Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006865

Physical Location & Seq

Genomic Coordinates Reverse (-)

37932065 .. 37935913

Gene Structure 3849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGGAGGAGGTCACAGACGGACTTCCGCCGACGACGACGACCAGGCGGCGCCGTCGTCTTCTTCAATCTGGTCGCATTTCTGGTCCTCCGCCACCAGAACCAAGCCCTTATCCGACTCCGGCACCCGTACCAGCTCCGGCGATGGACTCGTCCGTACCCTCGGCATGTTTGACCTCATACTCCTCGGCGTCGGCGCCTCCATCGGCGCCGGGATCTTCGTCGTCACTGGCACCGTCGCCCGCGACGCCGGTCCCGGAGTGACTGTTAGTTTCATTCTTGCCGGAGCGTCTTGTGTGTTAAATGCACTCTGTTATGCGGAGCTAGCTTCTCGTTTTCCTGCCGTTGTTGGTGGAGCGTACCTCTACACGTACACGGCGTTCAATGAGCTGACTGCTTTCCTTGTTTTCGGACAACTTATGCTTGACTATCATATTGGGGCTGCCAGCATAGCTCGAAGCTTAGCGAGCTATGTAGTGACAATTCTAGAACTTTTCCCTATCTTTAAGGAAAACATACCGGACTGGATTGGACATGGTGGCCAACAGTACCTTGGGGGAGCTATATCGCTCAATCTCTTAGCTCCAATTCTCCTTGCACTTCTAACTATAGTTCTTTGTCGGGGTGTTGGAGAATCCTCTGCTGTAAACTCATTCATGACTGCTACAAAGATAATCATCGTTCTTATCGTCATCTTCGCTGGTGCTTTTGAGGTTGATGTTTCAAATTGGACTCCCTTTGCCCCAAATGGTTTTAAAACAGTATTGACTGGAGCAACAGTTGTATTCTTTGCATATGTTGGATTTGATGCAGTTGCTAATTCAGCTGAAGAATCAAAGAGACCACAGCGGGACTTGCCAATAGGCATCATAGGCAGCCTTCTGATATGTGTTATATTGTATATCGGTGTCTGTTTGGTGATCACTGGAATGGTACCATATAAATTCCTTGGGGAAGATGCTCCTTTGGCTGATGCTTTTACATCCAAGGGGTTGAAATTTGTTGCCATCTTAATCAGTGTTGGCGCTGTTGCTGGACTTACGACTACCCTTCTAGTTGGTCTCTATGTTCAGTCTCGATTATATCTTGGGCTTGGAAGAGATGGTTTACTACCTTCACTGTTTGCTAGAGTACACGCAAGACGCCGAACTCCCATTCATTCTCAGGTGTGGGTTGGTATTGTTGCTGGCATTCTGGCAGGGTTGTTTAATGTGCATATTCTCTCGCATATCCTTTCAGTTGGCGCATTGACAGGCTACTCTGTTGTTGCTGCATCTGTGGTTGCTCTTCGTTTGAAGGATAAGGCATCAAGTCAGGTGTCATCTACGTCCTGGCGGGAAGGTGTCATCTGCTTATTCATAGTTGCATGCAGTGGTTTTGGTGCTGGAGTCTTCTACAGATTCAACACTTCATTTATTTTTATGGTCATAGCTGTGATTGTGGCAATACTTGCTTCGTGTGCTCTTTGTTTCCGCCAAACTTATGCAGATATGCCAGGGTTTTCGTGTCCTGGGGTTCCAATTGTACCAACTGTATGCATCTTCTTCAACATGTTTCTATTTGCTCAGTTACACCATGAAGCATGGGTGAGATTTGTCATCCTCAGCATCATTACAGTTGGTATTTATGCATTTTATGGACAATACCATGCTGATCCAACTGCAGAGGAGACTATCATTTATCATAGGGCACCAGAAGACTTGCGGTCGGACGCTGCAGCAGCAACAGTGGAACTGCTCTCAACAACTGAAATTTCCTTGACTGAAAATCCCAAATCTACTTCTGCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

596

Amino Acids

63.3

Weight (kDa)

6.45

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	54 - 496	1.4e-45	Amino acid permease
AA_permease	PF00324	59 - 459	7.5e-31	Amino acid permease
