Rmu_ssc0000204.1_g000060

Vacuolar fusion protein CCZ1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000204.1
OG0005810
Physical Location & Seq
Reverse (-)
265861 .. 269877
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1737 bp
atgatgattttaataactaattttgacaccattatcagcggcgcagcagtgattactgaaacacccccaccgatttacctaccgttcaaatttttcaaagcccttcgtctctctgaaatcgccgagcatctcataccaactcaagatcgaatccctgcacgaagcttcgttccagcctccggctcaactatgggtttggcatccgctagtactgccactgctggcccagaagctatgcaattgtgcatatttgatttgcggaggggtcaaaacgaaggccaagagttggataagatactgtttttctatcctgctgatttgcctttctcagctcagttctctgtgattgggctcagtgaaggactcatcacatttaccagaatcttctctccggaggcggcttgtgaggccatagaagcagataggcattcacatgttttttacgaggccgaacccgatatctggatggttatggtagtggagaaaagcatggagtacgaagcgaaatggagaactgatgcattaagaaaggttcttaaggaagtgcattctctttttgtaatgtttcatggttctgtaagagcgatgcttgataaagacccggggggagtgctagctagatctcatttgtactctttcgtcatggattatcttggtgattttcttgtggggaagaagttactgatgccatcattccgtgactctttaaaggagcgtggaactgtgcagatgcttactgtagggcgggaagccgcaattgaagttcagtcacttgtcagggtacttgaatctagtgctgggaacttgccctgtcattcactaatcttgtttcaggacctgttggtatccacaacactttctcctgatgacaccgtaaacctatttgcatatgctgttttaaggttgacaccccatgttttgtcctctggagcaagttcctggtcttatttacgcaaaggagctacagctaacgtttcctcaagttctatcttgtctgattctggtactgttccagagcagtatcatggctcacacaacaattcttctgctggagacaacagttctcgcgtcatacggccattgaagctggacaagtggtccaaagggaacgatggttttcttgccactgatatttggggtgcagagcctagtaccggggtgtcggccactccaacagtatttctccatcagtcagaggaaaggatgtatctgtgtgcccatcagcataaaagcctcaccttactttttctcattcctgtttcttcagtactaaatggggagcaaggtctttctacagtgaggcagcaagttcttgagaatgtatccctaaagctgttgaaagttgaagaaaaactatcaaaaggatggggcggtgagaacgcatatcatgttagtggatatcggtatttactagtggatggagacagaaacgtatccagggcttctccaccagggaaggtcacaacgcttagtaaggagtccttacttgccttaagtaagcttagagaagaagttgatagagaaaagagtagagcacagtgggatagccccggtcatgaaaaagagttggaagttagcatcagggcaaaaaacaatgcttgggttattgctcgggtaacaagagggaaggagctttacatggttctggaaaaagccaatgaaacacttctttacgcctccgatgctgttgagaagttcagcaacaggtactgcggcggagctttctcgttgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1712

Protein Analysis

578

Amino Acids

63.9

Weight (kDa)

6.24

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Intu_longin_1 PF19031 82 - 191 1.4e-19 First Longin domain of INTU, CCZ1 and HPS4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 286
AccII CGCG 1 cut(s) 1068
AccIII TCCGGA 1 cut(s) 391
AciI CCGC 9 cut(s) 39, 204, 259, 398, 745, 753, 1371, 1713, 1716
AclI AACGTT 1 cut(s) 972
AcoI YGGCCR 2 cut(s) 1076, 1164
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 1248
AfaI GTAC 8 cut(s) 211, 497, 632, 783, 1006, 1153, 1269, 1709
AfiI CCNNNNNNNGG 4 cut(s) 179, 286, 462, 1154
AflII CTTAAG 2 cut(s) 536, 1492
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 8 cut(s) 88, 97, 761, 788, 1084, 1339, 1346, 1732
