Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042953.1

Orthogroup ID

OG0005290

Physical Location & Seq

Genomic Coordinates Reverse (-)

497 .. 754

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042953.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgtttcccgaggttcctattgcactcagaatgtcagggcaccttctcctaggggttgttcggatttactcaaagaaagtcgagtatcttcaccaggactgtaacgttgtattgaatggcctcaaaaaggcctttgcttctatagacttgagtttgccagagaacgcaatgcaagcaccgcttcagtctatcactttgcctgaaacattatgccttgatgctttggattgcggtcccgactttgattatgacgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

85

Amino Acids

9.36

Weight (kDa)

4.64

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59550 AT4G05360
fragaria_vesca	FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520
malus_domestica	MD02G1316900.v1.1 MD07G1005000.v1.1
prunus_persica	Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1
pyrus_communis	pycom07g00410
rosa_chinensis	RchiOBHm_Chr1g0314311
rosa_laevigata	RLG00000030767
rosa_multiflora	Rmu_sc0000343.1_g000013 Rmu_sc0002833.1_g000005 Rmu_sc0042953.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331970
rosa_rugosa	Rorug01G0000900 Rorug01G0000900
rosa_samantha	Rh1AG010000 Rh1BG002900 Rh1CG010300 Rh1DG005400
rosa_wichuraiana	Rw1G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AciI	CCGC	2 cut(s)	179, 231
AclI	AACGTT	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	118, 129
AspA2I	CCTAGG	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	233
AvrII	CCTAGG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	95
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	141
BlnI	CCTAGG	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	15, 41, 235
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	9, 49
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	9, 49
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	42
BshFI	GGCC	2 cut(s)	120, 131
BshNI	GGYRCC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	120, 131
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	179, 231
BspANI	GGCC	2 cut(s)	120, 131
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	15, 41, 235
BspT107I	GGYRCC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	9, 49
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	26
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 178
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	120, 131
Cac8I	GCNNGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	233
CviJI	RGCY	2 cut(s)	120, 131
CviKI_1	RGCY	2 cut(s)	120, 131
DdeI	CTNAG	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	8
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaiI	YATR	3 cut(s)	143, 211, 249
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	120, 131
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	29, 63
Hpy188III	TCNNGA	2 cut(s)	8, 236
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	23, 172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 178
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	105
LpnPI	CCDG	5 cut(s)	21, 80, 107, 171, 213
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	101
MboII	GAAGA	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	4, 131
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	173, 178
NlaIV	GGNNCC	3 cut(s)	15, 41, 235
PceI	AGGCCT	1 cut(s)	131
Psp1406I	AACGTT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	3 cut(s)	15, 41, 235
PspPI	GGNCC	1 cut(s)	233
Sau96I	GGNCC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	3 cut(s)	15, 45, 108
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	2 cut(s)	179, 231
SspMI	CTAG	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	125
XmaJI	CCTAGG	1 cut(s)	49
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.