Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005290

Physical Location & Seq

Genomic Coordinates Reverse (-)

1587333 .. 1593297

Gene Structure 5965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG010000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2250 bp

ATGTTCTACTCGCACACAATCTTGGCTCGGAAGGGCCCATTGGGAACCGTATGGTGCGCTGCCCATCTGCAGCACAGACTCAAGAAGTCCCATTACGCCGCCACCGACATCCCCTCCACCGTCGATCGCATCATGTTTCCCGAGGTTCCTATTGCACTCAGAATGTCGGGGCACCTTCTACTAGGGGTTGTTCGGATTTACTCAAAGAAAGTCGAGTATCTTCACCAGGACTGTAACGTTGTATTGAATGGCCTCAAAAAGGCCTTTGCTTCTATAGACTTGAGCTTGCCAGAGAACGCAATGCAAGCACCGCTTCAGTCTATCACTTTGCCTGAAACATTATGCCTTGATGCTTTGGATTGCGGTCCCGACTTTGATTATGACGGGGCTCACAATGATCATCTAGGGAATCAGGAGGACATCACGTTAACAGAACAATTTCCCATTGCAACAAACCCTTATGTTGCTATAACTTTTGATGAGGATATCCGGATGGAGGATCTATCGCATCAAATGGAGGATTTTGGTTCACATGTTACCCCTATGGATGTGGACACCATCCCCCCACATCCGGAACAGGGTACTCATAGTCCGGTCAATCTGACAGATGAACGAACAACACATAATGACGAGGTAAACCTTCAAGGTTCTCAAGGAATTTCTGGTGTTCCTAGTCCGACAGACGAACAACGGAGGCCTAGCGATGATTTTACCCTTCCAGACTGTCCAGAAAAGGAGACTCAGAAGGATTTTGGATGTCAAGATCCTGGACCCAGTCAGCCTACAGAAATTCTTAATTTGAGTCATAGAGACTACAGTTCCCCTGAAAATGTTCCAGAAATAGAAGCTCAACGCAATGCAGTTTCTGATATTAGCTCAGAAACCTTTCCATTTTCTTCCAGTCATAGGAATGATGTTACTGAACAACATGACCCACCAACAAATGAGAAAGCCATTCTTTCTCCAATTATGGAAGGAAGTATACATTCTGTTGGGCCATCTCCAGCGGTCCAGCCAAGTTCAGAAACACCAGCTTCTGTTGCTTCTTTGTCAGAGGGCCGACAGCATATTAATACATCTGTTTCAGTTGCAATCCAATCAACACCTCGTATTGAACAGCCACCTCTTGAACAGCCACTTATTGAGCAGCCAAGACCAAGGAAAAGAAAAAAGCAGTACTTTGATGATCCTGTTGTATTATCTAATAAGTTTATTGGGAAGAGACTTAAAGATGCCAGTGATATAATCCGCAAAAGGAAGAAACTTCCGTCCTCTGCATTGGGTATTTGGAAGTTGAAAAACGTTTTAAGAAAGGAACAAGTGTTCCTTCAGCCTTCATTAACCAGGTTGTGCTCTGATCTTAGTAACATTTACGACAAAACATACATATCTACAAAATCCCATTTGTTTGAGGAAGCTCTTCCAGACCCTAGGCCAACGTCTCCTTCTCCCACAACCGAAGTGGTCTCAGAAGATGGGGCTGTGGTGTCTCCTCTTCCTCCTTTCTCTCCTCTTACAATTGATGTCTCCCTAGAGCACAGGGTTGGAGACTCTGTCCCTGCCAATGAATCTTCGCCAGTGAAGGGTCTACAATCCCCTTCTTCTCCTGCAACTGGGTCTGGCCAAGACGCTGAACAATTTAGAGGTGTCGAACATGATGGGGTTTTACCCGATTCGCCTACAATCAAGCATTCTCTGATGATAGATGACTTTACTCCTGCCCCATCACCAAAAGTGGGATCAGCTTCAGTTCATTCATTGGAAATAAATACCGGAACTCAAATACTGCAGACACCAGATTTACAAGTGTCAGCTGGATCTGAATTTGGAACACTGACAATGTTAGGAGAGGGTGGGGTACACCCTGATTACACTGGTCCTTCACATAACCCTGAGTCAATGACTGCAGAAGCAGAAGATCTTTGGTTTCTGGAAGCAGATGATCGTACACCAGCTGGTTCTCAAGGGACAGAAGGAGTTGATTCATTGTCGGTCAGAACCAGGGCTGTAGCTCAATATTTGAAAAGCCAATCTCCAGAAGACCTATCCAGTGATCTCAGCTTGAACAAAATTTTAGAAGGAAAAAGAAGAAAGCTATGTGCTCGAATGTTCTTTGAAACACTGGTCTTGAAGAGTTATGATCTTATTGATGAATTGCCAGGTCACAGAATAAAGAAGGGAGCTCAGGAGTTTGTACAGCAATTGCAAAGAAATTTTGATCTTATAGAGAAGTTTAGTCCACATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

