Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009781

Physical Location & Seq

Genomic Coordinates Reverse (-)

46696552 .. 46703509

Gene Structure 6958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG368300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGCCAGAGTTGCGAAGCGGAGTGCGCAGATCAAAACGGCTTGATGATCTTCAGCCTTCCTCACAGCAGCAACCCATTGCTCAACCTGAGAATTGTCTGCTGCCAGTGCCTGCCCACAATAATAAACCTCGAAGGAGAGCTGCTGCCGGACGCGGTAGAGCTGCTAATGCTGTAGCCAAAGCACCTTCACCAGCAATACCCTCAAGGCCCACCCCACCTGCTCGAGGCCGCGGCGCCGTTAGGTTGATTGATTTAGACCCTGAACCTTGCCCTCTTCTTCCTCCACCTGCCGATCCCATTTATAACCGTGTTCAAGTTGTAGCCGATAAAGATATTGCAATGGAGGGTGGCGGCAGCGCAGACAAAGCTTTGGCAGTTGAAGAAGACGCAGGCGCAACTCCCGTTCCTGATAGGGTACAAGTGGGTAACTCTCCCCAATACAAGGTAGAAAGGAAGTTAGGTAAGGGTGGCTTTGGCCAAGTGTATGTTGGCAGAAGGGTTAGTGGTGGAACTGACAGGACAGGACCAGATGCAATAGAGGTCGCTTTAAAGTTCGAACACAGAAATAGTAAAGGTTGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAATACTCTAAATGGATGTTATGGAGTTCCATGGGTTCATTACAAGGGTCGCCAAGGGGATTTTTACATTCTGGTAATGGACATTCTTGGTCCCAGTCTATGGGATGTATGGAATTCTCTTGGTCAGACGATGTCTCCGAATATGGTGGCGTGCATCGCAGTGGAGGCAATATCAATTCTAGAAAAGCTTCACTCAAAAGGGTTTGTGCATGGAGATGTAAAACCTGAGAATTTCTTACTTGGTCAACCTGGAACAGCTGATGAGAAGAAGTTATATCTTATTGATCTTGGTTTGGCATCGAGATGGAAGGAATCATCATCAAGTCAACATGTTGAATATGATCAGAGGCCTGACATATTCAGGGGGACAATAAGATATGCAAGTGTTCATGCACATTTAGGTCGGACTGGAAGTCGAAGGGACGATCTTGAGTCGTTGGCATACACATTAATATTTCTCATAAAAGGAAGGTTACCCTGGCAGGGGTATCAGGGTGATAACAAGAGTTTCCTTGTATGTAAGAAGAAGATGTCCACATCCCCAGAGTTGATGTGCTGTTTCTGCCCTCCCCCATTTAAACAGTTTCTTGAAGCTGTTACAATTATGAAGTTTGATGAAGAGCCAAACTATGCAAAGTTGATATCCTTTTTTGAAAGCTTGATCGAACCATGTGTTCCGCTAAGACCAATTAGAATTGATGGAGCTCTGAAGGTTGGGCAGAAACGGGGAAGAATTGCACTAAATTTCGAAGATGATGAACAACCGAAGAAGAAAGTCCGATTAGGTAGTCCGGCTACCCAGTGGATTTCAGTGTATAATGCACGCCGTCCCATGAAGCAAAGATATCACTATAATGTGGCAGACTCAAGGCTGCGCCAACATGTTGACAAGGGTAATGAAGATGGACTGTATATTAGCTCTGTAGCCTCTGCAGCAAATCTGTGGGCTCTAATCATGGATGCAGGGACAGGTTTCTCTTCCCAGGTTTATGAGTTGTCAGCTGTCTTCCTGCATAAGGATTGGATCATGGAGCAGTGGGAAAAAAATTTCTATATTAGTTCAATAGCGGGTGTGAATAATGGGAGTTCCTTGGTTGTTATGTCCAAAGGGACTCCCTACACCCAGCAGTCATACAAAGTGAGTGAATCTTTTCCTTTCAAGTGGATAAATAAGAAGTGGAAAGAAGGTTTCCATGTAACGTCTATGACAACTGCTGGTAACCGCTGGGGTGTGGTTATGTCCAGAAATGCTGGATTTTCTGATCAGGTTGTGGAGCTTGATTTTTTATACCCAAGTGAAGGTATACACAGACGATGGGAGAGTGGTTATAGGATAACATCTATGGCTGCGACTTCTGATCAAGCAGCCTTCATTTTGAGTATACCAAAACGTAAATTGATGGATGAAACTCAAGAGACTCTGCGTACCTCTGCCTTCCCAAGCAGCCATGTAAAGGAAAAATGGTCCAAAAATTTATATATTGCCTCAATTTGTTTTGGACGGACTGTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032501 GO:0032922 GO:0036211 GO:0042176 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

708

Amino Acids