AA_permease_C	PF13906	500 - 549	7e-17	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05940 AT1G05940 AT1G05940
fragaria_vesca	FvH4_7g09870 FvH4_7g09870 FvH4_7g09870 FvH4_7g09870 FvH4_7g09870
malus_domestica	MD07G1104100.v1.1
prunus_persica	Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1
pyrus_communis	pycom07g08920
rosa_chinensis	RchiOBHm_Chr1g0347411
rosa_laevigata	RLG00000028752
rosa_multiflora	Rmu_sc0009756.1_g000002 Rmu_sc0042207.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307840
rosa_rugosa	Rorug01G0186600 Rorug01G0186700
rosa_samantha	Rh1BG169900 Rh1CG189300 Rh1DG200300
rosa_wichuraiana	Rw1G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	931
AccB1I	GGYRCC	7 cut(s)	49, 122, 194, 206, 230, 931, 1687
AccII	CGCG	1 cut(s)	243
AciI	CCGC	9 cut(s)	27, 47, 90, 241, 317, 847, 1333, 1471, 1702
AclWI	GGATC	2 cut(s)	221, 1646
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	3 cut(s)	941, 995, 1749
AcuI	CTGAAG	1 cut(s)	846
AcyI	GRCGYC	6 cut(s)	50, 189, 195, 207, 246, 1141
AfaI	GTAC	8 cut(s)	130, 157, 359, 371, 548, 933, 1131, 1524
AflIII	ACRYGT	2 cut(s)	366, 1548
AgsI	TTSAA	7 cut(s)	66, 382, 723, 994, 1294, 1402, 1546
AhdI	GACNNNNNGTC	1 cut(s)	1702
AjnI	CCWGG	4 cut(s)	42, 1328, 1492, 1507
Alw21I	GWGCWC	1 cut(s)	1462
Alw26I	GTCTC	4 cut(s)	832, 1064, 1077, 1661
AlwI	GGATC	2 cut(s)	221, 1646
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	6 cut(s)	440, 873, 1268, 1712, 1715, 1718
ApoI	RAATTY	3 cut(s)	941, 995, 1749
Asp718I	GGTACC	1 cut(s)	931
AspLEI	GCGC	5 cut(s)	52, 197, 209, 1025, 1244
AspS9I	GGNCC	2 cut(s)	84, 251
AsuC2I	CCSGG	2 cut(s)	211, 255
AsuHPI	GGTGA	2 cut(s)	928, 1597
AsuNHI	GCTAGC	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	84, 251
BaeGI	GKGCMC	1 cut(s)	1690
BalI	TGGCCA	1 cut(s)	540
BanI	GGYRCC	7 cut(s)	49, 122, 194, 206, 230, 931, 1687
BbsI	GAAGAC	3 cut(s)	51, 1381, 1701
Bbv12I	GWGCWC	1 cut(s)	1462
BbvCI	CCTCAGC	1 cut(s)	1601
BbvI	GCAGC	6 cut(s)	427, 885, 1255, 1699, 1727, 1730
BccI	CCATC	4 cut(s)	137, 209, 1013, 1094
BceAI	ACGGC	3 cut(s)	37, 326, 390
BciT130I	CCWGG	4 cut(s)	44, 1330, 1494, 1509
BclI	TGATCA	1 cut(s)	918
BcnI	CCSGG	2 cut(s)	211, 255
BcoDI	GTCTC	4 cut(s)	832, 1064, 1077, 1661
BfaI	CTAG	4 cut(s)	323, 485, 1052, 1125
BfmI	CTRYAG	4 cut(s)	606, 1393, 1659, 1713
BfoI	RGCGCY	4 cut(s)	53, 198, 210, 1026
BisI	GCNGC	7 cut(s)	48, 441, 874, 1269, 1713, 1716, 1719