AhdI GACNNNNNGTC 1 cut(s) 1096
AhlI ACTAGT 1 cut(s) 1411
AjnI CCWGG 3 cut(s) 938, 1436, 1450
Alw21I GWGCWC 1 cut(s) 1537
Alw26I GTCTC 3 cut(s) 113, 1047, 1416
AlwNI CAGNNNCTG 2 cut(s) 838, 1710
Ama87I CYCGRG 2 cut(s) 601, 1611
Aor13HI TCCGGA 1 cut(s) 391
AoxI GGCC 6 cut(s) 223, 277, 408, 447, 1076, 1164
ApeKI GCWGC 2 cut(s) 44, 1303
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 1665
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 3 cut(s) 224, 835, 1098
AsuC2I CCSGG 4 cut(s) 602, 603, 1156, 1551
AsuHPI GGTGA 3 cut(s) 668, 1228, 1385
AsuNHI GCTAGC 1 cut(s) 613
AvaI CYCGRG 2 cut(s) 601, 1611
AvaII GGWCC 2 cut(s) 835, 1098
BaeGI GKGCMC 1 cut(s) 1219
BanII GRGCYC 1 cut(s) 354
BarI GAAGNNNNNNTAC 2 cut(s) 1619, 1651
Bbv12I GWGCWC 1 cut(s) 1537
BbvI GCAGC 2 cut(s) 56, 1315
BccI CCATC 7 cut(s) 460, 697, 1106, 1194, 1227, 1359, 1412
BceAI ACGGC 1 cut(s) 1091
BciT130I CCWGG 3 cut(s) 940, 1438, 1452
BciVI GTATCC 3 cut(s) 856, 1333, 1444
BcnI CCSGG 4 cut(s) 602, 603, 1156, 1551
BcoDI GTCTC 3 cut(s) 113, 1047, 1416
BcuI ACTAGT 1 cut(s) 1411
BfaI CTAG 6 cut(s) 207, 614, 618, 792, 1149, 1412
BfmI CTRYAG 3 cut(s) 738, 963, 1293
BfrI CTTAAG 2 cut(s) 536, 1492
BfuI GTATCC 3 cut(s) 856, 1333, 1444
BglII AGATCT 1 cut(s) 620
BisI GCNGC 6 cut(s) 40, 45, 399, 753, 1304, 1714
BlsI GCNGC 6 cut(s) 41, 46, 400, 754, 1305, 1715
BmcAI AGTACT 2 cut(s) 211, 1269
Bme1390I CCNGG 7 cut(s) 602, 603, 940, 1156, 1438, 1452, 1551
Bme18I GGWCC 2 cut(s) 835, 1098
BmeRI GACNNNNNGTC 1 cut(s) 1096
BmeT110I CYCGRG 2 cut(s) 601, 1611
BmgT120I GGNCC 3 cut(s) 224, 835, 1098
BmrFI CCNGG 7 cut(s) 602, 603, 940, 1156, 1438, 1452, 1551
BmsI GCATC 8 cut(s) 136, 209, 508, 576, 675, 720, 1587, 1672
BmtI GCTAGC 1 cut(s) 617
BpmI CTGGAG 2 cut(s) 948, 1071
BpuEI CTTGAG 3 cut(s) 126, 964, 1334
BpuMI CCSGG 4 cut(s) 602, 603, 1156, 1551
BsaJI CCNNGG 6 cut(s) 601, 602, 1155, 1437, 1451, 1549
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 286, 462, 1154
BseAI TCCGGA 1 cut(s) 391
BseBI CCWGG 3 cut(s) 940, 1438, 1452
BseDI CCNNGG 6 cut(s) 601, 602, 1155, 1437, 1451, 1549
BseGI GGATG 5 cut(s) 200, 471, 1209, 1370, 1423
BseLI CCNNNNNNNGG 4 cut(s) 179, 286, 462, 1154
BseMII CTCAG 3 cut(s) 342, 347, 367
BseSI GKGCMC 1 cut(s) 1219
BseXI GCAGC 2 cut(s) 56, 1315
BseYI CCCAGC 1 cut(s) 797
BsgI GTGCAG 3 cut(s) 141, 746, 1161
Bsh1236I CGCG 1 cut(s) 1068
BshFI GGCC 6 cut(s) 225, 279, 410, 449, 1078, 1166
BsiHKAI GWGCWC 1 cut(s) 1537
BsiHKCI CYCGRG 2 cut(s) 601, 1611
BsiSI CCGG 5 cut(s) 180, 392, 602, 1155, 1551
BslI CCNNNNNNNGG 4 cut(s) 179, 286, 462, 1154
BsmAI GTCTC 3 cut(s) 113, 1047, 1416
BsmBI CGTCTC 1 cut(s) 113
BsmI GAATGC 2 cut(s) 427, 547