79.15

Weight (kDa)

9.23

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	147 - 379	7.7e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	148 - 314	2.3e-06	Protein tyrosine and serine/threonine kinase
Pkinase_fungal	PF17667	258 - 357	4.9e-09	Fungal protein kinase
DUF7477	PF24289	441 - 707	2.2e-160	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03940 AT5G18190 AT5G18190
fragaria_vesca	FvH4_1g28110 FvH4_1g28110 FvH4_1g28110 FvH4_1g28110
malus_domestica	MD12G1003400.v1.1
prunus_persica	Prupe.7G003800_v2.0.a1
pyrus_communis	pycom12g00290
rosa_chinensis	RchiOBHm_Chr3g0497131
rosa_laevigata	RLG00000022480
rosa_multiflora	Rmu_ssc0000003.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388390
rosa_rugosa	Rorug03G0290200 Rorug03G0290300
rosa_samantha	Rh3AG334300 Rh3BG371400 Rh3CG368300 Rh3DG369300
rosa_wichuraiana	Rw3G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AarI	CACCTGC	2 cut(s)	226, 295
Acc16I	TGCGCA	1 cut(s)	26
Acc36I	ACCTGC	2 cut(s)	226, 295
AccB1I	GGYRCC	1 cut(s)	233
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccI	GTMKAC	3 cut(s)	609, 1915, 1993
AccII	CGCG	2 cut(s)	153, 231
AciI	CCGC	8 cut(s)	18, 153, 229, 231, 351, 1289, 1679, 1834
AclWI	GGATC	2 cut(s)	287, 1643
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	5 cut(s)	724, 841, 1354, 1657, 2083
AcuI	CTGAAG	2 cut(s)	35, 1340
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	417, 2038
AfiI	CCNNNNNNNGG	8 cut(s)	224, 442, 711, 1094, 1095, 1627, 1910, 2065
AflIII	ACRYGT	2 cut(s)	940, 1492
AgsI	TTSAA	7 cut(s)	314, 380, 947, 1202, 1265, 1674, 1771
AhdI	GACNNNNNGTC	1 cut(s)	1023
AjnI	CCWGG	3 cut(s)	859, 1088, 1593
Alw21I	GWGCWC	1 cut(s)	1318
Alw26I	GTCTC	2 cut(s)	750, 2021
AlwI	GGATC	2 cut(s)	287, 1643
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	5 cut(s)	206, 226, 475, 586, 959
ApoI	RAATTY	5 cut(s)	724, 841, 1354, 1657, 2083
ArsI	GACNNNNNNTTYG	1 cut(s)	2103
AseI	ATTAAT	1 cut(s)	1061
Asp700I	GAANNNNTTC	2 cut(s)	798, 1761
AspLEI	GCGC	5 cut(s)	27, 236, 359, 395, 1488
AspS9I	GGNCC	5 cut(s)	207, 524, 587, 701, 2076
AsuHPI	GGTGA	2 cut(s)	180, 1118
AsuII	TTCGAA	2 cut(s)	555, 1359
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	3 cut(s)	524, 701, 2076
BalI	TGGCCA	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	2 cut(s)	1318, 1561
BbsI	GAAGAC	2 cut(s)	390, 1609
Bbv12I	GWGCWC	1 cut(s)	1318
BccI	CCATC	5 cut(s)	909, 1304, 1508, 1920, 2005
BceAI	ACGGC	3 cut(s)	53, 221, 1422
BciT130I	CCWGG	3 cut(s)	861, 1090, 1595
BclI	TGATCA	3 cut(s)	952, 1873, 1969
BcoDI	GTCTC	2 cut(s)	750, 2021
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	3 cut(s)	171, 1533, 1542