BlpI	GCTNAGC	1 cut(s)	460
BlsI	GCNGC	7 cut(s)	49, 442, 875, 1270, 1714, 1717, 1720
Bme1390I	CCNGG	6 cut(s)	44, 211, 255, 1330, 1494, 1509
Bme18I	GGWCC	2 cut(s)	84, 251
BmeRI	GACNNNNNGTC	1 cut(s)	1702
BmgT120I	GGNCC	2 cut(s)	84, 251
BmiI	GGNNCC	9 cut(s)	51, 124, 196, 208, 232, 253, 933, 1515, 1689
BmrFI	CCNGG	6 cut(s)	44, 211, 255, 1330, 1494, 1509
BmsI	GCATC	8 cut(s)	796, 873, 946, 961, 1280, 1313, 1545, 1614
BmtI	GCTAGC	1 cut(s)	326
BoxI	GACNNNNGTC	1 cut(s)	249
BpiI	GAAGAC	3 cut(s)	51, 1381, 1701
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpmI	CTGGAG	2 cut(s)	789, 1404
Bpu10I	CCTNAGC	1 cut(s)	1601
Bpu1102I	GCTNAGC	1 cut(s)	460
BpuMI	CCSGG	2 cut(s)	211, 255
BsaAI	YACGTR	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	674
BsaHI	GRCGYC	6 cut(s)	50, 189, 195, 207, 246, 1141
BsaI	GGTCTC	2 cut(s)	832, 1064
BsaJI	CCNNGG	7 cut(s)	160, 184, 550, 946, 984, 1493, 1508
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 762, 792
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	4 cut(s)	232, 527, 772, 928
Bse8I	GATNNNNATC	1 cut(s)	674
BseBI	CCWGG	4 cut(s)	44, 1330, 1494, 1509
BseDI	CCNNGG	7 cut(s)	160, 184, 550, 946, 984, 1493, 1508
BseGI	GGATG	2 cut(s)	980, 1596
BseJI	GATNNNNATC	1 cut(s)	674
BseMII	CTCAG	3 cut(s)	1175, 1577, 1615
BseNI	ACTGG	4 cut(s)	232, 527, 772, 928
BseRI	GAGGAG	3 cut(s)	21, 173, 1679
BseSI	GKGCMC	1 cut(s)	1690
BseXI	GCAGC	6 cut(s)	427, 885, 1255, 1699, 1727, 1730
Bsh1236I	CGCG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	1706
BshFI	GGCC	1 cut(s)	540
BshNI	GGYRCC	7 cut(s)	49, 122, 194, 206, 230, 931, 1687
BsiEI	CGRYCG	1 cut(s)	1706
BsiHKAI	GWGCWC	1 cut(s)	1462
BsiSI	CCGG	7 cut(s)	120, 138, 210, 249, 255, 282, 518
BslFI	GGGAC	2 cut(s)	237, 863
BsmAI	GTCTC	4 cut(s)	832, 1064, 1077, 1661
BsmFI	GGGAC	2 cut(s)	237, 863
BsmI	GAATGC	1 cut(s)	1188
BsnI	GGCC	1 cut(s)	540
Bso31I	GGTCTC	2 cut(s)	832, 1064
Bsp1286I	GDGCHC	2 cut(s)	1462, 1690
Bsp143I	GATC	3 cut(s)	213, 918, 1651
Bsp1720I	GCTNAGC	1 cut(s)	460
BspACI	CCGC	9 cut(s)	27, 47, 90, 241, 317, 847, 1333, 1471, 1702
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	3 cut(s)	1174, 1576, 1614
BspFNI	CGCG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	9 cut(s)	51, 124, 196, 208, 232, 253, 933, 1515, 1689
BspMAI	CTGCAG	2 cut(s)	1663, 1717
