Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006865

Physical Location & Seq

Genomic Coordinates Forward (+)

25812532 .. 25816240

Gene Structure 3709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0186600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCAGCCACAGTAGTCCCTAGTGTAATGGTTAATATTAAAGCTCTTGACCAAGATAACTACGACTACTGGTTCTTTCGAGTGAAAACATACTTGATGGCTGAAGGTTTGTGGGATGTTGTCGATGGAACAAATATACCTCCAACAGTAGAAGACCCTAAATTCATGGCTTGGCAGAAAAATAATGCCAGGGCCTTGCAAGCTATCATCATATTTTGCGGGGAGGATGCTGAGTTGTTTATTAAATACATCACGACGGCAAAAGATGCCTGGGATATTTTGGTAAAACAGTTCAAGCCTTCTGAAATTTTAGAAACTCCAGAAGAAATATCTGAAGTTGACTCGAATGACAGCTCCAGCTCAATTGATGGTGATGAAGACTCGGAAGTACAAGTTGCTGGAGCACATGCACATTTCTTTGAGGAGGTCCACGCCCGGAATTGGGAAGCTGTAAAGGAGCTTATTCGCGGAAATCGACGGGCAATAAGAGCAAAATCTCAAAACACCGACAAGACAGCTCTTCACTTTGCGGTCCAGTTCGGGGACGTAAACGGTGTAAAAGCGTTGCTACCGTTTATGGAAAACAAAGACTTAGAAATGCTAGACCGTGATGGACATACTCCTCTTTCTATGGCTATACTAGAAAAGGATACAGATGTGATGACCAAAATTGCTACGTGCATGGTTGAGAAGAACAAGGAACTACTCCTTCGTATTGTCGATCCTTCCACCGATACTATTCCACTCTTGATGGCTCTGAGGCTGGACAGACCAAAAATGGCTGCTTATCTCTATAGTACTACTCCACTTGAAAAGCTTAAGAAAAGGGACCAAGCTGAGCTAATTTCCACAAGTTTGAGAGTAAAATATATAGATACTTCGTTGGACTTAATACGGCGTTTTCCAAGCTTGGCTATTGCTCAAGACCACTCTGGTGAATCCCCTTTAAATGCATTGGCTAATACGGCTGGATTATTCAAAAATGCTAGCCAGCTCGGAATATGGGAACGATGGATTTATAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2 AA_permease_C

Protein Analysis

342

Amino Acids

38.68

Weight (kDa)