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	2 cut(s)	226, 295
Bme1390I	CCNGG	3 cut(s)	861, 1090, 1595
Bme18I	GGWCC	3 cut(s)	524, 701, 2076
BmeRI	GACNNNNNGTC	1 cut(s)	1023
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	5 cut(s)	207, 524, 587, 701, 2076
BmiI	GGNNCC	2 cut(s)	235, 703
BmrFI	CCNGG	3 cut(s)	861, 1090, 1595
BmrI	ACTGGG	2 cut(s)	699, 1405
BmsI	GCATC	4 cut(s)	520, 774, 917, 1561
BmuI	ACTGGG	2 cut(s)	699, 1405
BpiI	GAAGAC	2 cut(s)	390, 1609
Bpu14I	TTCGAA	2 cut(s)	555, 1359
BpuEI	CTTGAG	4 cut(s)	187, 1061, 1462, 2007
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	6 cut(s)	229, 641, 664, 1088, 1593, 1701
BsaXI	ACNNNNNCTCC	2 cut(s)	730, 760
Bsc4I	CCNNNNNNNGG	8 cut(s)	224, 442, 711, 1094, 1095, 1627, 1910, 2065
Bse1I	ACTGG	4 cut(s)	104, 705, 1024, 1411
Bse3DI	GCAATG	2 cut(s)	75, 345
BseBI	CCWGG	3 cut(s)	861, 1090, 1595
BseDI	CCNNGG	6 cut(s)	229, 641, 664, 1088, 1593, 1701
BseGI	GGATG	5 cut(s)	632, 721, 1148, 1576, 2020
BseLI	CCNNNNNNNGG	8 cut(s)	224, 442, 711, 1094, 1095, 1627, 1910, 2065
BseMI	GCAATG	2 cut(s)	75, 345
BseMII	CTCAG	2 cut(s)	78, 828
BseNI	ACTGG	4 cut(s)	104, 705, 1024, 1411
BseYI	CCCAGC	2 cut(s)	1734, 1836
Bsh1236I	CGCG	2 cut(s)	153, 231
BshFI	GGCC	5 cut(s)	208, 228, 477, 588, 961
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	1318
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	147, 1403
BslFI	GGGAC	6 cut(s)	687, 991, 1046, 1425, 1591, 1735
BslI	CCNNNNNNNGG	8 cut(s)	224, 442, 711, 1094, 1095, 1627, 1910, 2065
BsmAI	GTCTC	2 cut(s)	750, 2021
BsmFI	GGGAC	6 cut(s)	687, 991, 1046, 1425, 1591, 1735
BsnI	GGCC	5 cut(s)	208, 228, 477, 588, 961
BsoBI	CYCGRG	1 cut(s)	222
Bsp119I	TTCGAA	2 cut(s)	555, 1359
Bsp1286I	GDGCHC	2 cut(s)	1318, 1561
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	8 cut(s)	18, 153, 229, 231, 351, 1289, 1679, 1834
BspANI	GGCC	5 cut(s)	208, 228, 477, 588, 961
BspCNI	CTCAG	2 cut(s)	79, 829
BspFNI	CGCG	2 cut(s)	153, 231
BspLI	GGNNCC	2 cut(s)	235, 703
BspMAI	CTGCAG	1 cut(s)	1546
BspMI	ACCTGC	2 cut(s)	226, 295
BspPI	GGATC	2 cut(s)	287, 1643
BspQI	GCTCTTC	1 cut(s)	1224
BspT104I	TTCGAA	2 cut(s)	555, 1359
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	75, 345
BsrI	ACTGG	4 cut(s)	104, 705, 1024, 1411
BssECI	CCNNGG	6 cut(s)	229, 641, 664, 1088, 1593, 1701
BssNAI	GTATAC	2 cut(s)	1916, 1994
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	3 cut(s)	641, 664, 1701
Bst1107I	GTATAC	2 cut(s)	1916, 1994
Bst2UI	CCWGG	3 cut(s)	861, 1090, 1595
Bst4CI	ACNGT	4 cut(s)	308, 1194, 1521, 2119
Bst6I	CTCTTC	3 cut(s)	279, 1224, 1594