749

Amino Acids

82.43

Weight (kDa)

5.09

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 100	5.3e-37	N terminus of Rad21 / Rec8 like protein
Rad21_Rec8	PF04824	685 - 717	6.3e-09	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59550 AT4G05360
fragaria_vesca	FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520 FvH4_7g00520
malus_domestica	MD02G1316900.v1.1 MD07G1005000.v1.1
prunus_persica	Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1 Prupe.2G007300_v2.0.a1
pyrus_communis	pycom07g00410
rosa_chinensis	RchiOBHm_Chr1g0314311
rosa_laevigata	RLG00000030767
rosa_multiflora	Rmu_sc0000343.1_g000013 Rmu_sc0002833.1_g000005 Rmu_sc0042953.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331970
rosa_rugosa	Rorug01G0000900 Rorug01G0000900
rosa_samantha	Rh1AG010000 Rh1BG002900 Rh1CG010300 Rh1DG005400
rosa_wichuraiana	Rw1G000450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	171
AccI	GTMKAC	2 cut(s)	982, 1588
AccIII	TCCGGA	2 cut(s)	489, 571
AciI	CCGC	5 cut(s)	99, 311, 363, 1007, 1249
AclI	AACGTT	2 cut(s)	237, 1302
AclWI	GGATC	5 cut(s)	507, 758, 1181, 1747, 1825
AcoI	YGGCCR	1 cut(s)	1621
AcsI	RAATTY	5 cut(s)	657, 789, 1823, 2070, 2212
AcuI	CTGAAG	3 cut(s)	299, 1313, 1731
AfaI	GTAC	5 cut(s)	583, 1178, 1860, 1948, 2196
AfiI	CCNNNNNNNGG	8 cut(s)	259, 496, 571, 578, 906, 1583, 1613, 1736
AflIII	ACRYGT	2 cut(s)	532, 2242
AgsI	TTSAA	9 cut(s)	247, 644, 1115, 1130, 1297, 2023, 2065, 2117, 2131
AjnI	CCWGG	5 cut(s)	225, 766, 1343, 2000, 2158
AjuI	GAANNNNNNNTTGG	4 cut(s)	23, 55, 1429, 1461
AloI	GAACNNNNNNTCC	4 cut(s)	1307, 1308, 1339, 1340
Alw21I	GWGCWC	4 cut(s)	1355, 1539, 2104, 2185
Alw26I	GTCTC	8 cut(s)	731, 804, 1216, 1446, 1471, 1494, 1531, 1542
AlwI	GGATC	5 cut(s)	507, 758, 1181, 1747, 1825
AlwNI	CAGNNNCTG	2 cut(s)	866, 1037
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	2 cut(s)	489, 571
AoxI	GGCC	8 cut(s)	34, 250, 261, 695, 995, 1057, 1433, 1621
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	3 cut(s)	59, 70, 1147
ApoI	RAATTY	5 cut(s)	657, 789, 1823, 2070, 2212
AseI	ATTAAT	1 cut(s)	1071
Asp700I	GAANNNNTTC	4 cut(s)	438, 831, 885, 1419
AspA2I	CCTAGG	1 cut(s)	1430
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	8 cut(s)	34, 35, 365, 770, 995, 1009, 1057, 1877
AsuHPI	GGTGA	2 cut(s)	215, 1719
