Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000003.1

Orthogroup ID

OG0009781

Physical Location & Seq

Genomic Coordinates Forward (+)

33 .. 1373

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000003.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgccagagttgcgaagcggagtgcgcagatcaaaacggcttgatgatcttcagccttcctcacagcagcaacccattgctcaacctgagaattgtctgctgccagtgcctgcccacaataataaacctcgaaggagagctgctgccggacgcggtagagctgctaatgctgtagccaaagcaccttcaccagcaataccctcaaggcccaccccacctgctcgaggccgcggcgccgttaggttgattgatttagaccctgaaccttgccctcttcttcctccacctgccgatcccatttataaccgtgttcaagttgtagccgataaagatattgcaatggagggtggcggcagcgcagacaaagctttggcagttgaagaagacgcaggcgcaactcccgttcctgatagggtacaagtgggtaactctccccaatacaaggtagaaaggaagttaggtaagggtggctttggccaagtgtatgttggcagaagggttagtggtggaactgacaggacaggaccagatgcaatagaggtcgctttaaagttcgaacacagaaatagtaaaggttgcaattatggccctccttatgagtggcaagtctacaatactctaaatggatgttatggagttccatgggttcattacaagggtcgccaaggggatttttacattctggtaatggacattcttggtcccagtctatgggatgtatggaattctcttggtcagacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032501 GO:0032922 GO:0036211 GO:0042176 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

247

Amino Acids

26.79

Weight (kDa)

