Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009781

Physical Location & Seq

Genomic Coordinates Forward (+)

29484351 .. 29485494

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0290300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCCCCCACCCAGCGACGGAGCTCCACGTGCAGTAACCAAAATCCCCGGCGATGGAATCAGACCGCTAGTCACGAACGCAGTCGAGAAGGTGATGGAGGCGATGCAGGCGCCGGTCTACTTCGAGAAGTACGATGTCACCGGCGACATGCCGAGGGTGCCGGAGGAGGTGATTGAGTCAATCAGGAAGAACAAGATGTGTCTGAAAGGCGGGCTGGCGACGCCGATGGGCGGCGGCGTTAGCTCGCTGAACATGCAGCTCCGACGAGATCTCGATCTCTATGCTTCGTTGGTCAACTGCTTCAATCTGCGTGGCTTACAGACCAAGCATGGCAACGTCGACATTCTAGTGATCAGGGAGAACACCGAGGGTGAGTACTCGGGGCTCGAGCACGAGATTATTCCTGGAGTTGTTGAAAGCCTTAAAGTTAGATGGCTTTACATATCTGACCAGGTGTGGGATAGGATCGCTCTAGGTCTAGCCTCTCAGTATGGAGTATGCTTACTACACATTCAAATCTTGCCTCGTAATAGAAGATCTGCTGCTACAGAGAAGGTGGAAGATATAGGTAACTTGAAAACTGAGCAGCATAAAAGGAAGCAACATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032501 GO:0032922 GO:0036211 GO:0042176 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

203

Amino Acids

22.61

Weight (kDa)

