Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042207.1

Orthogroup ID

OG0006865

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1681

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042207.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1043 bp

atgggaggaggtcacagacggacttccgccgacgacgacgaccaggcggcgccgtcgtcttcttcaatctggtcgcatttctggtcctccgccaccagaaccaagcccttatccgactccggcatccgtaccagctccggcgatggcctcgtccgtaccctcggcatgtttgacctcatactcctcggcgtcggcgcctccatcggcgccgggatcttcgtcgtcactggcaccgtcgcccgcgacgccggtcccggagtcactgttagtttcattcttgccggagcgtcttgtgtgttaaatgcactctgttatgcggagctagcttctcgttttcctgccgttgttggtggagcgtacctctacacgtacacggcgttcaatgagctgactgctttccttgttttcggacaacttatgcttgattatcatatcggggctgctagcatagctcgaagcttagcgagctatgtagtgacaattctagaacttttccctatctttaaggaaaacataccggactggattggacatggtggccaacagtaccttgggggagctatatcgctcaatctcttagctccaattctccttgcacttctaactatagttctttgtcggggtgttggagaatcctctgctgtaaactcattcatgactgctacaaagataatcatcgttcttatcgtcatctttgctggtgcttttgaggttgatgtttcaaattggactccctttgccccaaatggttttaaaacagtgttgaccggagcaacagttgtattctttgcatatgttggatttgatgcagttgctaattcagctgaagaatcaaagagaccacagcgagacttgccaataggcatcataggcagccttctgatatgtgttatattgtatatcggtgtctgtttggtgatcactggaatggtaccatataaattccttggggaagatgctcctttggctgatgcttttacatccaaggggttgaaatttgttgccatcttaatcagtgttggcgctgttgctggacttacgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

348

Amino Acids

36.38

Weight (kDa)