BspOI	GCTAGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	221, 1646
BspQI	GCTCTTC	1 cut(s)	1290
BspT107I	GGYRCC	7 cut(s)	49, 122, 194, 206, 230, 931, 1687
BspTNI	GGTCTC	2 cut(s)	832, 1064
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	4 cut(s)	232, 527, 772, 928
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	7 cut(s)	160, 184, 550, 946, 984, 1493, 1508
BssMI	GATC	3 cut(s)	213, 918, 1651
BssNI	GRCGYC	6 cut(s)	50, 189, 195, 207, 246, 1141
BssT1I	CCWWGG	3 cut(s)	550, 946, 984
Bst2UI	CCWGG	4 cut(s)	44, 1330, 1494, 1509
Bst4CI	ACNGT	9 cut(s)	235, 265, 546, 760, 778, 1119, 1531, 1615, 1726
Bst6I	CTCTTC	2 cut(s)	1090, 1290
BstACI	GRCGYC	6 cut(s)	50, 189, 195, 207, 246, 1141
BstAPI	GCANNNNNTGC	1 cut(s)	1448
BstBAI	YACGTR	1 cut(s)	369
BstC8I	GCNNGC	6 cut(s)	241, 324, 445, 466, 1186, 1366
BstDEI	CTNAG	5 cut(s)	460, 577, 1161, 1563, 1601
BstF5I	GGATG	2 cut(s)	980, 1596
BstFNI	CGCG	1 cut(s)	243
BstH2I	RGCGCY	4 cut(s)	53, 198, 210, 1026
BstHHI	GCGC	5 cut(s)	52, 197, 209, 1025, 1244
BstKTI	GATC	3 cut(s)	216, 921, 1654
BstMAI	GTCTC	4 cut(s)	832, 1064, 1077, 1661
BstMBI	GATC	3 cut(s)	213, 918, 1651
BstMCI	CGRYCG	1 cut(s)	1706
BstNI	CCWGG	4 cut(s)	44, 1330, 1494, 1509
BstNSI	RCATGY	3 cut(s)	169, 1368, 1552
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	6 cut(s)	42, 209, 253, 1328, 1492, 1507
BstSFI	CTRYAG	4 cut(s)	606, 1393, 1659, 1713
BstSLI	GKGCMC	1 cut(s)	1690
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	6 cut(s)	427, 885, 1255, 1699, 1727, 1730
BstV2I	GAAGAC	3 cut(s)	51, 1381, 1701
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	980, 1596
BtsI	GCAGTG	1 cut(s)	1375
BtsIMutI	CAGTG	6 cut(s)	225, 921, 1021, 1115, 1375, 1731
Cac8I	GCNNGC	6 cut(s)	241, 324, 445, 466, 1186, 1366
CciI	TCATGA	1 cut(s)	654
CfoI	GCGC	5 cut(s)	52, 197, 209, 1025, 1244
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	84, 251
CseI	GACGC	5 cut(s)	178, 254, 276, 1149, 1718
Csp6I	GTAC	8 cut(s)	129, 156, 358, 370, 547, 932, 1130, 1523
CviAII	CATG	8 cut(s)	166, 533, 655, 1365, 1549, 1574, 1581, 1646
CviQI	GTAC	8 cut(s)	129, 156, 358, 370, 547, 932, 1130, 1523
DdeI	CTNAG	5 cut(s)	460, 577, 1161, 1563, 1601
DinI	GGCGCC	3 cut(s)	51, 196, 208
DpnI	GATC	3 cut(s)	215, 920, 1653
DpnII	GATC	3 cut(s)	213, 918, 1651
DraI	TTTAAA	1 cut(s)	754
DriI	GACNNNNNGTC	1 cut(s)	1702