7.73

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	12 - 155	5e-19	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03940 AT5G18190 AT5G18190
fragaria_vesca	FvH4_1g28110 FvH4_1g28110 FvH4_1g28110 FvH4_1g28110
malus_domestica	MD12G1003400.v1.1
prunus_persica	Prupe.7G003800_v2.0.a1
pyrus_communis	pycom12g00290
rosa_chinensis	RchiOBHm_Chr3g0497131
rosa_laevigata	RLG00000022480
rosa_multiflora	Rmu_ssc0000003.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388390
rosa_rugosa	Rorug03G0290200 Rorug03G0290300
rosa_samantha	Rh3AG334300 Rh3BG371400 Rh3CG368300 Rh3DG369300
rosa_wichuraiana	Rw3G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 157
AccI	GTMKAC	2 cut(s)	117, 339
AciI	CCGC	4 cut(s)	65, 210, 231, 234
AclWI	GGATC	1 cut(s)	473
AcvI	CACGTG	1 cut(s)	29
AcyI	GRCGYC	2 cut(s)	110, 221
AfaI	GTAC	2 cut(s)	131, 377
AfiI	CCNNNNNNNGG	4 cut(s)	17, 53, 230, 457
AgsI	TTSAA	4 cut(s)	304, 416, 515, 577
AhdI	GACNNNNNGTC	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	403, 450
AluBI	AGCT	3 cut(s)	23, 243, 259
AluI	AGCT	3 cut(s)	23, 243, 259
Alw21I	GWGCWC	2 cut(s)	25, 393
AlwI	GGATC	1 cut(s)	473
Ama87I	CYCGRG	2 cut(s)	379, 386
ApeKI	GCWGC	3 cut(s)	256, 542, 586
AspLEI	GCGC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	4 cut(s)	103, 130, 181, 383
AvaI	CYCGRG	2 cut(s)	379, 386
BanI	GGYRCC	2 cut(s)	109, 157
BanII	GRGCYC	2 cut(s)	25, 387
BauI	CACGAG	1 cut(s)	392
BbrPI	CACGTG	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	25, 393
BbvI	GCAGC	3 cut(s)	268, 529, 598
BccI	CCATC	4 cut(s)	47, 88, 220, 426
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	2 cut(s)	405, 452
BclI	TGATCA	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	4 cut(s)	68, 347, 473, 479
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	2 cut(s)	268, 536
BisI	GCNGC	5 cut(s)	232, 235, 257, 543, 587
BlsI	GCNGC	5 cut(s)	233, 236, 258, 544, 588
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	3 cut(s)	48, 405, 452
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmeT110I	CYCGRG	2 cut(s)	379, 386
BmiI	GGNNCC	2 cut(s)	111, 159
BmrFI	CCNGG	3 cut(s)	48, 405, 452
BmsI	GCATC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	110, 221
BsaJI	CCNNGG	3 cut(s)	46, 152, 366
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 53, 230, 457
Bse118I	RCCGGY	2 cut(s)	112, 140
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	405, 452
BseDI	CCNNGG	3 cut(s)	46, 152, 366
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	4 cut(s)	17, 53, 230, 457
BseMII	CTCAG	2 cut(s)	500, 573
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	268, 529, 598
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	51
BshNI	GGYRCC	2 cut(s)	109, 157
BsiHKAI	GWGCWC	2 cut(s)	25, 393
BsiHKCI	CYCGRG	2 cut(s)	379, 386
BsiSI	CCGG	4 cut(s)	48, 113, 141, 161
BslI	CCNNNNNNNGG	4 cut(s)	17, 53, 230, 457
BsoBI	CYCGRG	2 cut(s)	379, 386
Bsp1286I	GDGCHC	3 cut(s)	25, 387, 393
Bsp143I	GATC	5 cut(s)	268, 274, 351, 465, 536
BspACI	CCGC	4 cut(s)	65, 210, 231, 234
BspCNI	CTCAG	2 cut(s)	499, 574
BspLI	GGNNCC	2 cut(s)	111, 159
BspPI	GGATC	1 cut(s)	473
BspT107I	GGYRCC	2 cut(s)	109, 157
BsrFI	RCCGGY	2 cut(s)	112, 140
BssAI	RCCGGY	2 cut(s)	112, 140
BssECI	CCNNGG	3 cut(s)	46, 152, 366
BssMI	GATC	5 cut(s)	268, 274, 351, 465, 536
BssNI	GRCGYC	2 cut(s)	110, 221
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	405, 452
BstACI	GRCGYC	2 cut(s)	110, 221
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	4 cut(s)	108, 212, 216, 245
BstDEI	CTNAG	2 cut(s)	486, 582
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	5 cut(s)	271, 277, 354, 468, 539
BstMBI	GATC	5 cut(s)	268, 274, 351, 465, 536
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 107, 157, 220, 240, 253
BstNI	CCWGG	2 cut(s)	405, 452
BstNSI	RCATGY	2 cut(s)	151, 256
BstSCI	CCNGG	3 cut(s)	46, 403, 450
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	268, 529, 598
BstX2I	RGATCY	2 cut(s)	268, 536
BstYI	RGATCY	2 cut(s)	268, 536
BtgZI	GCGATG	2 cut(s)	66, 116
Cac8I	GCNNGC	4 cut(s)	108, 212, 216, 245
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	112, 140
CseI	GACGC	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	130, 376
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	4 cut(s)	148, 253, 329, 605
CviJI	RGCY	9 cut(s)	23, 214, 243, 259, 315, 385, 420, 436, 482
CviKI_1	RGCY	9 cut(s)	23, 214, 243, 259, 315, 385, 420, 436, 482
CviQI	GTAC	2 cut(s)	130, 376
DdeI	CTNAG	2 cut(s)	486, 582
DinI	GGCGCC	1 cut(s)	111