5.34

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05940 AT1G05940 AT1G05940
fragaria_vesca	FvH4_7g09870 FvH4_7g09870 FvH4_7g09870 FvH4_7g09870 FvH4_7g09870
malus_domestica	MD07G1104100.v1.1
prunus_persica	Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1
pyrus_communis	pycom07g08920
rosa_chinensis	RchiOBHm_Chr1g0347411
rosa_laevigata	RLG00000028752
rosa_multiflora	Rmu_sc0009756.1_g000002 Rmu_sc0042207.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307840
rosa_rugosa	Rorug01G0186600 Rorug01G0186700
rosa_samantha	Rh1BG169900 Rh1CG189300 Rh1DG200300
rosa_wichuraiana	Rw1G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	931
AccB1I	GGYRCC	5 cut(s)	49, 194, 206, 230, 931
AccII	CGCG	1 cut(s)	243
AciI	CCGC	5 cut(s)	27, 47, 90, 241, 317
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	941, 995
AcuI	CTGAAG	1 cut(s)	846
AcyI	GRCGYC	5 cut(s)	50, 189, 195, 207, 246
AfaI	GTAC	6 cut(s)	130, 157, 359, 371, 548, 933
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	4 cut(s)	66, 382, 723, 994
AjnI	CCWGG	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	832, 843
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	2 cut(s)	145, 538
ApeKI	GCWGC	2 cut(s)	440, 873
ApoI	RAATTY	2 cut(s)	941, 995
Asp718I	GGTACC	1 cut(s)	931
AspLEI	GCGC	4 cut(s)	52, 197, 209, 1025
AspS9I	GGNCC	2 cut(s)	84, 251
AsuC2I	CCSGG	2 cut(s)	211, 255
AsuHPI	GGTGA	1 cut(s)	928
AsuNHI	GCTAGC	2 cut(s)	322, 443
AvaII	GGWCC	2 cut(s)	84, 251
BalI	TGGCCA	1 cut(s)	540
BanI	GGYRCC	5 cut(s)	49, 194, 206, 230, 931
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	427, 885
BccI	CCATC	3 cut(s)	137, 209, 1013
BceAI	ACGGC	3 cut(s)	37, 326, 390
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	1 cut(s)	918
BcnI	CCSGG	2 cut(s)	211, 255
BcoDI	GTCTC	2 cut(s)	832, 843
BfaI	CTAG	3 cut(s)	323, 444, 485
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	4 cut(s)	53, 198, 210, 1026
BisI	GCNGC	3 cut(s)	48, 441, 874
BlpI	GCTNAGC	1 cut(s)	460
BlsI	GCNGC	3 cut(s)	49, 442, 875
Bme1390I	CCNGG	3 cut(s)	44, 211, 255
Bme18I	GGWCC	2 cut(s)	84, 251
BmgT120I	GGNCC	2 cut(s)	84, 251
BmiI	GGNNCC	6 cut(s)	51, 196, 208, 232, 253, 933
BmrFI	CCNGG	3 cut(s)	44, 211, 255
BmsI	GCATC	5 cut(s)	132, 796, 873, 946, 961
BmtI	GCTAGC	2 cut(s)	326, 447
BoxI	GACNNNNGTC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
Bpu1102I	GCTNAGC	1 cut(s)	460
BpuMI	CCSGG	2 cut(s)	211, 255
BsaAI	YACGTR	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	5 cut(s)	50, 189, 195, 207, 246
BsaI	GGTCTC	1 cut(s)	832
BsaJI	CCNNGG	5 cut(s)	160, 184, 550, 946, 984
BsaWI	WCCGGW	2 cut(s)	517, 767
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 762, 792
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	232, 527, 928
Bse8I	GATNNNNATC	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	5 cut(s)	160, 184, 550, 946, 984
BseGI	GGATG	2 cut(s)	123, 980
BseJI	GATNNNNATC	1 cut(s)	674
BseNI	ACTGG	3 cut(s)	232, 527, 928
BseRI	GAGGAG	2 cut(s)	21, 173
BseXI	GCAGC	2 cut(s)	427, 885
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	147, 540
BshNI	GGYRCC	5 cut(s)	49, 194, 206, 230, 931
BsiSI	CCGG	8 cut(s)	120, 138, 210, 249, 255, 282, 518, 768
BslFI	GGGAC	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	832, 843
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	147, 540
Bso31I	GGTCTC	1 cut(s)	832
Bsp143I	GATC	2 cut(s)	213, 918
Bsp1720I	GCTNAGC	1 cut(s)	460
BspACI	CCGC	5 cut(s)	27, 47, 90, 241, 317
BspANI	GGCC	2 cut(s)	147, 540
BspFNI	CGCG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	6 cut(s)	51, 196, 208, 232, 253, 933
BspOI	GCTAGC	2 cut(s)	326, 447
BspPI	GGATC	1 cut(s)	221