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	1090, 1290
Eam1105I	GACNNNNNGTC	1 cut(s)	1702
EarI	CTCTTC	2 cut(s)	1090, 1290
EciI	GGCGGA	3 cut(s)	16, 79, 1460
Eco130I	CCWWGG	3 cut(s)	550, 946, 984
Eco31I	GGTCTC	2 cut(s)	832, 1064
Eco47I	GGWCC	2 cut(s)	84, 251
Eco57I	CTGAAG	1 cut(s)	846
EcoRII	CCWGG	4 cut(s)	42, 1328, 1492, 1507
EcoT14I	CCWWGG	3 cut(s)	550, 946, 984
EcoT22I	ATGCAT	2 cut(s)	1538, 1630
EgeI	GGCGCC	3 cut(s)	51, 196, 208
EheI	GGCGCC	3 cut(s)	51, 196, 208
ErhI	CCWWGG	3 cut(s)	550, 946, 984
FaeI	CATG	8 cut(s)	169, 536, 658, 1368, 1552, 1577, 1584, 1649
FaqI	GGGAC	2 cut(s)	237, 863
FatI	CATG	8 cut(s)	165, 532, 654, 1364, 1548, 1573, 1580, 1645
FauI	CCCGC	3 cut(s)	248, 840, 1326
FauNDI	CATATG	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	918
Fnu4HI	GCNGC	7 cut(s)	48, 441, 874, 1269, 1713, 1716, 1719
FokI	GGATG	2 cut(s)	967, 1583
Fsp4HI	GCNGC	7 cut(s)	48, 441, 874, 1269, 1713, 1716, 1719
FspBI	CTAG	4 cut(s)	323, 485, 1052, 1125
GlaI	GCGC	5 cut(s)	51, 196, 208, 1024, 1243
GluI	GCNGC	7 cut(s)	48, 441, 874, 1269, 1713, 1716, 1719
GsuI	CTGGAG	2 cut(s)	789, 1404
HaeII	RGCGCY	4 cut(s)	53, 198, 210, 1026
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	7 cut(s)	120, 138, 210, 249, 255, 282, 518
HgaI	GACGC	5 cut(s)	178, 254, 276, 1149, 1718
HhaI	GCGC	5 cut(s)	52, 197, 209, 1025, 1244
Hin1I	GRCGYC	6 cut(s)	50, 189, 195, 207, 246, 1141
Hin1II	CATG	8 cut(s)	169, 536, 658, 1368, 1552, 1577, 1584, 1649
Hin6I	GCGC	5 cut(s)	50, 195, 207, 1023, 1242
HinP1I	GCGC	5 cut(s)	50, 195, 207, 1023, 1242
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	7 cut(s)	116, 147, 632, 730, 830, 1386, 1398
HpaII	CCGG	7 cut(s)	120, 138, 210, 249, 255, 282, 518
HphI	GGTGA	2 cut(s)	928, 1597
Hpy166II	GTNNAC	4 cut(s)	372, 646, 1106, 1132
Hpy188I	TCNGA	4 cut(s)	115, 410, 882, 1708
Hpy188III	TCNNGA	3 cut(s)	485, 655, 1074
Hpy8I	GTNNAC	4 cut(s)	372, 646, 1106, 1132
Hpy99I	CGWCG	8 cut(s)	35, 38, 41, 58, 194, 224, 239, 248
HpyAV	CCTTC	5 cut(s)	887, 1058, 1122, 1288, 1331
HpyCH4III	ACNGT	9 cut(s)	235, 265, 546, 760, 778, 1119, 1531, 1615, 1726
HpyCH4IV	ACGT	2 cut(s)	368, 1325
HpyF3I	CTNAG	5 cut(s)	460, 577, 1161, 1563, 1601
HpySE526I	ACGT	2 cut(s)	368, 1325
Hsp92I	GRCGYC	6 cut(s)	50, 189, 195, 207, 246, 1141
Hsp92II	CATG	8 cut(s)	169, 536, 658, 1368, 1552, 1577, 1584, 1649
HspAI	GCGC	5 cut(s)	50, 195, 207, 1023, 1242
