Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005290

Physical Location & Seq

Genomic Coordinates Reverse (-)

304398 .. 308154

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0000900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTTGAAGCGGAAGGCGTCACGGAAGAAGATGTTCTCCCCCATCATCTCCGGTACGAGCCCCTCAAGGCCATCACCGACCATAATCCAAGCGGTTGTCATTAGGTCTGGGAGACCAATCTCTAGTCCAAGGTTGACCCAAATTTCAAAACAGGCGGAGGAGACCACAGTAGTGATCCATTTGAGGCTACGTCATCGAGTTTCGTCACAAACCTACAGTCTCAATGCGAATCTCTGCCATCTTCGTCTCTATCAGGTTCATCGAGATGATTTTATGCTGAATGTGAAACTTCGGCTGTTTGTTCTTATTGCAAAGCAACCAGCCTTCCATCAGCTTAGATCAGTTGAGCAACTTGGTTACTTAACTGCTCCAAGTTCATGCCATCTGCTTTTACAGAGGAATGATTGTGGTATCCGAGGACTGCAGTTTATTATACAATCTGCAGTGAAGGGTCCAGGACATATTGATTTGAGAGTGGAGGAATTTCTCAAGACTTTTGAGAGTAAGCTTTATGAGATGACAAATGACAAATTCAAGCTTCGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

182

Amino Acids

20.93

Weight (kDa)

10.68

Isoelectric Point (pI)

68.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PqqF-like_C_4	PF22456	103 - 179	1.1e-12	PQQ synthase PqqF-like, C-terminal lobe domain 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59550 AT4G05360
fragaria_vesca	FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520
malus_domestica	MD02G1316900.v1.1 MD07G1005000.v1.1
prunus_persica	Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1
pyrus_communis	pycom07g00410
rosa_chinensis	RchiOBHm_Chr1g0314311
rosa_laevigata	RLG00000030767
rosa_multiflora	Rmu_sc0000343.1_g000013 Rmu_sc0002833.1_g000005 Rmu_sc0042953.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331970
rosa_rugosa	Rorug01G0000900 Rorug01G0000900
rosa_samantha	Rh1AG010000 Rh1BG002900 Rh1CG010300 Rh1DG005400
rosa_wichuraiana	Rw1G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	10, 92, 155
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	3 cut(s)	141, 482, 530
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	7, 147, 535
AjnI	CCWGG	1 cut(s)	454
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	3 cut(s)	334, 508, 538
AluI	AGCT	3 cut(s)	334, 508, 538
Alw26I	GTCTC	4 cut(s)	106, 155, 224, 251
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	68
ApoI	RAATTY	3 cut(s)	141, 482, 530
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	62
BccI	CCATC	5 cut(s)	50, 79, 246, 336, 390
BciT130I	CCWGG	1 cut(s)	456
BciVI	GTATCC	1 cut(s)	422
BcoDI	GTCTC	4 cut(s)	106, 155, 224, 251
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	3 cut(s)	214, 422, 441
BfuI	GTATCC	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	456
BpuEI	CTTGAG	2 cut(s)	49, 473
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	2 cut(s)	106, 155
BsaJI	CCNNGG	2 cut(s)	128, 415
BsaWI	WCCGGW	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	128, 415
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	51
BsmAI	GTCTC	4 cut(s)	106, 155, 224, 251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	2 cut(s)	106, 155
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	174, 338
BspACI	CCGC	3 cut(s)	10, 92, 155
BspANI	GGCC	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	453
BspMAI	CTGCAG	2 cut(s)	426, 445
BspPI	GGATC	1 cut(s)	169
BspTNI	GGTCTC	2 cut(s)	106, 155
BssECI	CCNNGG	2 cut(s)	128, 415
BssMI	GATC	2 cut(s)	174, 338
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	169, 218
BstACI	GRCGYC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	335
BstKTI	GATC	2 cut(s)	177, 341
BstMAI	GTCTC	4 cut(s)	106, 155, 224, 251
BstMBI	GATC	2 cut(s)	174, 338
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	3 cut(s)	214, 422, 441
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	378
CviJI	RGCY	8 cut(s)	60, 70, 187, 295, 323, 334, 508, 538
CviKI_1	RGCY	8 cut(s)	60, 70, 187, 295, 323, 334, 508, 538
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	2 cut(s)	176, 340
DpnII	GATC	2 cut(s)	174, 338
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	2 cut(s)	106, 155
Eco47I	GGWCC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	1 cut(s)	381
FaiI	YATR	6 cut(s)	83, 275, 379, 434, 462, 513
FatI	CATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	62
FspBI	CTAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HindIII	AAGCTT	2 cut(s)	506, 536
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	2 cut(s)	416, 543
Hpy188III	TCNNGA	2 cut(s)	263, 490
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	3 cut(s)	7, 334, 442
HpyCH4III	ACNGT	2 cut(s)	169, 218
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	311, 424, 443
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	190
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	174, 338
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	7 cut(s)	64, 93, 137, 239, 333, 441, 468
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	3 cut(s)	18, 204, 356
MalI	GATC	2 cut(s)	176, 340
MboI	GATC	2 cut(s)	174, 338
MboII	GAAGA	3 cut(s)	37, 40, 233
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	3 cut(s)	141, 482, 530
MnlI	CCTC	6 cut(s)	73, 151, 177, 390, 410, 472
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	2 cut(s)	170, 264
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
NdeII	GATC	2 cut(s)	174, 338
NlaIII	CATG	1 cut(s)	381
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	2 cut(s)	18, 204
OliI	CACNNNNGTG	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	454
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	2 cut(s)	426, 445
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	2 cut(s)	170, 264
SaqAI	TTAA	1 cut(s)	362
Sau3AI	GATC	2 cut(s)	174, 338
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	8 cut(s)	107, 134, 193, 215, 258, 336, 510, 540
SfcI	CTRYAG	3 cut(s)	214, 422, 441
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	170, 264
SmlI	CTYRAG	2 cut(s)	64, 488
SmoI	CTYRAG	2 cut(s)	64, 488
Sse9I	AATT	3 cut(s)	141, 482, 530
SsiI	CCGC	3 cut(s)	10, 92, 155
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	169, 218
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	196, 262
TasI	AATT	3 cut(s)	141, 482, 530
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	2 cut(s)	18, 204
Tsp45I	GTSAC	2 cut(s)	18, 204
TspDTI	ATGAA	2 cut(s)	248, 366
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	3 cut(s)	141, 482, 530
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.