41, 325, 392
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 2 cut(s) 117, 197
BtgI CCRYGG 2 cut(s) 112, 267
BtrI CACGTC 2 cut(s) 45, 211
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 77, 131
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 2 cut(s) 94, 207
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 348
Cfr42I CCGCGG 1 cut(s) 270
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 117, 133, 197, 316, 405
CviKI_1 RGCY 5 cut(s) 117, 133, 197, 316, 405
DinI GGCGCC 1 cut(s) 206
DpnI GATC 5 cut(s) 125, 149, 182, 299, 381
DpnII GATC 5 cut(s) 123, 147, 180, 297, 379
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
EciI GGCGGA 2 cut(s) 287, 340
Eco130I CCWWGG 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 206
EheI GGCGCC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 246
FaeI CATG 1 cut(s) 116
FaiI YATR 4 cut(s) 87, 89, 114, 419
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 1 cut(s) 367
FatI CATG 1 cut(s) 112
FauI CCCGC 4 cut(s) 50, 87, 122, 362
FbaI TGATCA 1 cut(s) 379
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 6 cut(s) 15, 55, 270, 314, 323, 406
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 6 cut(s) 15, 55, 270, 314, 323, 406
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 93, 206
GluI GCNGC 6 cut(s) 15, 55, 270, 314, 323, 406
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 2 cut(s) 117, 197
HapII CCGG 4 cut(s) 18, 80, 351, 363
HhaI GCGC 2 cut(s) 94, 207
Hin1I GRCGYC 2 cut(s) 205, 239
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 2 cut(s) 92, 205
HinP1I GCGC 2 cut(s) 92, 205
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 3 cut(s) 8, 260, 335
HpaII CCGG 4 cut(s) 18, 80, 351, 363
HphI GGTGA 4 cut(s) 52, 175, 319, 374
Hpy166II GTNNAC 2 cut(s) 75, 237
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 301, 434
Hpy8I GTNNAC 2 cut(s) 75, 237
Hpy99I CGWCG 3 cut(s) 145, 194, 241
HpyAV CCTTC 3 cut(s) 280, 298, 421
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 3 cut(s) 44, 210, 239
HpyCH4V TGCA 3 cut(s) 75, 172, 313
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 135, 194, 319, 322
HpySE526I ACGT 3 cut(s) 44, 210, 239
Hsp92I GRCGYC 2 cut(s) 205, 239
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 2 cut(s) 92, 205
KasI GGCGCC 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 379
KspI CCGCGG 1 cut(s) 270
Kzo9I GATC 5 cut(s) 123, 147, 180, 297, 379
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 7 cut(s) 31, 93, 145, 187, 332, 364, 376
Lsp1109I GCAGC 3 cut(s) 41, 325, 392
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 434
MaeII ACGT 3 cut(s) 44, 210, 239
MaeIII GTNAC 2 cut(s) 40, 47
MalI GATC 5 cut(s) 125, 149, 182, 299, 381
MboI GATC 5 cut(s) 123, 147, 180, 297, 379
MboII GAAGA 3 cut(s) 190, 255, 412
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 77
Mly113I GGCGCC 1 cut(s) 205
MlyI GAGTC 2 cut(s) 17, 329
MmeI TCCRAC 2 cut(s) 42, 101
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 4 cut(s) 18, 80, 351, 363
MspR9I CCNGG 2 cut(s) 81, 352
MvnI CGCG 3 cut(s) 94, 269, 369
MwoI GCNNNNNNNGC 5 cut(s) 20, 135, 194, 319, 322
NarI GGCGCC 1 cut(s) 205
NciI CCSGG 2 cut(s) 81, 352
NcoI CCATGG 1 cut(s) 112
NdeII GATC 5 cut(s) 123, 147, 180, 297, 379
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 3 cut(s) 22, 206, 361
NmeAIII GCCGAG 1 cut(s) 366
NmuCI GTSAC 2 cut(s) 40, 47
PciSI GCTCTTC 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 6 cut(s) 16, 56, 271, 315, 324, 407
Ple19I CGATCG 1 cut(s) 150
PleI GAGTC 2 cut(s) 16, 329
PluTI GGCGCC 1 cut(s) 208
PpsI GAGTC 2 cut(s) 16, 329
PspN4I GGNNCC 3 cut(s) 22, 206, 361
PspPI GGNCC 1 cut(s) 348
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 123
PvuI CGATCG 1 cut(s) 150
SacII CCGCGG 1 cut(s) 270
SalI GTCGAC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 395
SatI GCNGC 6 cut(s) 15, 55, 270, 314, 323, 406
Sau3AI GATC 5 cut(s) 123, 147, 180, 297, 379
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 2 cut(s) 17, 329
ScrFI CCNGG 2 cut(s) 81, 352
SduI GDGCHC 1 cut(s) 77
SetI ASST 8 cut(s) 33, 47, 213, 242, 309, 318, 398, 407
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 417
SfoI GGCGCC 1 cut(s) 206
Sfr303I CCGCGG 1 cut(s) 270
SgrBI CCGCGG 1 cut(s) 270
SinI GGWCC 1 cut(s) 348
SspDI GGCGCC 1 cut(s) 204
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 79, 350
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 3 cut(s) 47, 213, 242
TaqI TCGA 5 cut(s) 140, 150, 236, 302, 398
TaqII GACCGA 1 cut(s) 222
TauI GCSGC 2 cut(s) 272, 325
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 1 cut(s) 56
TseFI GTSAC 2 cut(s) 40, 47
TseI GCWGC 4 cut(s) 14, 54, 313, 405
Tsp45I GTSAC 2 cut(s) 40, 47
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 56
VneI GTGCAC 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 348
XbaI TCTAGA 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 236
XspI CTAG 1 cut(s) 434
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.