5.03

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	29 - 101	5.7e-08	gag-polypeptide of LTR copia-type
Ank_2	PF12796	148 - 225	1.2e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05940 AT1G05940 AT1G05940
fragaria_vesca	FvH4_7g09870 FvH4_7g09870 FvH4_7g09870 FvH4_7g09870 FvH4_7g09870
malus_domestica	MD07G1104100.v1.1
prunus_persica	Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1 Prupe.2G127800_v2.0.a1
pyrus_communis	pycom07g08920
rosa_chinensis	RchiOBHm_Chr1g0347411
rosa_laevigata	RLG00000028752
rosa_multiflora	Rmu_sc0009756.1_g000002 Rmu_sc0042207.1_g000001
rosa_roxburghii	Rroxscaffold_4G00307840
rosa_rugosa	Rorug01G0186600 Rorug01G0186700
rosa_samantha	Rh1BG169900 Rh1CG189300 Rh1DG200300
rosa_wichuraiana	Rw1G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1020
AccII	CGCG	1 cut(s)	468
AciI	CCGC	3 cut(s)	219, 468, 530
AclWI	GGATC	1 cut(s)	716
AcsI	RAATTY	2 cut(s)	161, 306
AcuI	CTGAAG	2 cut(s)	123, 354
AfaI	GTAC	2 cut(s)	390, 799
AfiI	CCNNNNNNNGG	3 cut(s)	441, 442, 541
AflII	CTTAAG	1 cut(s)	818
AgsI	TTSAA	3 cut(s)	295, 812, 979
AjnI	CCWGG	2 cut(s)	188, 269
AleI	CACNNNNGTG	1 cut(s)	933
Alw21I	GWGCWC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	716
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	5, 782
ApoI	RAATTY	2 cut(s)	161, 306
AspS9I	GGNCC	4 cut(s)	192, 427, 532, 829
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	383, 947
AsuNHI	GCTAGC	1 cut(s)	986
AvaII	GGWCC	3 cut(s)	427, 532, 829
BaeI	ACNNNNGTAYC	2 cut(s)	642, 675
BbsI	GAAGAC	2 cut(s)	159, 384
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	17, 769
BccI	CCATC	6 cut(s)	91, 119, 362, 605, 745, 1005
BceAI	ACGGC	3 cut(s)	273, 911, 981
BciT130I	CCWGG	2 cut(s)	190, 271
BciVI	GTATCC	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	436
BfaI	CTAG	4 cut(s)	21, 602, 641, 987
BfmI	CTRYAG	1 cut(s)	793
BfrI	CTTAAG	1 cut(s)	818
BfuI	GTATCC	1 cut(s)	643
BisI	GCNGC	2 cut(s)	6, 783
BlpI	GCTNAGC	1 cut(s)	837
BlsI	GCNGC	2 cut(s)	7, 784
BmcAI	AGTACT	1 cut(s)	799
Bme1390I	CCNGG	3 cut(s)	190, 271, 436
Bme18I	GGWCC	3 cut(s)	427, 532, 829
BmgT120I	GGNCC	4 cut(s)	192, 427, 532, 829
BmiI	GGNNCC	1 cut(s)	830
BmrFI	CCNGG	3 cut(s)	190, 271, 436
BmsI	GCATC	2 cut(s)	217, 256
BmtI	GCTAGC	1 cut(s)	990
BpiI	GAAGAC	2 cut(s)	159, 384
BpmI	CTGGAG	3 cut(s)	303, 340, 420
Bpu1102I	GCTNAGC	1 cut(s)	837
BpuEI	CTTGAG	1 cut(s)	906
BpuMI	CCSGG	1 cut(s)	436
BsaAI	YACGTR	1 cut(s)	678
BsaJI	CCNNGG	2 cut(s)	189, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 442, 541
Bse1I	ACTGG	2 cut(s)	74, 535
BseBI	CCWGG	2 cut(s)	190, 271
BseDI	CCNNGG	2 cut(s)	189, 270
BseGI	GGATG	2 cut(s)	121, 232
BseLI	CCNNNNNNNGG	3 cut(s)	441, 442, 541
BseMII	CTCAG	3 cut(s)	222, 749, 828
BseNI	ACTGG	2 cut(s)	74, 535
BseRI	GAGGAG	2 cut(s)	437, 612
BseXI	GCAGC	2 cut(s)	17, 769
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	3 cut(s)	2, 557, 842
BslI	CCNNNNNNNGG	3 cut(s)	441, 442, 541
BsmFI	GGGAC	3 cut(s)	2, 557, 842
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	721
Bsp1720I	GCTNAGC	1 cut(s)	837
BspACI	CCGC	3 cut(s)	219, 468, 530
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	3 cut(s)	223, 750, 829
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	830
BspOI	GCTAGC	1 cut(s)	990
BspPI	GGATC	1 cut(s)	716
BspQI	GCTCTTC	1 cut(s)	525
BspTI	CTTAAG	1 cut(s)	818
BsrI	ACTGG	2 cut(s)	74, 535
BssECI	CCNNGG	2 cut(s)	189, 270
BssMI	GATC	1 cut(s)	721
Bst2UI	CCWGG	2 cut(s)	190, 271
Bst4CI	ACNGT	6 cut(s)	13, 148, 291, 554, 573, 608
Bst6I	CTCTTC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	818
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	678
BstC8I	GCNNGC	3 cut(s)	201, 988, 992
BstDEI	CTNAG	4 cut(s)	231, 592, 758, 837
BstF5I	GGATG	2 cut(s)	121, 232
BstFNI	CGCG	1 cut(s)	468
BstKTI	GATC	1 cut(s)	724
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 266, 488, 965
BstNI	CCWGG	2 cut(s)	190, 271
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	3 cut(s)	188, 269, 434
BstSFI	CTRYAG	1 cut(s)	793
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	17, 769
BstV2I	GAAGAC	2 cut(s)	159, 384
BsuI	GTATCC	1 cut(s)	643
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	121, 232
Cac8I	GCNNGC	3 cut(s)	201, 988, 992
Cfr13I	GGNCC	4 cut(s)	192, 427, 532, 829
Csp6I	GTAC	2 cut(s)	389, 798
CviAII	CATG	3 cut(s)	166, 407, 682
CviQI	GTAC	2 cut(s)	389, 798