DpnI	GATC	5 cut(s)	270, 276, 353, 467, 538
DpnII	GATC	5 cut(s)	268, 274, 351, 465, 536
DriI	GACNNNNNGTC	1 cut(s)	68
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	23
Eco24I	GRGCYC	2 cut(s)	25, 387
Eco53kI	GAGCTC	1 cut(s)	23
Eco72I	CACGTG	1 cut(s)	29
Eco88I	CYCGRG	2 cut(s)	379, 386
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	403, 450
EcoT38I	GRGCYC	2 cut(s)	25, 387
EgeI	GGCGCC	1 cut(s)	111
EheI	GGCGCC	1 cut(s)	111
FaeI	CATG	4 cut(s)	151, 256, 332, 608
FatI	CATG	4 cut(s)	147, 252, 328, 604
FauI	CCCGC	1 cut(s)	203
FbaI	TGATCA	1 cut(s)	351
FblI	GTMKAC	2 cut(s)	117, 339
Fnu4HI	GCNGC	5 cut(s)	232, 235, 257, 543, 587
FriOI	GRGCYC	2 cut(s)	25, 387
Fsp4HI	GCNGC	5 cut(s)	232, 235, 257, 543, 587
FspBI	CTAG	4 cut(s)	68, 347, 473, 479
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	5 cut(s)	232, 235, 257, 543, 587
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	113
HapII	CCGG	4 cut(s)	48, 113, 141, 161
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	2 cut(s)	110, 221
Hin1II	CATG	4 cut(s)	151, 256, 332, 608
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	295, 340
HindII	GTYRAC	2 cut(s)	295, 340
HinfI	GANTC	2 cut(s)	57, 176
HpaII	CCGG	4 cut(s)	48, 113, 141, 161
HphI	GGTGA	4 cut(s)	103, 130, 181, 383
Hpy166II	GTNNAC	3 cut(s)	118, 295, 340
Hpy188I	TCNGA	4 cut(s)	62, 204, 263, 448
Hpy188III	TCNNGA	5 cut(s)	73, 85, 124, 184, 272
Hpy8I	GTNNAC	3 cut(s)	118, 295, 340
Hpy99I	CGWCG	4 cut(s)	20, 223, 267, 341
HpyAV	CCTTC	2 cut(s)	82, 547
HpyCH4IV	ACGT	2 cut(s)	28, 336
HpyCH4V	TGCA	3 cut(s)	32, 106, 256
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 107, 157, 220, 240, 253
HpyF3I	CTNAG	2 cut(s)	486, 582
HpySE526I	ACGT	2 cut(s)	28, 336
Hsp92I	GRCGYC	2 cut(s)	110, 221
Hsp92II	CATG	4 cut(s)	151, 256, 332, 608
HspAI	GCGC	1 cut(s)	110
KasI	GGCGCC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	5 cut(s)	268, 274, 351, 465, 536
LmnI	GCTCC	3 cut(s)	20, 28, 264
Lsp1109I	GCAGC	3 cut(s)	268, 529, 598
LweI	GCATC	1 cut(s)	93
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	4 cut(s)	68, 347, 473, 479
MaeII	ACGT	2 cut(s)	28, 336
MaeIII	GTNAC	4 cut(s)	34, 70, 136, 569
MalI	GATC	5 cut(s)	270, 276, 353, 467, 538
MboI	GATC	5 cut(s)	268, 274, 351, 465, 536
MboII	GAAGA	3 cut(s)	199, 546, 572
MflI	RGATCY	2 cut(s)	268, 536
MhlI	GDGCHC	3 cut(s)	25, 387, 393
Mly113I	GGCGCC	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	7 cut(s)	91, 147, 157, 160, 361, 493, 534
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	4 cut(s)	48, 113, 141, 161
MspR9I	CCNGG	3 cut(s)	48, 405, 452
MvaI	CCWGG	2 cut(s)	405, 452
MwoI	GCNNNNNNNGC	6 cut(s)	29, 107, 157, 220, 240, 253
NarI	GGCGCC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	5 cut(s)	268, 274, 351, 465, 536
NlaIII	CATG	4 cut(s)	151, 256, 332, 608
NlaIV	GGNNCC	2 cut(s)	111, 159
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	70, 136
NspI	RCATGY	2 cut(s)	151, 256
PaeR7I	CTCGAG	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	5 cut(s)	233, 236, 258, 544, 588
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	113
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	403, 450
PspCI	CACGTG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	2 cut(s)	403, 450
PspN4I	GGNNCC	2 cut(s)	111, 159
PspXI	VCTCGAGB	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	268, 536
RsaI	GTAC	2 cut(s)	131, 377
RsaNI	GTAC	2 cut(s)	130, 376
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	25
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	5 cut(s)	232, 235, 257, 543, 587
Sau3AI	GATC	5 cut(s)	268, 274, 351, 465, 536
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	48, 405, 452
SduI	GDGCHC	3 cut(s)	25, 387, 393
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	546
SfoI	GGCGCC	1 cut(s)	111
Sfr274I	CTCGAG	1 cut(s)	386
SgrAI	CRCCGGYG	1 cut(s)	140
SlaI	CTCGAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	4 cut(s)	65, 210, 231, 234
SspDI	GGCGCC	1 cut(s)	109
SspMI	CTAG	4 cut(s)	68, 347, 473, 479
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	46, 403, 450
TaiI	ACGT	2 cut(s)	31, 339
TaqI	TCGA	5 cut(s)	84, 123, 273, 339, 387
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	2 cut(s)	70, 136
TseI	GCWGC	3 cut(s)	256, 542, 586
Tsp45I	GTSAC	2 cut(s)	70, 136
TspGWI	ACGGA	1 cut(s)	33
XceI	RCATGY	2 cut(s)	151, 256
XhoI	CTCGAG	1 cut(s)	386
XmiI	GTMKAC	2 cut(s)	117, 339
XspI	CTAG	4 cut(s)	68, 347, 473, 479
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.