BsnI GGCC 6 cut(s) 225, 279, 410, 449, 1078, 1166
BsoBI CYCGRG 2 cut(s) 601, 1611
Bsp1286I GDGCHC 3 cut(s) 354, 1219, 1537
Bsp13I TCCGGA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 145, 620
BspACI CCGC 9 cut(s) 39, 204, 259, 398, 745, 753, 1371, 1713, 1716
BspANI GGCC 6 cut(s) 225, 279, 410, 449, 1078, 1166
BspCNI CTCAG 3 cut(s) 341, 346, 366
BspEI TCCGGA 1 cut(s) 391
BspFNI CGCG 1 cut(s) 1068
BspHI TCATGA 1 cut(s) 1555
BspOI GCTAGC 1 cut(s) 617
BspTI CTTAAG 2 cut(s) 536, 1492
BssECI CCNNGG 6 cut(s) 601, 602, 1155, 1437, 1451, 1549
BssMI GATC 2 cut(s) 145, 620
Bst2UI CCWGG 3 cut(s) 940, 1438, 1452
BstAFI CTTAAG 2 cut(s) 536, 1492
BstC8I GCNNGC 2 cut(s) 223, 615
BstDEI CTNAG 5 cut(s) 328, 333, 353, 1469, 1502
BstF5I GGATG 5 cut(s) 200, 471, 1209, 1370, 1423
BstFNI CGCG 1 cut(s) 1068
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 2 cut(s) 148, 623
BstMAI GTCTC 3 cut(s) 113, 1047, 1416
BstMBI GATC 2 cut(s) 145, 620
BstMWI GCNNNNNNNGC 5 cut(s) 212, 407, 416, 1084, 1682
BstNI CCWGG 3 cut(s) 940, 1438, 1452
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 7 cut(s) 600, 601, 938, 1154, 1436, 1450, 1549
BstSFI CTRYAG 3 cut(s) 738, 963, 1293
BstSLI GKGCMC 1 cut(s) 1219
BstUI CGCG 1 cut(s) 1068
BstV1I GCAGC 2 cut(s) 56, 1315
BstX2I RGATCY 1 cut(s) 620
BstYI RGATCY 1 cut(s) 620
BsuI GTATCC 3 cut(s) 856, 1333, 1444
BsuRI GGCC 6 cut(s) 225, 279, 410, 449, 1078, 1166
BtgZI GCGATG 1 cut(s) 599
BtsCI GGATG 5 cut(s) 200, 471, 1209, 1370, 1423
BtsI GCAGTG 2 cut(s) 54, 216
BtsIMutI CAGTG 6 cut(s) 54, 216, 361, 1125, 1302, 1544
Cac8I GCNNGC 2 cut(s) 223, 615
CaiI CAGNNNCTG 2 cut(s) 838, 1710
CciI TCATGA 1 cut(s) 1555
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 224, 835, 1098
Cfr9I CCCGGG 1 cut(s) 601
CseI GACGC 1 cut(s) 1057
Csp6I GTAC 8 cut(s) 210, 496, 631, 782, 1005, 1152, 1268, 1708
CviAII CATG 9 cut(s) 434, 490, 569, 643, 914, 1025, 1388, 1556, 1639
CviQI GTAC 8 cut(s) 210, 496, 631, 782, 1005, 1152, 1268, 1708
DdeI CTNAG 5 cut(s) 328, 333, 353, 1469, 1502
DpnI GATC 2 cut(s) 147, 622
DpnII GATC 2 cut(s) 145, 620
DraI TTTAAA 1 cut(s) 708
DriI GACNNNNNGTC 1 cut(s) 1096
EaeI YGGCCR 2 cut(s) 1076, 1164
Eam1105I GACNNNNNGTC 1 cut(s) 1096
EciI GGCGGA 1 cut(s) 1731
Eco24I GRGCYC 1 cut(s) 354
Eco32I GATATC 2 cut(s) 460, 1400
Eco47I GGWCC 2 cut(s) 835, 1098
Eco57I CTGAAG 1 cut(s) 1248
Eco88I CYCGRG 2 cut(s) 601, 1611
EcoO109I RGGNCCY 1 cut(s) 835
EcoRII CCWGG 3 cut(s) 938, 1436, 1450
EcoRV GATATC 2 cut(s) 460, 1400
EcoT22I ATGCAT 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 9 cut(s) 437, 493, 572, 646, 917, 1028, 1391, 1559, 1642
FalI AAGNNNNNCTT 2 cut(s) 1466, 1498
FatI CATG 9 cut(s) 433, 489, 568, 642, 913, 1024, 1387, 1555, 1638
FauI CCCGC 1 cut(s) 738
