Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000161.1

Orthogroup ID

OG0008385

Physical Location & Seq

Genomic Coordinates Forward (+)

67564 .. 68719

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgctagtgggtgattctataatgaggaatcagtgggagtctcttgtgtgcttagtacaaggagttgttccaacaggtcgaaagagagtcacctacaatggtccttctatggcattccatgcaatggactttgggacatcaattgagttttcttgggctccactcctagtagaattgaacaagggagctgcaaacaagaggattttgcatttggatttgatagagaagaatgcaaagtattggagaggagttgatgttcttgtttttgattcagctcactggtggactcactctgacaaaacatcgtcgtgggattactacatggaaggacaatcactgtttacaaatatgaatccaatggttgcataccagaaaggactcactacatgggctaaatgggttgatttaaacctagaccctcgtaagacccgagtaattttccgaagcatgtcacctaggcataacagagaaaatggttggagatgctacaatcagaagaagcctctggcttatttcagtcaccaacatgttcctgaacctctgctagtactgcaaggggtattgagaaagatgagatttccagtttatcttctggacataaccacaatctcagcgtttagaagagacggccacccttctgtgtacagacgggccatgggacaggaagagaagcagcacctgagagagtattcgtcggactgcagccattggtgtcttcctggtgtgcctgatatttggaatgagatgttgagtaccttgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

254

Amino Acids

29.68

Weight (kDa)