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	4 cut(s)	365, 770, 1009, 1877
AvrII	CCTAGG	1 cut(s)	1430
BaeGI	GKGCMC	2 cut(s)	38, 174
BalI	TGGCCA	1 cut(s)	1623
BanI	GGYRCC	1 cut(s)	171
BanII	GRGCYC	3 cut(s)	38, 391, 2185
BarI	GAAGNNNNNNTAC	4 cut(s)	77, 109, 966, 998
BbsI	GAAGAC	1 cut(s)	2046
Bbv12I	GWGCWC	4 cut(s)	1355, 1539, 2104, 2185
BbvI	GCAGC	3 cut(s)	46, 82, 1159
BccI	CCATC	7 cut(s)	72, 487, 566, 1006, 1469, 1652, 1732
BciT130I	CCWGG	5 cut(s)	227, 768, 1345, 2002, 2160
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	8 cut(s)	731, 804, 1216, 1446, 1471, 1494, 1531, 1542
BfaI	CTAG	6 cut(s)	182, 404, 672, 699, 1431, 1532
BfmI	CTRYAG	7 cut(s)	68, 273, 783, 814, 1787, 1905, 2007
BglII	AGATCT	1 cut(s)	1918
BisI	GCNGC	4 cut(s)	60, 71, 99, 1148
BlnI	CCTAGG	1 cut(s)	1430
BlsI	GCNGC	4 cut(s)	61, 72, 100, 1149
BmcAI	AGTACT	1 cut(s)	1178
Bme1390I	CCNGG	5 cut(s)	227, 768, 1345, 2002, 2160
Bme18I	GGWCC	4 cut(s)	365, 770, 1009, 1877
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	8 cut(s)	34, 35, 365, 770, 995, 1009, 1057, 1877
BmiI	GGNNCC	6 cut(s)	36, 46, 147, 173, 367, 772
BmrFI	CCNGG	5 cut(s)	227, 768, 1345, 2002, 2160
BmrI	ACTGGG	2 cut(s)	768, 1623
BmsI	GCATC	4 cut(s)	138, 340, 517, 1222
BmuI	ACTGGG	2 cut(s)	768, 1623
BpiI	GAAGAC	1 cut(s)	2046
BpmI	CTGGAG	2 cut(s)	987, 2019
Bpu10I	CCTNAGC	1 cut(s)	2184
BpuEI	CTTGAG	4 cut(s)	65, 301, 636, 1947
BsaI	GGTCTC	1 cut(s)	1471
BsaJI	CCNNGG	4 cut(s)	141, 1157, 1430, 2001
BsaWI	WCCGGW	4 cut(s)	489, 571, 592, 1772
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 1539, 1569
Bsc4I	CCNNNNNNNGG	8 cut(s)	259, 496, 571, 578, 906, 1583, 1613, 1736
Bse1I	ACTGG	8 cut(s)	774, 900, 1236, 1577, 1618, 1879, 2049, 2127
Bse3DI	GCAATG	3 cut(s)	306, 444, 862
BseAI	TCCGGA	2 cut(s)	489, 571
BseBI	CCWGG	5 cut(s)	227, 768, 1345, 2002, 2160
BseDI	CCNNGG	4 cut(s)	141, 1157, 1430, 2001
BseGI	GGATG	6 cut(s)	108, 498, 553, 558, 568, 761
BseLI	CCNNNNNNNGG	8 cut(s)	259, 496, 571, 578, 906, 1583, 1613, 1736
BseMI	GCAATG	3 cut(s)	306, 444, 862
BseMII	CTCAG	7 cut(s)	172, 755, 891, 1482, 1884, 2071, 2198
BseNI	ACTGG	8 cut(s)	774, 900, 1236, 1577, 1618, 1879, 2049, 2127
BseRI	GAGGAG	2 cut(s)	1482, 1500
BseSI	GKGCMC	2 cut(s)	38, 174
BseXI	GCAGC	3 cut(s)	46, 82, 1159
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	8 cut(s)	36, 252, 263, 697, 997, 1059, 1435, 1623
BshNI	GGYRCC	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	4 cut(s)	1355, 1539, 2104, 2185
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	4 cut(s)	490, 572, 593, 1773