FauNDI CATATG 1 cut(s) 889
Fnu4HI GCNGC 6 cut(s) 40, 45, 399, 753, 1304, 1714
FokI GGATG 5 cut(s) 187, 478, 1216, 1377, 1430
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 6 cut(s) 40, 45, 399, 753, 1304, 1714
FspBI CTAG 6 cut(s) 207, 614, 618, 792, 1149, 1412
GlaI GCGC 1 cut(s) 43
GluI GCNGC 6 cut(s) 40, 45, 399, 753, 1304, 1714
GsaI CCCAGC 1 cut(s) 801
GsuI CTGGAG 2 cut(s) 948, 1071
HaeIII GGCC 6 cut(s) 225, 279, 410, 449, 1078, 1166
HapII CCGG 5 cut(s) 180, 392, 602, 1155, 1551
HgaI GACGC 1 cut(s) 1057
HhaI GCGC 1 cut(s) 44
Hin1II CATG 9 cut(s) 437, 493, 572, 646, 917, 1028, 1391, 1559, 1642
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 906
HindII GTYRAC 1 cut(s) 906
HindIII AAGCTT 2 cut(s) 163, 1499
HinfI GANTC 7 cut(s) 150, 363, 381, 701, 788, 998, 1478
HpaII CCGG 5 cut(s) 180, 392, 602, 1155, 1551
HphI GGTGA 3 cut(s) 668, 1228, 1385
Hpy166II GTNNAC 2 cut(s) 877, 906
Hpy188I TCNGA 4 cut(s) 115, 997, 1195, 1681
Hpy8I GTNNAC 2 cut(s) 877, 906
HpyAV CCTTC 5 cut(s) 113, 269, 353, 1450, 1621
HpyCH4IV ACGT 2 cut(s) 972, 1431
HpyCH4V TGCA 8 cut(s) 158, 238, 246, 521, 547, 727, 887, 1142
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 407, 416, 1084, 1682
HpyF3I CTNAG 5 cut(s) 328, 333, 353, 1469, 1502
HpySE526I ACGT 2 cut(s) 972, 1431
Hsp92II CATG 9 cut(s) 437, 493, 572, 646, 917, 1028, 1391, 1559, 1642
HspAI GCGC 1 cut(s) 42
Kpn2I TCCGGA 1 cut(s) 391
Kzo9I GATC 2 cut(s) 145, 620
LmnI GCTCC 6 cut(s) 712, 929, 959, 1279, 1630, 1718
Lsp1109I GCAGC 2 cut(s) 56, 1315
LweI GCATC 8 cut(s) 136, 209, 508, 576, 675, 720, 1587, 1672
MaeI CTAG 6 cut(s) 207, 614, 618, 792, 1149, 1412
MaeII ACGT 2 cut(s) 972, 1431
MaeIII GTNAC 5 cut(s) 678, 698, 768, 1459, 1615
MalI GATC 2 cut(s) 147, 622
MboI GATC 2 cut(s) 145, 620
MboII GAAGA 6 cut(s) 376, 685, 1035, 1254, 1358, 1520
MfeI CAATTG 2 cut(s) 239, 756
MflI RGATCY 1 cut(s) 620
MhlI GDGCHC 3 cut(s) 354, 1219, 1537
MluCI AATT 6 cut(s) 19, 89, 239, 756, 1039, 1732
MlyI GAGTC 3 cut(s) 357, 695, 1487
MmeI TCCRAC 3 cut(s) 267, 1196, 1548
Mph1103I ATGCAT 1 cut(s) 523
MroI TCCGGA 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 1665
MseI TTAA 6 cut(s) 11, 524, 537, 707, 899, 1493
MslI CAYNNNNRTG 2 cut(s) 432, 1392
MspA1I CMGCKG 1 cut(s) 39
MspCI CTTAAG 2 cut(s) 536, 1492
MspI CCGG 5 cut(s) 180, 392, 602, 1155, 1551
MspR9I CCNGG 7 cut(s) 602, 603, 940, 1156, 1438, 1452, 1551
MunI CAATTG 2 cut(s) 239, 756
Mva1269I GAATGC 2 cut(s) 427, 547
MvaI CCWGG 3 cut(s) 940, 1438, 1452
MvnI CGCG 1 cut(s) 1068
MwoI GCNNNNNNNGC 5 cut(s) 212, 407, 416, 1084, 1682
NciI CCSGG 4 cut(s) 602, 603, 1156, 1551
NdeI CATATG 1 cut(s) 889
NdeII GATC 2 cut(s) 145, 620
NheI GCTAGC 1 cut(s) 613
NlaIII CATG 9 cut(s) 437, 493, 572, 646, 917, 1028, 1391, 1559, 1642