KasI	GGCGCC	3 cut(s)	49, 194, 206
KpnI	GGTACC	1 cut(s)	935
Ksp22I	TGATCA	1 cut(s)	918
Kzo9I	GATC	3 cut(s)	213, 918, 1651
LguI	GCTCTTC	1 cut(s)	1290
LmnI	GCTCC	8 cut(s)	140, 284, 319, 353, 557, 586, 770, 964
Lsp1109I	GCAGC	6 cut(s)	427, 885, 1255, 1699, 1727, 1730
LweI	GCATC	8 cut(s)	796, 873, 946, 961, 1280, 1313, 1545, 1614
MaeI	CTAG	4 cut(s)	323, 485, 1052, 1125
MaeII	ACGT	2 cut(s)	368, 1325
MaeIII	GTNAC	5 cut(s)	11, 223, 259, 475, 1566
MalI	GATC	3 cut(s)	215, 920, 1653
MboI	GATC	3 cut(s)	213, 918, 1651
MfeI	CAATTG	1 cut(s)	1518
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	1462, 1690
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	8 cut(s)	480, 585, 724, 817, 941, 995, 1518, 1749
MluNI	TGGCCA	1 cut(s)	540
Mly113I	GGCGCC	3 cut(s)	50, 195, 207
MlyI	GAGTC	4 cut(s)	110, 141, 724, 1395
MmeI	TCCRAC	5 cut(s)	138, 607, 778, 1679, 1686
Mox20I	TGGCCA	1 cut(s)	540
Mph1103I	ATGCAT	2 cut(s)	1538, 1630
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	5 cut(s)	299, 504, 753, 1010, 1206
MslI	CAYNNNNRTG	2 cut(s)	926, 1430
Msp20I	TGGCCA	1 cut(s)	540
MspA1I	CMGCKG	2 cut(s)	824, 847
MspI	CCGG	7 cut(s)	120, 138, 210, 249, 255, 282, 518
MspR9I	CCNGG	6 cut(s)	44, 211, 255, 1330, 1494, 1509
MunI	CAATTG	1 cut(s)	1518
Mva1269I	GAATGC	1 cut(s)	1188
MvaI	CCWGG	4 cut(s)	44, 1330, 1494, 1509
MvnI	CGCG	1 cut(s)	243
NarI	GGCGCC	3 cut(s)	50, 195, 207
NciI	CCSGG	2 cut(s)	211, 255
NdeI	CATATG	1 cut(s)	793
NdeII	GATC	3 cut(s)	213, 918, 1651
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	8 cut(s)	169, 536, 658, 1368, 1552, 1577, 1584, 1649
NlaIV	GGNNCC	9 cut(s)	51, 124, 196, 208, 232, 253, 933, 1515, 1689
NmeAIII	GCCGAG	2 cut(s)	141, 165
NmuCI	GTSAC	4 cut(s)	11, 223, 259, 475
NsiI	ATGCAT	2 cut(s)	1538, 1630
NspI	RCATGY	3 cut(s)	169, 1368, 1552
PaeI	GCATGC	1 cut(s)	1368
PagI	TCATGA	1 cut(s)	654
PciI	ACATGT	1 cut(s)	1548
PciSI	GCTCTTC	1 cut(s)	1290
PcsI	WCGNNNNNNNCGW	2 cut(s)	374, 684
PctI	GAATGC	1 cut(s)	1188
PfeI	GAWTC	3 cut(s)	632, 830, 1398
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	7 cut(s)	49, 442, 875, 1270, 1714, 1717, 1720
PleI	GAGTC	4 cut(s)	110, 141, 724, 1394
PluTI	GGCGCC	3 cut(s)	53, 198, 210
PpsI	GAGTC	4 cut(s)	110, 141, 724, 1394
Ppu21I	YACGTR	1 cut(s)	369
PscI	ACATGT	1 cut(s)	1548
PshAI	GACNNNNGTC	1 cut(s)	249