BslFI	GGGAC	4 cut(s)	73, 351, 1541, 1981
BslI	CCNNNNNNNGG	8 cut(s)	259, 496, 571, 578, 906, 1583, 1613, 1736
BsmAI	GTCTC	8 cut(s)	731, 804, 1216, 1446, 1471, 1494, 1531, 1542
BsmBI	CGTCTC	1 cut(s)	1446
BsmFI	GGGAC	4 cut(s)	73, 351, 1541, 1981
BsmI	GAATGC	1 cut(s)	1690
BsnI	GGCC	8 cut(s)	36, 252, 263, 697, 997, 1059, 1435, 1623
Bso31I	GGTCTC	1 cut(s)	1471
BsoBI	CYCGRG	1 cut(s)	140
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	7 cut(s)	38, 174, 391, 1355, 1539, 2104, 2185
Bsp13I	TCCGGA	2 cut(s)	489, 571
Bsp1407I	TGTACA	1 cut(s)	2194
BspACI	CCGC	5 cut(s)	99, 311, 363, 1007, 1249
BspANI	GGCC	8 cut(s)	36, 252, 263, 697, 997, 1059, 1435, 1623
BspCNI	CTCAG	7 cut(s)	171, 754, 890, 1481, 1885, 2070, 2197
BspEI	TCCGGA	2 cut(s)	489, 571
BspLI	GGNNCC	6 cut(s)	36, 46, 147, 173, 367, 772
BspMAI	CTGCAG	3 cut(s)	72, 1791, 1909
BspPI	GGATC	5 cut(s)	507, 758, 1181, 1747, 1825
BspQI	GCTCTTC	1 cut(s)	1425
BspT107I	GGYRCC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	1471
BsrDI	GCAATG	3 cut(s)	306, 444, 862
BsrGI	TGTACA	1 cut(s)	2194
BsrI	ACTGG	8 cut(s)	774, 900, 1236, 1577, 1618, 1879, 2049, 2127
BssECI	CCNNGG	4 cut(s)	141, 1157, 1430, 2001
BssNAI	GTATAC	1 cut(s)	983
BssT1I	CCWWGG	2 cut(s)	1157, 1430
Bst1107I	GTATAC	1 cut(s)	983
Bst2UI	CCWGG	5 cut(s)	227, 768, 1345, 2002, 2160
Bst4CI	ACNGT	5 cut(s)	49, 121, 233, 725, 818
Bst6I	CTCTTC	4 cut(s)	1214, 1425, 1500, 2126
BstAUI	TGTACA	1 cut(s)	2194
BstC8I	GCNNGC	2 cut(s)	287, 306
BstDEI	CTNAG	8 cut(s)	158, 741, 877, 1361, 1468, 1893, 2057, 2184
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	6 cut(s)	108, 498, 553, 558, 568, 761
BstHHI	GCGC	1 cut(s)	59
BstMAI	GTCTC	8 cut(s)	731, 804, 1216, 1446, 1471, 1494, 1531, 1542
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	305, 310, 1040
BstNI	CCWGG	5 cut(s)	227, 768, 1345, 2002, 2160
BstNSI	RCATGY	2 cut(s)	536, 2246
BstSCI	CCNGG	5 cut(s)	225, 766, 1343, 2000, 2158
BstSFI	CTRYAG	7 cut(s)	68, 273, 783, 814, 1787, 1905, 2007
BstSLI	GKGCMC	2 cut(s)	38, 174
BstV1I	GCAGC	3 cut(s)	46, 82, 1159
BstV2I	GAAGAC	1 cut(s)	2046
BstX2I	RGATCY	4 cut(s)	499, 763, 1817, 1918
BstYI	RGATCY	4 cut(s)	499, 763, 1817, 1918
BstZ17I	GTATAC	1 cut(s)	983
BsuRI	GGCC	8 cut(s)	36, 252, 263, 697, 997, 1059, 1435, 1623
BtgZI	GCGATG	1 cut(s)	717
BtsCI	GGATG	6 cut(s)	108, 498, 553, 558, 568, 761
BtsIMutI	CAGTG	6 cut(s)	1243, 1584, 1832, 1872, 2056, 2120
Cac8I	GCNNGC	2 cut(s)	287, 306
CaiI	CAGNNNCTG	2 cut(s)	866, 1037