DdeI	CTNAG	4 cut(s)	231, 592, 758, 837
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
DraI	TTTAAA	1 cut(s)	948
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco47I	GGWCC	3 cut(s)	427, 532, 829
Eco57I	CTGAAG	2 cut(s)	123, 354
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	188, 269
EcoT22I	ATGCAT	1 cut(s)	955
FaeI	CATG	3 cut(s)	169, 410, 685
FaqI	GGGAC	3 cut(s)	2, 557, 842
FatI	CATG	3 cut(s)	165, 406, 681
FauI	CCCGC	1 cut(s)	212
Fnu4HI	GCNGC	2 cut(s)	6, 783
FokI	GGATG	2 cut(s)	128, 239
Fsp4HI	GCNGC	2 cut(s)	6, 783
FspBI	CTAG	4 cut(s)	21, 602, 641, 987
GluI	GCNGC	2 cut(s)	6, 783
GsuI	CTGGAG	3 cut(s)	303, 340, 420
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	3 cut(s)	169, 410, 685
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	2 cut(s)	815, 907
HinfI	GANTC	3 cut(s)	341, 380, 938
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	2 cut(s)	383, 947
Hpy166II	GTNNAC	3 cut(s)	340, 430, 550
Hpy188I	TCNGA	5 cut(s)	304, 334, 385, 759, 998
Hpy188III	TCNNGA	5 cut(s)	47, 253, 320, 748, 923
Hpy8I	GTNNAC	3 cut(s)	340, 430, 550
Hpy99I	CGWCG	2 cut(s)	259, 480
HpyAV	CCTTC	4 cut(s)	98, 309, 719, 735
HpyCH4III	ACNGT	6 cut(s)	13, 148, 291, 554, 573, 608
HpyCH4IV	ACGT	2 cut(s)	546, 677
HpyCH4V	TGCA	4 cut(s)	199, 410, 681, 953
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 266, 488, 965
HpyF3I	CTNAG	4 cut(s)	231, 592, 758, 837
HpySE526I	ACGT	2 cut(s)	546, 677
Hsp92II	CATG	3 cut(s)	169, 410, 685
Kzo9I	GATC	1 cut(s)	721
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	3 cut(s)	359, 401, 457
Lsp1109I	GCAGC	2 cut(s)	17, 769
LweI	GCATC	2 cut(s)	217, 256
MaeI	CTAG	4 cut(s)	21, 602, 641, 987
MaeII	ACGT	2 cut(s)	546, 677
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	5 cut(s)	164, 335, 389, 512, 703
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	7 cut(s)	161, 306, 363, 439, 669, 843, 1021
MlyI	GAGTC	2 cut(s)	335, 374
MmeI	TCCRAC	2 cut(s)	167, 864
MnlI	CCTC	6 cut(s)	150, 217, 415, 418, 633, 753
Mph1103I	ATGCAT	1 cut(s)	955
MseI	TTAA	6 cut(s)	33, 39, 243, 819, 890, 947
MslI	CAYNNNNRTG	1 cut(s)	933
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	3 cut(s)	190, 271, 436
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	190, 271
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	4 cut(s)	200, 266, 488, 965
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	1 cut(s)	721
NheI	GCTAGC	1 cut(s)	986
NlaIII	CATG	3 cut(s)	169, 410, 685
NlaIV	GGNNCC	1 cut(s)	830
NsiI	ATGCAT	1 cut(s)	955
NspI	RCATGY	1 cut(s)	410
OliI	CACNNNNGTG	1 cut(s)	933
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	938
PkrI	GCNGC	2 cut(s)	7, 784
PleI	GAGTC	2 cut(s)	335, 374
PpsI	GAGTC	2 cut(s)	335, 374
Ppu21I	YACGTR	1 cut(s)	678
PsiI	TTATAA	1 cut(s)	1020
Psp6I	CCWGG	2 cut(s)	188, 269
PspGI	CCWGG	2 cut(s)	188, 269
PspN4I	GGNNCC	1 cut(s)	830
PspPI	GGNCC	4 cut(s)	192, 427, 532, 829
RsaI	GTAC	2 cut(s)	390, 799
RsaNI	GTAC	2 cut(s)	389, 798
RseI	CAYNNNNRTG	1 cut(s)	933
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	6 cut(s)	33, 39, 243, 819, 890, 947
SatI	GCNGC	2 cut(s)	6, 783
Sau3AI	GATC	1 cut(s)	721
Sau96I	GGNCC	4 cut(s)	192, 427, 532, 829
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	2 cut(s)	335, 374
ScrFI	CCNGG	3 cut(s)	190, 271, 436
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	217, 256
SfcI	CTRYAG	1 cut(s)	793
SinI	GGWCC	3 cut(s)	427, 532, 829
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	2 cut(s)	818, 921
SmoI	CTYRAG	2 cut(s)	818, 921
Sse9I	AATT	7 cut(s)	161, 306, 363, 439, 669, 843, 1021
SsiI	CCGC	3 cut(s)	219, 468, 530
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	4 cut(s)	21, 602, 641, 987
StyD4I	CCNGG	3 cut(s)	188, 269, 434
TaaI	ACNGT	6 cut(s)	13, 148, 291, 554, 573, 608
TaiI	ACGT	2 cut(s)	549, 680
TaqI	TCGA	5 cut(s)	79, 123, 344, 475, 720
TasI	AATT	7 cut(s)	161, 306, 363, 439, 669, 843, 1021
TatI	WGTACW	2 cut(s)	388, 797
TfiI	GAWTC	1 cut(s)	938
Tru1I	TTAA	6 cut(s)	33, 39, 243, 819, 890, 947
Tru9I	TTAA	6 cut(s)	33, 39, 243, 819, 890, 947
TseI	GCWGC	2 cut(s)	5, 782
TspDTI	ATGAA	2 cut(s)	154, 390
Vha464I	CTTAAG	1 cut(s)	818
VpaK11BI	GGWCC	3 cut(s)	427, 532, 829
XapI	RAATTY	2 cut(s)	161, 306
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	4 cut(s)	21, 602, 641, 987
ZrmI	AGTACT	1 cut(s)	799
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.