9.3

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03940 AT5G18190 AT5G18190
fragaria_vesca	FvH4_1g28110 FvH4_1g28110 FvH4_1g28110 FvH4_1g28110
malus_domestica	MD12G1003400.v1.1
prunus_persica	Prupe.7G003800_v2.0.a1
pyrus_communis	pycom12g00290
rosa_chinensis	RchiOBHm_Chr3g0497131
rosa_laevigata	RLG00000022480
rosa_multiflora	Rmu_ssc0000003.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388390
rosa_rugosa	Rorug03G0290200 Rorug03G0290300
rosa_samantha	Rh3AG334300 Rh3BG371400 Rh3CG368300 Rh3DG369300
rosa_wichuraiana	Rw3G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AarI	CACCTGC	2 cut(s)	226, 295
Acc16I	TGCGCA	1 cut(s)	26
Acc36I	ACCTGC	2 cut(s)	226, 295
AccB1I	GGYRCC	1 cut(s)	233
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccI	GTMKAC	1 cut(s)	609
AccII	CGCG	2 cut(s)	153, 231
AciI	CCGC	5 cut(s)	18, 153, 229, 231, 351
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	724
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	3 cut(s)	224, 442, 711
AgsI	TTSAA	2 cut(s)	314, 380
AluBI	AGCT	3 cut(s)	140, 161, 368
AluI	AGCT	3 cut(s)	140, 161, 368
AlwI	GGATC	1 cut(s)	287
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	4 cut(s)	206, 226, 475, 586
ApeKI	GCWGC	6 cut(s)	67, 100, 140, 143, 161, 354
ApoI	RAATTY	1 cut(s)	724
AspLEI	GCGC	4 cut(s)	27, 236, 359, 395
AspS9I	GGNCC	4 cut(s)	207, 524, 587, 701
AsuHPI	GGTGA	1 cut(s)	180
AsuII	TTCGAA	1 cut(s)	555
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	2 cut(s)	524, 701
BalI	TGGCCA	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	6 cut(s)	79, 87, 127, 130, 148, 366
BceAI	ACGGC	2 cut(s)	53, 221
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	2 cut(s)	226, 295
BisI	GCNGC	9 cut(s)	68, 101, 141, 144, 162, 229, 232, 352, 355
BlsI	GCNGC	9 cut(s)	69, 102, 142, 145, 163, 230, 233, 353, 356
Bme18I	GGWCC	2 cut(s)	524, 701
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	4 cut(s)	207, 524, 587, 701
BmiI	GGNNCC	2 cut(s)	235, 703
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	1 cut(s)	520
BmuI	ACTGGG	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	229, 641, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 442, 711
Bse1I	ACTGG	2 cut(s)	104, 705
Bse3DI	GCAATG	2 cut(s)	75, 345
BseDI	CCNNGG	3 cut(s)	229, 641, 664
BseGI	GGATG	2 cut(s)	632, 721
BseLI	CCNNNNNNNGG	3 cut(s)	224, 442, 711
BseMI	GCAATG	2 cut(s)	75, 345
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	104, 705
BseXI	GCAGC	6 cut(s)	79, 87, 127, 130, 148, 366
Bsh1236I	CGCG	2 cut(s)	153, 231
BshFI	GGCC	4 cut(s)	208, 228, 477, 588
BshNI	GGYRCC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	3 cut(s)	224, 442, 711
BsmFI	GGGAC	1 cut(s)	687
BsnI	GGCC	4 cut(s)	208, 228, 477, 588
BsoBI	CYCGRG	1 cut(s)	222
Bsp119I	TTCGAA	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	29, 46, 292
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	5 cut(s)	18, 153, 229, 231, 351
BspANI	GGCC	4 cut(s)	208, 228, 477, 588
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	2 cut(s)	153, 231
BspLI	GGNNCC	2 cut(s)	235, 703
BspMI	ACCTGC	2 cut(s)	226, 295
BspPI	GGATC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	555
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	75, 345
BsrI	ACTGG	2 cut(s)	104, 705
BssECI	CCNNGG	3 cut(s)	229, 641, 664
BssMI	GATC	3 cut(s)	29, 46, 292
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	641, 664
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	111, 391
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	2 cut(s)	229, 641
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	632, 721
BstFNI	CGCG	2 cut(s)	153, 231
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	4 cut(s)	27, 236, 359, 395
BstKTI	GATC	3 cut(s)	32, 49, 295
BstMBI	GATC	3 cut(s)	29, 46, 292
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 24, 106, 167, 365, 585
BstSFI	CTRYAG	1 cut(s)	171
BstUI	CGCG	2 cut(s)	153, 231
BstV1I	GCAGC	6 cut(s)	79, 87, 127, 130, 148, 366
BstV2I	GAAGAC	1 cut(s)	390
BsuRI	GGCC	4 cut(s)	208, 228, 477, 588
BtgI	CCRYGG	2 cut(s)	229, 641
BtsCI	GGATG	2 cut(s)	632, 721
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	2 cut(s)	226, 295
Cac8I	GCNNGC	2 cut(s)	111, 391
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	4 cut(s)	27, 236, 359, 395
Cfr13I	GGNCC	4 cut(s)	207, 524, 587, 701
Cfr42I	CCGCGG	1 cut(s)	232
CseI	GACGC	2 cut(s)	159, 395
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	1 cut(s)	642
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	87
DinI	GGCGCC	1 cut(s)	235
DpnI	GATC	3 cut(s)	31, 48, 294
DpnII	GATC	3 cut(s)	29, 46, 292
DraI	TTTAAA	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	641, 664
Eco47I	GGWCC	2 cut(s)	524, 701
Eco57I	CTGAAG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	641, 664
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
ErhI	CCWWGG	2 cut(s)	641, 664
FaeI	CATG	1 cut(s)	645
FaiI	YATR	8 cut(s)	303, 486, 585, 597, 633, 643, 712, 721
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	1 cut(s)	641
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	9 cut(s)	68, 101, 141, 144, 162, 229, 232, 352, 355
FokI	GGATG	2 cut(s)	639, 728
Fsp4HI	GCNGC	9 cut(s)	68, 101, 141, 144, 162, 229, 232, 352, 355
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	4 cut(s)	26, 235, 358, 394
GluI	GCNGC	9 cut(s)	68, 101, 141, 144, 162, 229, 232, 352, 355
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	208, 228, 477, 588
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	2 cut(s)	159, 395
HhaI	GCGC	4 cut(s)	27, 236, 359, 395
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	645
Hin6I	GCGC	4 cut(s)	25, 234, 357, 393
HinP1I	GCGC	4 cut(s)	25, 234, 357, 393
HindIII	AAGCTT	1 cut(s)	366
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	1 cut(s)	738
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	4 cut(s)	66, 126, 195, 489
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	740
HpyCH4V	TGCA	3 cut(s)	338, 533, 579
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 24, 106, 167, 365, 585
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	740
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	645
HspAI	GCGC	4 cut(s)	25, 234, 357, 393
KasI	GGCGCC	1 cut(s)	233
KspI	CCGCGG	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	29, 46, 292
Lsp1109I	GCAGC	6 cut(s)	79, 87, 127, 130, 148, 366
LweI	GCATC	1 cut(s)	520
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	3 cut(s)	31, 48, 294
MboI	GATC	3 cut(s)	29, 46, 292
MboII	GAAGA	5 cut(s)	41, 266, 269, 392, 395
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	3 cut(s)	91, 580, 724
MluNI	TGGCCA	1 cut(s)	477
Mly113I	GGCGCC	1 cut(s)	234
MnlI	CCTC	9 cut(s)	70, 138, 211, 218, 282, 291, 337, 532, 600
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	1 cut(s)	147
MvnI	CGCG	2 cut(s)	153, 231
MwoI	GCNNNNNNNGC	6 cut(s)	10, 24, 106, 167, 365, 585
NarI	GGCGCC	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	3 cut(s)	29, 46, 292
NlaIII	CATG	1 cut(s)	645
NlaIV	GGNNCC	2 cut(s)	235, 703
NsbI	TGCGCA	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	222
PaqCI	CACCTGC	2 cut(s)	226, 295
PflMI	CCANNNNNTGG	1 cut(s)	711
PkrI	GCNGC	9 cut(s)	69, 102, 142, 145, 163, 230, 233, 353, 356
PluTI	GGCGCC	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	235, 703
PspPI	GGNCC	4 cut(s)	207, 524, 587, 701
PspXI	VCTCGAGB	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SacII	CCGCGG	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	9 cut(s)	68, 101, 141, 144, 162, 229, 232, 352, 355
Sau3AI	GATC	3 cut(s)	29, 46, 292
Sau96I	GGNCC	4 cut(s)	207, 524, 587, 701
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	171
SfoI	GGCGCC	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	222
Sfr303I	CCGCGG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	555
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	2 cut(s)	524, 701
SlaI	CTCGAG	1 cut(s)	222
SmlI	CTYRAG	2 cut(s)	202, 222
SmoI	CTYRAG	2 cut(s)	202, 222
Sse9I	AATT	3 cut(s)	91, 580, 724
SsiI	CCGC	5 cut(s)	18, 153, 229, 231, 351
SspDI	GGCGCC	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	641, 664
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	743
TaqI	TCGA	3 cut(s)	130, 223, 555
TasI	AATT	3 cut(s)	91, 580, 724
TauI	GCSGC	3 cut(s)	231, 234, 354
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	6 cut(s)	67, 100, 140, 143, 161, 354
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	711
VpaK11BI	GGWCC	2 cut(s)	524, 701
XagI	CCTNNNNNAGG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XhoI	CTCGAG	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.