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	8 cut(s)	34, 35, 365, 770, 995, 1009, 1057, 1877
CseI	GACGC	1 cut(s)	1637
CsiI	ACCWGGT	1 cut(s)	1343
Csp6I	GTAC	5 cut(s)	582, 1177, 1859, 1947, 2195
CspCI	CAANNNNNGTGG	2 cut(s)	1443, 1478
CviAII	CATG	5 cut(s)	133, 533, 929, 1655, 2243
CviQI	GTAC	5 cut(s)	582, 1177, 1859, 1947, 2195
DdeI	CTNAG	8 cut(s)	158, 741, 877, 1361, 1468, 1893, 2057, 2184
EaeI	YGGCCR	1 cut(s)	1621
Eam1104I	CTCTTC	4 cut(s)	1214, 1425, 1500, 2126
EarI	CTCTTC	4 cut(s)	1214, 1425, 1500, 2126
Ecl136II	GAGCTC	1 cut(s)	2183
Eco130I	CCWWGG	2 cut(s)	1157, 1430
Eco147I	AGGCCT	2 cut(s)	263, 697
Eco24I	GRGCYC	3 cut(s)	38, 391, 2185
Eco31I	GGTCTC	1 cut(s)	1471
Eco32I	GATATC	1 cut(s)	487
Eco47I	GGWCC	4 cut(s)	365, 770, 1009, 1877
Eco53kI	GAGCTC	1 cut(s)	2183
Eco57I	CTGAAG	3 cut(s)	299, 1313, 1731
Eco88I	CYCGRG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	2183
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	5 cut(s)	225, 766, 1343, 2000, 2158
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	1157, 1430
EcoT38I	GRGCYC	3 cut(s)	38, 391, 2185
ErhI	CCWWGG	2 cut(s)	1157, 1430
Esp3I	CGTCTC	1 cut(s)	1446
FaeI	CATG	5 cut(s)	136, 536, 932, 1658, 2246
FalI	AAGNNNNNCTT	8 cut(s)	297, 329, 942, 974, 1163, 1195, 1311, 1343
FaqI	GGGAC	4 cut(s)	73, 351, 1541, 1981
FatI	CATG	5 cut(s)	132, 532, 928, 1654, 2242
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	2 cut(s)	982, 1588
Fnu4HI	GCNGC	4 cut(s)	60, 71, 99, 1148
FokI	GGATG	6 cut(s)	95, 505, 545, 555, 560, 768
FriOI	GRGCYC	3 cut(s)	38, 391, 2185
Fsp4HI	GCNGC	4 cut(s)	60, 71, 99, 1148
FspBI	CTAG	6 cut(s)	182, 404, 672, 699, 1431, 1532
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	4 cut(s)	60, 71, 99, 1148
GsuI	CTGGAG	2 cut(s)	987, 2019
HaeIII	GGCC	8 cut(s)	36, 252, 263, 697, 997, 1059, 1435, 1623
HapII	CCGG	4 cut(s)	490, 572, 593, 1773
HgaI	GACGC	1 cut(s)	1637
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	136, 536, 932, 1658, 2246
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	9 cut(s)	78, 409, 739, 802, 1550, 1568, 1673, 1895, 1982
HpaI	GTTAAC	1 cut(s)	429
HpaII	CCGG	4 cut(s)	490, 572, 593, 1773
HphI	GGTGA	2 cut(s)	215, 1719
Hpy166II	GTNNAC	9 cut(s)	429, 530, 553, 637, 983, 1589, 1861, 1949, 2240
Hpy8I	GTNNAC	9 cut(s)	429, 530, 553, 637, 983, 1589, 1861, 1949, 2240
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	5 cut(s)	49, 121, 233, 725, 818