BspT107I	GGYRCC	5 cut(s)	49, 194, 206, 230, 931
BspTNI	GGTCTC	1 cut(s)	832
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	232, 527, 928
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	5 cut(s)	160, 184, 550, 946, 984
BssMI	GATC	2 cut(s)	213, 918
BssNI	GRCGYC	5 cut(s)	50, 189, 195, 207, 246
BssT1I	CCWWGG	3 cut(s)	550, 946, 984
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	5 cut(s)	235, 265, 546, 760, 778
BstACI	GRCGYC	5 cut(s)	50, 189, 195, 207, 246
BstBAI	YACGTR	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	241, 324, 445, 466
BstDEI	CTNAG	2 cut(s)	460, 577
BstF5I	GGATG	2 cut(s)	123, 980
BstFNI	CGCG	1 cut(s)	243
BstH2I	RGCGCY	4 cut(s)	53, 198, 210, 1026
BstHHI	GCGC	4 cut(s)	52, 197, 209, 1025
BstKTI	GATC	2 cut(s)	216, 921
BstMAI	GTCTC	2 cut(s)	832, 843
BstMBI	GATC	2 cut(s)	213, 918
BstMWI	GCNNNNNNNGC	8 cut(s)	245, 323, 449, 465, 821, 853, 870, 965
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	169
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	3 cut(s)	42, 209, 253
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	427, 885
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	147, 540
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	123, 980
BtsIMutI	CAGTG	5 cut(s)	225, 261, 765, 921, 1021
Cac8I	GCNNGC	4 cut(s)	241, 324, 445, 466
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	4 cut(s)	52, 197, 209, 1025
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	84, 251
CseI	GACGC	3 cut(s)	178, 254, 276
Csp6I	GTAC	6 cut(s)	129, 156, 358, 370, 547, 932
CviAII	CATG	3 cut(s)	166, 533, 655
CviQI	GTAC	6 cut(s)	129, 156, 358, 370, 547, 932
DdeI	CTNAG	2 cut(s)	460, 577
DinI	GGCGCC	3 cut(s)	51, 196, 208
DpnI	GATC	2 cut(s)	215, 920
DpnII	GATC	2 cut(s)	213, 918
DraI	TTTAAA	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	538
EciI	GGCGGA	2 cut(s)	16, 79
Eco130I	CCWWGG	3 cut(s)	550, 946, 984
Eco31I	GGTCTC	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	84, 251
Eco57I	CTGAAG	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	3 cut(s)	550, 946, 984
EgeI	GGCGCC	3 cut(s)	51, 196, 208
EheI	GGCGCC	3 cut(s)	51, 196, 208
ErhI	CCWWGG	3 cut(s)	550, 946, 984
FaeI	CATG	3 cut(s)	169, 536, 658
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	3 cut(s)	165, 532, 654
FauI	CCCGC	1 cut(s)	248
FauNDI	CATATG	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	918
Fnu4HI	GCNGC	3 cut(s)	48, 441, 874
FokI	GGATG	2 cut(s)	110, 967
Fsp4HI	GCNGC	3 cut(s)	48, 441, 874
FspBI	CTAG	3 cut(s)	323, 444, 485
GlaI	GCGC	4 cut(s)	51, 196, 208, 1024
GluI	GCNGC	3 cut(s)	48, 441, 874
HaeII	RGCGCY	4 cut(s)	53, 198, 210, 1026
HaeIII	GGCC	2 cut(s)	147, 540
HapII	CCGG	8 cut(s)	120, 138, 210, 249, 255, 282, 518, 768
HgaI	GACGC	3 cut(s)	178, 254, 276
HhaI	GCGC	4 cut(s)	52, 197, 209, 1025
Hin1I	GRCGYC	5 cut(s)	50, 189, 195, 207, 246
Hin1II	CATG	3 cut(s)	169, 536, 658
Hin6I	GCGC	4 cut(s)	50, 195, 207, 1023
HinP1I	GCGC	4 cut(s)	50, 195, 207, 1023
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	5 cut(s)	116, 258, 632, 730, 830
HpaII	CCGG	8 cut(s)	120, 138, 210, 249, 255, 282, 518, 768
HphI	GGTGA	1 cut(s)	928
Hpy166II	GTNNAC	3 cut(s)	372, 646, 765
Hpy188I	TCNGA	3 cut(s)	115, 410, 882
Hpy188III	TCNNGA	2 cut(s)	485, 655
Hpy8I	GTNNAC	3 cut(s)	372, 646, 765
Hpy99I	CGWCG	8 cut(s)	35, 38, 41, 58, 194, 224, 239, 248
HpyAV	CCTTC	1 cut(s)	887
HpyCH4III	ACNGT	5 cut(s)	235, 265, 546, 760, 778
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	4 cut(s)	305, 596, 791, 809
HpyF10VI	GCNNNNNNNGC	8 cut(s)	245, 323, 449, 465, 821, 853, 870, 965
HpyF3I	CTNAG	2 cut(s)	460, 577
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	5 cut(s)	50, 189, 195, 207, 246