9.24

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 252	2.5e-77	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54260
fragaria_vesca	FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640 FvH4_7g05640
malus_domestica	MD02G1256500.v1.1 MD07G1063900.v1.1
prunus_persica	Prupe.2G077200_v2.0.a1
pyrus_communis	pycom02g21700 pycom07g04930
rosa_chinensis	RchiOBHm_Chr1g0332411
rosa_laevigata	RLG00000029672
rosa_multiflora	Rmu_sc0018871.1_g000001 Rmu_sc0027679.1_g000001 Rmu_ssc0000161.1_g000015
rosa_roxburghii	Rroxscaffold_4G00318200
rosa_rugosa	Rorug01G0100600
rosa_samantha	Rh1AG124500 Rh1DG129600
rosa_wichuraiana	Rw1G010130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	628
AfaI	GTAC	4 cut(s)	57, 549, 644, 754
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	718
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	2 cut(s)	188, 275
AluI	AGCT	2 cut(s)	188, 275
Alw26I	GTCTC	2 cut(s)	45, 618
AlwNI	CAGNNNCTG	1 cut(s)	679
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	628, 651
ApeKI	GCWGC	3 cut(s)	188, 673, 702
AspA2I	CCTAGG	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	101, 651
AsuHPI	GGTGA	4 cut(s)	23, 82, 444, 512
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	101
AvrII	CCTAGG	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	3 cut(s)	175, 685, 714
BceAI	ACGGC	1 cut(s)	643
BciT130I	CCWGG	1 cut(s)	720
BcoDI	GTCTC	2 cut(s)	45, 618
BfaI	CTAG	5 cut(s)	5, 167, 413, 456, 545
BfmI	CTRYAG	1 cut(s)	700
BisI	GCNGC	3 cut(s)	189, 674, 703
BlnI	CCTAGG	1 cut(s)	455
BlsI	GCNGC	3 cut(s)	190, 675, 704
BmcAI	AGTACT	1 cut(s)	549
Bme1390I	CCNGG	1 cut(s)	720
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	101, 651
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	720
BmsI	GCATC	1 cut(s)	473
BpiI	GAAGAC	1 cut(s)	707
BsaJI	CCNNGG	2 cut(s)	455, 654
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	284, 581
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	455, 654
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	624, 671
BseNI	ACTGG	2 cut(s)	284, 581
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	175, 685, 714
BshFI	GGCC	2 cut(s)	630, 653
BsiHKCI	CYCGRG	1 cut(s)	429
BslFI	GGGAC	2 cut(s)	148, 672
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	45, 618
BsmBI	CGTCTC	1 cut(s)	618
BsmFI	GGGAC	2 cut(s)	148, 672
BsmI	GAATGC	2 cut(s)	113, 235
BsnI	GGCC	2 cut(s)	630, 653
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	642
Bsp19I	CCATGG	1 cut(s)	654
BspANI	GGCC	2 cut(s)	630, 653
BspCNI	CTCAG	2 cut(s)	623, 672
BspLI	GGNNCC	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	284, 581
BssECI	CCNNGG	2 cut(s)	455, 654
BssT1I	CCWWGG	2 cut(s)	455, 654
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	2 cut(s)	616, 660
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstAUI	TGTACA	1 cut(s)	642
BstDEI	CTNAG	3 cut(s)	52, 610, 680
BstDSI	CCRYGG	1 cut(s)	654
BstMAI	GTCTC	2 cut(s)	45, 618
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 550
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	2 cut(s)	451, 530
BstSCI	CCNGG	1 cut(s)	718
BstSFI	CTRYAG	1 cut(s)	700
BstV1I	GCAGC	3 cut(s)	175, 685, 714
BstV2I	GAAGAC	1 cut(s)	707
BsuRI	GGCC	2 cut(s)	630, 653
BtgI	CCRYGG	1 cut(s)	654
BtsIMutI	CAGTG	3 cut(s)	38, 277, 335
CaiI	CAGNNNCTG	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	101, 651
Csp6I	GTAC	4 cut(s)	56, 548, 643, 753
CviAII	CATG	6 cut(s)	119, 322, 387, 448, 527, 655
CviJI	RGCY	9 cut(s)	158, 188, 275, 392, 502, 509, 630, 653, 705
CviKI_1	RGCY	9 cut(s)	158, 188, 275, 392, 502, 509, 630, 653, 705
CviQI	GTAC	4 cut(s)	56, 548, 643, 753
DdeI	CTNAG	3 cut(s)	52, 610, 680
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	616, 660
EarI	CTCTTC	2 cut(s)	616, 660
Eco130I	CCWWGG	2 cut(s)	455, 654
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	455, 654
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	455, 654
Esp3I	CGTCTC	1 cut(s)	618
FaeI	CATG	6 cut(s)	122, 325, 390, 451, 530, 658
FaqI	GGGAC	2 cut(s)	148, 672
FatI	CATG	6 cut(s)	118, 321, 386, 447, 526, 654
Fnu4HI	GCNGC	3 cut(s)	189, 674, 703
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	3 cut(s)	189, 674, 703
FspBI	CTAG	5 cut(s)	5, 167, 413, 456, 545
GluI	GCNGC	3 cut(s)	189, 674, 703
HaeIII	GGCC	2 cut(s)	630, 653
Hin1II	CATG	6 cut(s)	122, 325, 390, 451, 530, 658
HinfI	GANTC	8 cut(s)	14, 28, 38, 87, 269, 286, 352, 378
HphI	GGTGA	4 cut(s)	23, 82, 444, 512
Hpy166II	GTNNAC	3 cut(s)	285, 342, 643
Hpy188I	TCNGA	4 cut(s)	295, 443, 495, 697
Hpy188III	TCNNGA	2 cut(s)	533, 593
Hpy8I	GTNNAC	3 cut(s)	285, 342, 643
Hpy99I	CGWCG	2 cut(s)	310, 697
HpyAV	CCTTC	3 cut(s)	114, 320, 645
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	7 cut(s)	122, 191, 208, 233, 365, 553, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 550
HpyF3I	CTNAG	3 cut(s)	52, 610, 680
Hsp92II	CATG	6 cut(s)	122, 325, 390, 451, 530, 658
LmnI	GCTCC	2 cut(s)	163, 185
Lsp1109I	GCAGC	3 cut(s)	175, 685, 714
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	5 cut(s)	5, 167, 413, 456, 545
MaeIII	GTNAC	3 cut(s)	88, 450, 518
MboII	GAAGA	6 cut(s)	238, 508, 581, 633, 677, 707
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	141, 173, 435
MlyI	GAGTC	4 cut(s)	47, 96, 280, 372
MmeI	TCCRAC	3 cut(s)	95, 458, 675
MnlI	CCTC	6 cut(s)	18, 192, 239, 429, 513, 549
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	2 cut(s)	307, 525
MspR9I	CCNGG	1 cut(s)	720
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	2 cut(s)	113, 235
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	119, 550
NcoI	CCATGG	1 cut(s)	654
NlaIII	CATG	6 cut(s)	122, 325, 390, 451, 530, 658
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	3 cut(s)	88, 450, 518
NspI	RCATGY	2 cut(s)	451, 530
PciI	ACATGT	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	427
PctI	GAATGC	2 cut(s)	113, 235
PfeI	GAWTC	4 cut(s)	14, 28, 269, 352
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	190, 675, 704
PleI	GAGTC	4 cut(s)	46, 95, 280, 372
PpsI	GAGTC	4 cut(s)	46, 95, 280, 372
PscI	ACATGT	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	101, 651
PstI	CTGCAG	1 cut(s)	704
PstNI	CAGNNNCTG	1 cut(s)	679
RsaI	GTAC	4 cut(s)	57, 549, 644, 754
RsaNI	GTAC	4 cut(s)	56, 548, 643, 753
RseI	CAYNNNNRTG	2 cut(s)	307, 525
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	3 cut(s)	189, 674, 703
Sau96I	GGNCC	2 cut(s)	101, 651
ScaI	AGTACT	1 cut(s)	549
SchI	GAGTC	4 cut(s)	47, 96, 280, 372
ScrFI	CCNGG	1 cut(s)	720
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	9 cut(s)	79, 95, 190, 277, 414, 457, 541, 681, 758
SfaNI	GCATC	1 cut(s)	473
SfcI	CTRYAG	1 cut(s)	700
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	307, 525
Sse9I	AATT	3 cut(s)	141, 173, 435
SspMI	CTAG	5 cut(s)	5, 167, 413, 456, 545
StyD4I	CCNGG	1 cut(s)	718
StyI	CCWWGG	2 cut(s)	455, 654
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	79
TasI	AATT	3 cut(s)	141, 173, 435
TatI	WGTACW	3 cut(s)	55, 547, 642
TfiI	GAWTC	4 cut(s)	14, 28, 269, 352
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	3 cut(s)	38, 284, 342
TseFI	GTSAC	3 cut(s)	88, 450, 518
TseI	GCWGC	3 cut(s)	188, 673, 702
Tsp45I	GTSAC	3 cut(s)	88, 450, 518
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	3 cut(s)	38, 284, 342
Van91I	CCANNNNNTGG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	101
XceI	RCATGY	2 cut(s)	451, 530
XmaJI	CCTAGG	1 cut(s)	455
XspI	CTAG	5 cut(s)	5, 167, 413, 456, 545
ZrmI	AGTACT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.