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	2 cut(s)	555, 1359
BstC8I	GCNNGC	4 cut(s)	111, 391, 763, 1435
BstDEI	CTNAG	3 cut(s)	87, 837, 1292
BstDSI	CCRYGG	2 cut(s)	229, 641
BstEII	GGTNACC	2 cut(s)	1083, 1829
BstENI	CCTNNNNNAGG	2 cut(s)	222, 1625
BstF5I	GGATG	5 cut(s)	632, 721, 1148, 1576, 2020
BstFNI	CGCG	2 cut(s)	153, 231
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	5 cut(s)	27, 236, 359, 395, 1488
BstMAI	GTCTC	2 cut(s)	750, 2021
BstNI	CCWGG	3 cut(s)	861, 1090, 1595
BstNSI	RCATGY	2 cut(s)	944, 1496
BstPI	GGTNACC	2 cut(s)	1083, 1829
BstSCI	CCNGG	3 cut(s)	859, 1088, 1593
BstSFI	CTRYAG	3 cut(s)	171, 1533, 1542
BstUI	CGCG	2 cut(s)	153, 231
BstV2I	GAAGAC	2 cut(s)	390, 1609
BstZ17I	GTATAC	2 cut(s)	1916, 1994
BsuRI	GGCC	5 cut(s)	208, 228, 477, 588, 961
BtgI	CCRYGG	2 cut(s)	229, 641
BtgZI	GCGATG	1 cut(s)	751
BtsCI	GGATG	5 cut(s)	632, 721, 1148, 1576, 2020
BtsI	GCAGTG	2 cut(s)	777, 1652
BtsIMutI	CAGTG	5 cut(s)	111, 777, 1418, 1428, 1652
BveI	ACCTGC	2 cut(s)	226, 295
Cac8I	GCNNGC	4 cut(s)	111, 391, 763, 1435
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	5 cut(s)	27, 236, 359, 395, 1488
Cfr13I	GGNCC	5 cut(s)	207, 524, 587, 701, 2076
Cfr42I	CCGCGG	1 cut(s)	232
CseI	GACGC	2 cut(s)	159, 395
Csp6I	GTAC	2 cut(s)	416, 2037
CviQI	GTAC	2 cut(s)	416, 2037
DdeI	CTNAG	3 cut(s)	87, 837, 1292
DinI	GGCGCC	1 cut(s)	235
DraI	TTTAAA	2 cut(s)	549, 1189
DriI	GACNNNNNGTC	1 cut(s)	1023
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	3 cut(s)	279, 1224, 1594
Eam1105I	GACNNNNNGTC	1 cut(s)	1023
EarI	CTCTTC	3 cut(s)	279, 1224, 1594
Ecl136II	GAGCTC	1 cut(s)	1316
Eco130I	CCWWGG	3 cut(s)	641, 664, 1701
Eco147I	AGGCCT	1 cut(s)	961
Eco24I	GRGCYC	2 cut(s)	1318, 1561
Eco32I	GATATC	2 cut(s)	1254, 1457
Eco47I	GGWCC	3 cut(s)	524, 701, 2076
Eco53kI	GAGCTC	1 cut(s)	1316
Eco57I	CTGAAG	2 cut(s)	35, 1340
Eco88I	CYCGRG	1 cut(s)	222
Eco91I	GGTNACC	2 cut(s)	1083, 1829
EcoICRI	GAGCTC	1 cut(s)	1316
EcoNI	CCTNNNNNAGG	2 cut(s)	222, 1625
EcoO65I	GGTNACC	2 cut(s)	1083, 1829
EcoRI	GAATTC	1 cut(s)	724
EcoRII	CCWGG	3 cut(s)	859, 1088, 1593
EcoRV	GATATC	2 cut(s)	1254, 1457
EcoT14I	CCWWGG	3 cut(s)	641, 664, 1701
EcoT38I	GRGCYC	2 cut(s)	1318, 1561
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
ErhI	CCWWGG	3 cut(s)	641, 664, 1701
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	6 cut(s)	687, 991, 1046, 1425, 1591, 1735
FauI	CCCGC	1 cut(s)	1672
FbaI	TGATCA	3 cut(s)	952, 1873, 1969
FblI	GTMKAC	3 cut(s)	609, 1915, 1993
FokI	GGATG	5 cut(s)	639, 728, 1135, 1583, 2027
FriOI	GRGCYC	2 cut(s)	1318, 1561
FspBI	CTAG	1 cut(s)	791
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	5 cut(s)	26, 235, 358, 394, 1487