HpyCH4IV	ACGT	4 cut(s)	237, 425, 1302, 1439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	305, 310, 1040
HpyF3I	CTNAG	8 cut(s)	158, 741, 877, 1361, 1468, 1893, 2057, 2184
HpySE526I	ACGT	4 cut(s)	237, 425, 1302, 1439
Hsp92II	CATG	5 cut(s)	136, 536, 932, 1658, 2246
HspAI	GCGC	1 cut(s)	57
Kpn2I	TCCGGA	2 cut(s)	489, 571
Ksp22I	TGATCA	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	429
LguI	GCTCTTC	1 cut(s)	1425
LmnI	GCTCC	1 cut(s)	2180
Lsp1109I	GCAGC	3 cut(s)	46, 82, 1159
LweI	GCATC	4 cut(s)	138, 340, 517, 1222
MabI	ACCWGGT	1 cut(s)	1343
MaeI	CTAG	6 cut(s)	182, 404, 672, 699, 1431, 1532
MaeII	ACGT	4 cut(s)	237, 425, 1302, 1439
MaeIII	GTNAC	5 cut(s)	233, 535, 916, 1364, 2162
MfeI	CAATTG	2 cut(s)	1518, 2201
MflI	RGATCY	4 cut(s)	499, 763, 1817, 1918
MhlI	GDGCHC	7 cut(s)	38, 174, 391, 1355, 1539, 2104, 2185
MlsI	TGGCCA	1 cut(s)	1623
MluNI	TGGCCA	1 cut(s)	1623
MlyI	GAGTC	5 cut(s)	72, 733, 811, 1544, 1904
MmeI	TCCRAC	2 cut(s)	701, 1525
Mox20I	TGGCCA	1 cut(s)	1623
MroI	TCCGGA	2 cut(s)	489, 571
MroXI	GAANNNNTTC	4 cut(s)	438, 831, 885, 1419
MscI	TGGCCA	1 cut(s)	1623
MseI	TTAA	6 cut(s)	428, 795, 1071, 1227, 1307, 1340
MslI	CAYNNNNRTG	1 cut(s)	909
Msp20I	TGGCCA	1 cut(s)	1623
MspA1I	CMGCKG	3 cut(s)	1007, 1814, 1955
MspI	CCGG	4 cut(s)	490, 572, 593, 1773
MspR9I	CCNGG	5 cut(s)	227, 768, 1345, 2002, 2160
MunI	CAATTG	2 cut(s)	1518, 2201
Mva1269I	GAATGC	1 cut(s)	1690
MvaI	CCWGG	5 cut(s)	227, 768, 1345, 2002, 2160
MwoI	GCNNNNNNNGC	3 cut(s)	305, 310, 1040
NlaIII	CATG	5 cut(s)	136, 536, 932, 1658, 2246
NlaIV	GGNNCC	6 cut(s)	36, 46, 147, 173, 367, 772
NmuCI	GTSAC	1 cut(s)	2162
NspI	RCATGY	2 cut(s)	536, 2246
PceI	AGGCCT	2 cut(s)	263, 697
PciI	ACATGT	2 cut(s)	532, 2242
PciSI	GCTCTTC	1 cut(s)	1425
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	1690
PdmI	GAANNNNTTC	4 cut(s)	438, 831, 885, 1419
PfeI	GAWTC	4 cut(s)	409, 1568, 1673, 1982
PflFI	GACNNNGTC	2 cut(s)	774, 1553
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	4 cut(s)	61, 72, 100, 1149
Ple19I	CGATCG	1 cut(s)	127
PleI	GAGTC	5 cut(s)	72, 733, 810, 1544, 1903
PpsI	GAGTC	5 cut(s)	72, 733, 810, 1544, 1903
PscI	ACATGT	2 cut(s)	532, 2242
PshBI	ATTAAT	1 cut(s)	1071
Psp124BI	GAGCTC	1 cut(s)	2185
Psp1406I	AACGTT	2 cut(s)	237, 1302
Psp6I	CCWGG	5 cut(s)	225, 766, 1343, 2000, 2158
PspGI	CCWGG	5 cut(s)	225, 766, 1343, 2000, 2158
PspN4I	GGNNCC	6 cut(s)	36, 46, 147, 173, 367, 772
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	8 cut(s)	34, 35, 365, 770, 995, 1009, 1057, 1877
PstI	CTGCAG	3 cut(s)	72, 1791, 1909