Hsp92II	CATG	3 cut(s)	169, 536, 658
HspAI	GCGC	4 cut(s)	50, 195, 207, 1023
KasI	GGCGCC	3 cut(s)	49, 194, 206
KpnI	GGTACC	1 cut(s)	935
Ksp22I	TGATCA	1 cut(s)	918
Kzo9I	GATC	2 cut(s)	213, 918
LmnI	GCTCC	8 cut(s)	140, 284, 319, 353, 557, 586, 770, 964
Lsp1109I	GCAGC	2 cut(s)	427, 885
LweI	GCATC	5 cut(s)	132, 796, 873, 946, 961
MaeI	CTAG	3 cut(s)	323, 444, 485
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	4 cut(s)	11, 223, 259, 475
MalI	GATC	2 cut(s)	215, 920
MboI	GATC	2 cut(s)	213, 918
MboII	GAAGA	5 cut(s)	51, 54, 208, 839, 965
MflI	RGATCY	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	6 cut(s)	480, 585, 724, 817, 941, 995
MluNI	TGGCCA	1 cut(s)	540
Mly113I	GGCGCC	3 cut(s)	50, 195, 207
MlyI	GAGTC	3 cut(s)	110, 267, 724
MmeI	TCCRAC	3 cut(s)	138, 607, 778
MnlI	CCTC	9 cut(s)	97, 158, 170, 185, 194, 208, 371, 646, 703
Mox20I	TGGCCA	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	4 cut(s)	299, 504, 753, 1010
MslI	CAYNNNNRTG	1 cut(s)	926
Msp20I	TGGCCA	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	8 cut(s)	120, 138, 210, 249, 255, 282, 518, 768
MspR9I	CCNGG	3 cut(s)	44, 211, 255
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	8 cut(s)	245, 323, 449, 465, 821, 853, 870, 965
NarI	GGCGCC	3 cut(s)	50, 195, 207
NciI	CCSGG	2 cut(s)	211, 255
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	2 cut(s)	213, 918
NheI	GCTAGC	2 cut(s)	322, 443
NlaIII	CATG	3 cut(s)	169, 536, 658
NlaIV	GGNNCC	6 cut(s)	51, 196, 208, 232, 253, 933
NmeAIII	GCCGAG	2 cut(s)	141, 165
NmuCI	GTSAC	4 cut(s)	11, 223, 259, 475
NspI	RCATGY	1 cut(s)	169
PagI	TCATGA	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	2 cut(s)	374, 684
PfeI	GAWTC	2 cut(s)	632, 830
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	49, 442, 875
PleI	GAGTC	3 cut(s)	110, 266, 724
PluTI	GGCGCC	3 cut(s)	53, 198, 210
PpsI	GAGTC	3 cut(s)	110, 266, 724
Ppu21I	YACGTR	1 cut(s)	369
PshAI	GACNNNNGTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	6 cut(s)	51, 196, 208, 232, 253, 933
PspPI	GGNCC	2 cut(s)	84, 251
PsrI	GAACNNNNNNTAC	2 cut(s)	362, 394
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	6 cut(s)	130, 157, 359, 371, 548, 933
RsaNI	GTAC	6 cut(s)	129, 156, 358, 370, 547, 932
RseI	CAYNNNNRTG	1 cut(s)	926
SaqAI	TTAA	4 cut(s)	299, 504, 753, 1010
SatI	GCNGC	3 cut(s)	48, 441, 874
Sau3AI	GATC	2 cut(s)	213, 918
Sau96I	GGNCC	2 cut(s)	84, 251
SchI	GAGTC	3 cut(s)	110, 267, 724
ScrFI	CCNGG	3 cut(s)	44, 211, 255
SfaNI	GCATC	5 cut(s)	132, 796, 873, 946, 961
SfcI	CTRYAG	1 cut(s)	606
SfoI	GGCGCC	3 cut(s)	51, 196, 208
SinI	GGWCC	2 cut(s)	84, 251
SmiMI	CAYNNNNRTG	1 cut(s)	926
Sse9I	AATT	6 cut(s)	480, 585, 724, 817, 941, 995
SsiI	CCGC	5 cut(s)	27, 47, 90, 241, 317
SspDI	GGCGCC	3 cut(s)	49, 194, 206
SspMI	CTAG	3 cut(s)	323, 444, 485
StyD4I	CCNGG	3 cut(s)	42, 209, 253
StyI	CCWWGG	3 cut(s)	550, 946, 984
TaaI	ACNGT	5 cut(s)	235, 265, 546, 760, 778
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	454
TasI	AATT	6 cut(s)	480, 585, 724, 817, 941, 995
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	632, 830
Tru1I	TTAA	4 cut(s)	299, 504, 753, 1010
Tru9I	TTAA	4 cut(s)	299, 504, 753, 1010
TscAI	CASTG	5 cut(s)	232, 268, 765, 928, 1021
TseFI	GTSAC	4 cut(s)	11, 223, 259, 475
TseI	GCWGC	2 cut(s)	440, 873
Tsp45I	GTSAC	4 cut(s)	11, 223, 259, 475
TspDTI	ATGAA	2 cut(s)	262, 643
TspGWI	ACGGA	3 cut(s)	34, 116, 143
TspRI	CASTG	5 cut(s)	232, 268, 765, 928, 1021
VpaK11BI	GGWCC	2 cut(s)	84, 251
XapI	RAATTY	2 cut(s)	941, 995
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XspI	CTAG	3 cut(s)	323, 444, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.