GsaI	CCCAGC	2 cut(s)	1738, 1840
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	5 cut(s)	208, 228, 477, 588, 961
HapII	CCGG	2 cut(s)	147, 1403
HgaI	GACGC	2 cut(s)	159, 395
HhaI	GCGC	5 cut(s)	27, 236, 359, 395, 1488
Hin1I	GRCGYC	1 cut(s)	234
Hin6I	GCGC	5 cut(s)	25, 234, 357, 393, 1486
HinP1I	GCGC	5 cut(s)	25, 234, 357, 393, 1486
HincII	GTYRAC	3 cut(s)	857, 938, 1498
HindII	GTYRAC	3 cut(s)	857, 938, 1498
HindIII	AAGCTT	3 cut(s)	366, 797, 1267
HinfI	GANTC	6 cut(s)	923, 1043, 1475, 1723, 1757, 2029
HpaII	CCGG	2 cut(s)	147, 1403
HphI	GGTGA	2 cut(s)	180, 1118
Hpy166II	GTNNAC	7 cut(s)	610, 857, 938, 1146, 1498, 1916, 1994
Hpy188I	TCNGA	8 cut(s)	738, 750, 957, 1017, 1320, 1391, 1873, 1969
Hpy188III	TCNNGA	7 cut(s)	407, 791, 912, 1040, 1199, 1854, 2024
Hpy8I	GTNNAC	7 cut(s)	610, 857, 938, 1146, 1498, 1916, 1994
HpyCH4III	ACNGT	4 cut(s)	308, 1194, 1521, 2119
HpyCH4IV	ACGT	2 cut(s)	1811, 2002
HpyF3I	CTNAG	3 cut(s)	87, 837, 1292
HpySE526I	ACGT	2 cut(s)	1811, 2002
Hsp92I	GRCGYC	1 cut(s)	234
HspAI	GCGC	5 cut(s)	25, 234, 357, 393, 1486
KasI	GGCGCC	1 cut(s)	233
Ksp22I	TGATCA	3 cut(s)	952, 1873, 1969
KspI	CCGCGG	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	1224
LmnI	GCTCC	3 cut(s)	1313, 1642, 1885
LweI	GCATC	4 cut(s)	520, 774, 917, 1561
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	2 cut(s)	1811, 2002
MaeIII	GTNAC	5 cut(s)	425, 1083, 1207, 1807, 1829
MhlI	GDGCHC	2 cut(s)	1318, 1561
MlsI	TGGCCA	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	477
Mly113I	GGCGCC	1 cut(s)	234
MlyI	GAGTC	4 cut(s)	1052, 1469, 1717, 2023
MmeI	TCCRAC	1 cut(s)	995
Mox20I	TGGCCA	1 cut(s)	477
MroXI	GAANNNNTTC	2 cut(s)	798, 1761
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	548, 1061, 1188
MslI	CAYNNNNRTG	4 cut(s)	770, 825, 913, 1464
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	4 cut(s)	231, 869, 1613, 1836
MspI	CCGG	2 cut(s)	147, 1403
MspR9I	CCNGG	3 cut(s)	861, 1090, 1595
MvaI	CCWGG	3 cut(s)	861, 1090, 1595
MvnI	CGCG	2 cut(s)	153, 231
NarI	GGCGCC	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	641
NlaIV	GGNNCC	2 cut(s)	235, 703
NsbI	TGCGCA	1 cut(s)	26
NspI	RCATGY	2 cut(s)	944, 1496
NspV	TTCGAA	2 cut(s)	555, 1359
PaeR7I	CTCGAG	1 cut(s)	222
PaqCI	CACCTGC	2 cut(s)	226, 295
PceI	AGGCCT	1 cut(s)	961
PciI	ACATGT	2 cut(s)	940, 1492
PciSI	GCTCTTC	1 cut(s)	1224
PcsI	WCGNNNNNNNCGW	1 cut(s)	746
PdmI	GAANNNNTTC	2 cut(s)	798, 1761
PfeI	GAWTC	2 cut(s)	923, 1757
PflFI	GACNNNGTC	1 cut(s)	742
PflMI	CCANNNNNTGG	1 cut(s)	711
PleI	GAGTC	4 cut(s)	1051, 1469, 1717, 2023
PluTI	GGCGCC	1 cut(s)	237
PpsI	GAGTC	4 cut(s)	1051, 1469, 1717, 2023
