Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006865

Physical Location & Seq

Genomic Coordinates Forward (+)

25823099 .. 25823404

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0186700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAATTGCTTCATGTCAAGACCATTGAAACTCTACAGTGCATGCTAAAAGTGTTAAAAAGTGAAGATGATATCGACATTAGACAACATAAATTGGTCCAAAAAGCACTCTTCCAAGCAGTAGAACGAGGACATGCTCCATTCATCTACCACTTATTGAGACCTAATGCAAGGTTCCTTGCGATCACTAATGAACATGACAAGACCGTATTTCAATTTGCTGTTGAGCGTCGCCAAGACGAAGTTTTTAACCTGATACATGAATTTGATGAACAAAAGAGAAAAGACATTAGGCAGAAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

101

Amino Acids

12.19

Weight (kDa)

9.41

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05940 AT1G05940 AT1G05940
fragaria_vesca	FvH4_7g09870 FvH4_7g09870 FvH4_7g09870 FvH4_7g09870 FvH4_7g09870
malus_domestica	MD07G1104100.v1.1
prunus_persica	Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1
pyrus_communis	pycom07g08920
rosa_chinensis	RchiOBHm_Chr1g0347411
rosa_laevigata	RLG00000028752
rosa_multiflora	Rmu_sc0009756.1_g000002 Rmu_sc0042207.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307840
rosa_rugosa	Rorug01G0186600 Rorug01G0186700
rosa_samantha	Rh1BG169900 Rh1CG189300 Rh1DG200300
rosa_wichuraiana	Rw1G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	29, 215
Alw26I	GTCTC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	154
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	154
BssMI	GATC	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	39, 208
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	183
BstNSI	RCATGY	2 cut(s)	46, 137
BstSFI	CTRYAG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	97
CseI	GACGC	1 cut(s)	218
CviAII	CATG	5 cut(s)	14, 43, 134, 197, 260
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	73
FaeI	CATG	5 cut(s)	17, 46, 137, 200, 263
FaiI	YATR	6 cut(s)	15, 44, 90, 135, 198, 261
FatI	CATG	5 cut(s)	13, 42, 133, 196, 259
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	5 cut(s)	17, 46, 137, 200, 263
Hpy188III	TCNNGA	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	39, 208
HpyCH4V	TGCA	2 cut(s)	42, 170
Hsp92II	CATG	5 cut(s)	17, 46, 137, 200, 263
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	1 cut(s)	266
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	2 cut(s)	77, 103
MluCI	AATT	4 cut(s)	5, 92, 215, 263
MnlI	CCTC	1 cut(s)	122
MseI	TTAA	2 cut(s)	56, 249
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	5 cut(s)	17, 46, 137, 200, 263
NlaIV	GGNNCC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	46, 137
PaeI	GCATGC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	56, 249
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	97
SetI	ASST	3 cut(s)	166, 176, 255
SfcI	CTRYAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	97
SphI	GCATGC	1 cut(s)	46
Sse9I	AATT	4 cut(s)	5, 92, 215, 263
TaaI	ACNGT	2 cut(s)	39, 208
TaqI	TCGA	1 cut(s)	75
TasI	AATT	4 cut(s)	5, 92, 215, 263
Tru1I	TTAA	2 cut(s)	56, 249
Tru9I	TTAA	2 cut(s)	56, 249
TscAI	CASTG	1 cut(s)	44
TspDTI	ATGAA	5 cut(s)	17, 133, 207, 276, 285
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	2 cut(s)	46, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.