PstNI	CAGNNNCTG	2 cut(s)	866, 1037
PsuI	RGATCY	4 cut(s)	499, 763, 1817, 1918
PsyI	GACNNNGTC	2 cut(s)	774, 1553
PvuI	CGATCG	1 cut(s)	127
PvuII	CAGCTG	2 cut(s)	1814, 1955
RsaI	GTAC	5 cut(s)	583, 1178, 1860, 1948, 2196
RsaNI	GTAC	5 cut(s)	582, 1177, 1859, 1947, 2195
RseI	CAYNNNNRTG	1 cut(s)	909
SacI	GAGCTC	1 cut(s)	2185
SapI	GCTCTTC	1 cut(s)	1425
SaqAI	TTAA	6 cut(s)	428, 795, 1071, 1227, 1307, 1340
SatI	GCNGC	4 cut(s)	60, 71, 99, 1148
Sau96I	GGNCC	8 cut(s)	34, 35, 365, 770, 995, 1009, 1057, 1877
ScaI	AGTACT	1 cut(s)	1178
SchI	GAGTC	5 cut(s)	72, 733, 811, 1544, 1904
ScrFI	CCNGG	5 cut(s)	227, 768, 1345, 2002, 2160
SduI	GDGCHC	7 cut(s)	38, 174, 391, 1355, 1539, 2104, 2185
SexAI	ACCWGGT	1 cut(s)	1343
SfaNI	GCATC	4 cut(s)	138, 340, 517, 1222
SfcI	CTRYAG	7 cut(s)	68, 273, 783, 814, 1787, 1905, 2007
SinI	GGWCC	4 cut(s)	365, 770, 1009, 1877
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	4 cut(s)	80, 280, 651, 1962
SmoI	CTYRAG	4 cut(s)	80, 280, 651, 1962
SseBI	AGGCCT	2 cut(s)	263, 697
SsiI	CCGC	5 cut(s)	99, 311, 363, 1007, 1249
SspI	AATATT	1 cut(s)	2018
SspMI	CTAG	6 cut(s)	182, 404, 672, 699, 1431, 1532
SstI	GAGCTC	1 cut(s)	2185
StuI	AGGCCT	2 cut(s)	263, 697
StyD4I	CCNGG	5 cut(s)	225, 766, 1343, 2000, 2158
StyI	CCWWGG	2 cut(s)	1157, 1430
TaaI	ACNGT	5 cut(s)	49, 121, 233, 725, 818
TaiI	ACGT	4 cut(s)	240, 428, 1305, 1442
TaqI	TCGA	4 cut(s)	123, 213, 1650, 2104
TaqII	GACCGA	1 cut(s)	1981
TatI	WGTACW	2 cut(s)	1176, 2194
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	4 cut(s)	409, 1568, 1673, 1982
Tru1I	TTAA	6 cut(s)	428, 795, 1071, 1227, 1307, 1340
Tru9I	TTAA	6 cut(s)	428, 795, 1071, 1227, 1307, 1340
TscAI	CASTG	6 cut(s)	1243, 1584, 1839, 1879, 2056, 2127
TseFI	GTSAC	1 cut(s)	2162
TseI	GCWGC	3 cut(s)	59, 70, 1147
Tsp45I	GTSAC	1 cut(s)	2162
TspDTI	ATGAA	7 cut(s)	624, 1326, 1581, 1742, 1746, 1974, 2166
TspGWI	ACGGA	2 cut(s)	706, 1257
TspRI	CASTG	6 cut(s)	1243, 1584, 1839, 1879, 2056, 2127
Tth111I	GACNNNGTC	2 cut(s)	774, 1553
VpaK11BI	GGWCC	4 cut(s)	365, 770, 1009, 1877
VspI	ATTAAT	1 cut(s)	1071
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	5 cut(s)	657, 789, 1823, 2070, 2212
XceI	RCATGY	2 cut(s)	536, 2246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1459
XmaJI	CCTAGG	1 cut(s)	1430
XmiI	GTMKAC	2 cut(s)	982, 1588
XmnI	GAANNNNTTC	4 cut(s)	438, 831, 885, 1419
XspI	CTAG	6 cut(s)	182, 404, 672, 699, 1431, 1532
ZrmI	AGTACT	1 cut(s)	1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.