PscI	ACATGT	2 cut(s)	940, 1492
PshBI	ATTAAT	1 cut(s)	1061
PsiI	TTATAA	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	1318
Psp6I	CCWGG	3 cut(s)	859, 1088, 1593
PspEI	GGTNACC	2 cut(s)	1083, 1829
PspFI	CCCAGC	2 cut(s)	1734, 1836
PspGI	CCWGG	3 cut(s)	859, 1088, 1593
PspN4I	GGNNCC	2 cut(s)	235, 703
PspPI	GGNCC	5 cut(s)	207, 524, 587, 701, 2076
PspXI	VCTCGAGB	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	1546
PstNI	CAGNNNCTG	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	742
PvuII	CAGCTG	2 cut(s)	869, 1613
RsaI	GTAC	2 cut(s)	417, 2038
RsaNI	GTAC	2 cut(s)	416, 2037
RseI	CAYNNNNRTG	4 cut(s)	770, 825, 913, 1464
SacI	GAGCTC	1 cut(s)	1318
SacII	CCGCGG	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	1224
SaqAI	TTAA	3 cut(s)	548, 1061, 1188
Sau96I	GGNCC	5 cut(s)	207, 524, 587, 701, 2076
SchI	GAGTC	4 cut(s)	1052, 1469, 1717, 2023
ScrFI	CCNGG	3 cut(s)	861, 1090, 1595
SduI	GDGCHC	2 cut(s)	1318, 1561
SfaNI	GCATC	4 cut(s)	520, 774, 917, 1561
SfcI	CTRYAG	3 cut(s)	171, 1533, 1542
SfoI	GGCGCC	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	222
Sfr303I	CCGCGG	1 cut(s)	232
SfuI	TTCGAA	2 cut(s)	555, 1359
SgrBI	CCGCGG	1 cut(s)	232
SinI	GGWCC	3 cut(s)	524, 701, 2076
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	4 cut(s)	770, 825, 913, 1464
SmlI	CTYRAG	5 cut(s)	202, 222, 1040, 1477, 2022
SmoI	CTYRAG	5 cut(s)	202, 222, 1040, 1477, 2022
SseBI	AGGCCT	1 cut(s)	961
SsiI	CCGC	8 cut(s)	18, 153, 229, 231, 351, 1289, 1679, 1834
SspDI	GGCGCC	1 cut(s)	233
SspI	AATATT	1 cut(s)	1065
SspMI	CTAG	1 cut(s)	791
SstI	GAGCTC	1 cut(s)	1318
StuI	AGGCCT	1 cut(s)	961
StyD4I	CCNGG	3 cut(s)	859, 1088, 1593
StyI	CCWWGG	3 cut(s)	641, 664, 1701
TaaI	ACNGT	4 cut(s)	308, 1194, 1521, 2119
TaiI	ACGT	2 cut(s)	1814, 2005
TaqI	TCGA	7 cut(s)	130, 223, 555, 911, 1027, 1275, 1359
TauI	GCSGC	3 cut(s)	231, 234, 354
TfiI	GAWTC	2 cut(s)	923, 1757
Tru1I	TTAA	3 cut(s)	548, 1061, 1188
Tru9I	TTAA	3 cut(s)	548, 1061, 1188
TscAI	CASTG	5 cut(s)	111, 777, 1418, 1428, 1652
TspDTI	ATGAA	9 cut(s)	638, 989, 1232, 1242, 1383, 1460, 1524, 1972, 2031
TspRI	CASTG	5 cut(s)	111, 777, 1418, 1428, 1652
Tth111I	GACNNNGTC	1 cut(s)	742
Van91I	CCANNNNNTGG	1 cut(s)	711
VpaK11BI	GGWCC	3 cut(s)	524, 701, 2076
VspI	ATTAAT	1 cut(s)	1061
XagI	CCTNNNNNAGG	2 cut(s)	222, 1625
XapI	RAATTY	5 cut(s)	724, 841, 1354, 1657, 2083
XbaI	TCTAGA	1 cut(s)	790
XceI	RCATGY	2 cut(s)	944, 1496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XhoI	CTCGAG	1 cut(s)	222
XmiI	GTMKAC	3 cut(s)	609, 1915, 1993
XmnI	GAANNNNTTC	2 cut(s)	798, 1761
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.