Psp6I	CCWGG	4 cut(s)	42, 1328, 1492, 1507
PspGI	CCWGG	4 cut(s)	42, 1328, 1492, 1507
PspN4I	GGNNCC	9 cut(s)	51, 124, 196, 208, 232, 253, 933, 1515, 1689
PspPI	GGNCC	2 cut(s)	84, 251
PsrI	GAACNNNNNNTAC	2 cut(s)	362, 394
PstI	CTGCAG	2 cut(s)	1663, 1717
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	8 cut(s)	130, 157, 359, 371, 548, 933, 1131, 1524
RsaNI	GTAC	8 cut(s)	129, 156, 358, 370, 547, 932, 1130, 1523
RseI	CAYNNNNRTG	2 cut(s)	926, 1430
SapI	GCTCTTC	1 cut(s)	1290
SaqAI	TTAA	5 cut(s)	299, 504, 753, 1010, 1206
SatI	GCNGC	7 cut(s)	48, 441, 874, 1269, 1713, 1716, 1719
Sau3AI	GATC	3 cut(s)	213, 918, 1651
Sau96I	GGNCC	2 cut(s)	84, 251
SchI	GAGTC	4 cut(s)	110, 141, 724, 1395
ScrFI	CCNGG	6 cut(s)	44, 211, 255, 1330, 1494, 1509
SduI	GDGCHC	2 cut(s)	1462, 1690
SfaNI	GCATC	8 cut(s)	796, 873, 946, 961, 1280, 1313, 1545, 1614
SfcI	CTRYAG	4 cut(s)	606, 1393, 1659, 1713
SfoI	GGCGCC	3 cut(s)	51, 196, 208
SinI	GGWCC	2 cut(s)	84, 251
SmiMI	CAYNNNNRTG	2 cut(s)	926, 1430
SphI	GCATGC	1 cut(s)	1368
Sse9I	AATT	8 cut(s)	480, 585, 724, 817, 941, 995, 1518, 1749
SsiI	CCGC	9 cut(s)	27, 47, 90, 241, 317, 847, 1333, 1471, 1702
SspDI	GGCGCC	3 cut(s)	49, 194, 206
SspMI	CTAG	4 cut(s)	323, 485, 1052, 1125
StyD4I	CCNGG	6 cut(s)	42, 209, 253, 1328, 1492, 1507
StyI	CCWWGG	3 cut(s)	550, 946, 984
TaaI	ACNGT	9 cut(s)	235, 265, 546, 760, 778, 1119, 1531, 1615, 1726
TaiI	ACGT	2 cut(s)	371, 1328
TaqI	TCGA	2 cut(s)	454, 1075
TasI	AATT	8 cut(s)	480, 585, 724, 817, 941, 995, 1518, 1749
TatI	WGTACW	1 cut(s)	1129
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	632, 830, 1398
Tru1I	TTAA	5 cut(s)	299, 504, 753, 1010, 1206
Tru9I	TTAA	5 cut(s)	299, 504, 753, 1010, 1206
TscAI	CASTG	6 cut(s)	232, 928, 1021, 1122, 1375, 1731
TseFI	GTSAC	4 cut(s)	11, 223, 259, 475
TseI	GCWGC	6 cut(s)	440, 873, 1268, 1712, 1715, 1718
Tsp45I	GTSAC	4 cut(s)	11, 223, 259, 475
TspDTI	ATGAA	6 cut(s)	262, 643, 1145, 1345, 1398, 1590
TspGWI	ACGGA	2 cut(s)	34, 143
TspRI	CASTG	6 cut(s)	232, 928, 1021, 1122, 1375, 1731
VpaK11BI	GGWCC	2 cut(s)	84, 251
XapI	RAATTY	3 cut(s)	941, 995, 1749
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	3 cut(s)	169, 1368, 1552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XspI	CTAG	4 cut(s)	323, 485, 1052, 1125
Zsp2I	ATGCAT	2 cut(s)	1538, 1630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.