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 3 cut(s) 698, 768, 1459
NsiI ATGCAT 1 cut(s) 523
NspI RCATGY 1 cut(s) 437
PagI TCATGA 1 cut(s) 1555
PciI ACATGT 1 cut(s) 433
PctI GAATGC 2 cut(s) 427, 547
PdmI GAANNNNTTC 1 cut(s) 1665
PfeI GAWTC 4 cut(s) 150, 381, 788, 998
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 6 cut(s) 41, 46, 400, 754, 1305, 1715
PleI GAGTC 3 cut(s) 357, 695, 1486
PpsI GAGTC 3 cut(s) 357, 695, 1486
PpuMI RGGWCCY 1 cut(s) 835
PscI ACATGT 1 cut(s) 433
Psp1406I AACGTT 1 cut(s) 972
Psp5II RGGWCCY 1 cut(s) 835
Psp6I CCWGG 3 cut(s) 938, 1436, 1450
PspFI CCCAGC 1 cut(s) 797
PspGI CCWGG 3 cut(s) 938, 1436, 1450
PspPI GGNCC 3 cut(s) 224, 835, 1098
PspPPI RGGWCCY 1 cut(s) 835
PstNI CAGNNNCTG 2 cut(s) 838, 1710
PsuI RGATCY 1 cut(s) 620
RsaI GTAC 8 cut(s) 211, 497, 632, 783, 1006, 1153, 1269, 1709
RsaNI GTAC 8 cut(s) 210, 496, 631, 782, 1005, 1152, 1268, 1708
RseI CAYNNNNRTG 2 cut(s) 432, 1392
SaqAI TTAA 6 cut(s) 11, 524, 537, 707, 899, 1493
SatI GCNGC 6 cut(s) 40, 45, 399, 753, 1304, 1714
Sau3AI GATC 2 cut(s) 145, 620
Sau96I GGNCC 3 cut(s) 224, 835, 1098
ScaI AGTACT 2 cut(s) 211, 1269
SchI GAGTC 3 cut(s) 357, 695, 1487
ScrFI CCNGG 7 cut(s) 602, 603, 940, 1156, 1438, 1452, 1551
SduI GDGCHC 3 cut(s) 354, 1219, 1537
SfaNI GCATC 8 cut(s) 136, 209, 508, 576, 675, 720, 1587, 1672
SfcI CTRYAG 3 cut(s) 738, 963, 1293
SinI GGWCC 2 cut(s) 835, 1098
SmaI CCCGGG 1 cut(s) 603
SmiMI CAYNNNNRTG 2 cut(s) 432, 1392
SmlI CTYRAG 5 cut(s) 141, 536, 979, 1313, 1492
SmoI CTYRAG 5 cut(s) 141, 536, 979, 1313, 1492
SpeI ACTAGT 1 cut(s) 1411
Sse9I AATT 6 cut(s) 19, 89, 239, 756, 1039, 1732
SsiI CCGC 9 cut(s) 39, 204, 259, 398, 745, 753, 1371, 1713, 1716
SspMI CTAG 6 cut(s) 207, 614, 618, 792, 1149, 1412
StyD4I CCNGG 7 cut(s) 600, 601, 938, 1154, 1436, 1450, 1549
TaiI ACGT 2 cut(s) 975, 1434
TaqI TCGA 1 cut(s) 148
TasI AATT 6 cut(s) 19, 89, 239, 756, 1039, 1732
TatI WGTACW 3 cut(s) 209, 630, 1267
TauI GCSGC 4 cut(s) 42, 401, 755, 1716
TfiI GAWTC 4 cut(s) 150, 381, 788, 998
Tru1I TTAA 6 cut(s) 11, 524, 537, 707, 899, 1493
Tru9I TTAA 6 cut(s) 11, 524, 537, 707, 899, 1493
TscAI CASTG 6 cut(s) 54, 223, 361, 1132, 1302, 1544
TseFI GTSAC 3 cut(s) 698, 768, 1459
TseI GCWGC 2 cut(s) 44, 1303
Tsp45I GTSAC 3 cut(s) 698, 768, 1459
TspDTI ATGAA 3 cut(s) 557, 1572, 1674
TspGWI ACGGA 1 cut(s) 686
TspMI CCCGGG 1 cut(s) 601
TspRI CASTG 6 cut(s) 54, 223, 361, 1132, 1302, 1544
Van91I CCANNNNNTGG 1 cut(s) 286
Vha464I CTTAAG 2 cut(s) 536, 1492
VpaK11BI GGWCC 2 cut(s) 835, 1098
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 437
XmaI CCCGGG 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 1665
XspI CTAG 6 cut(s) 207, 614, 618, 792, 1149, 1412
ZrmI AGTACT 2 cut(s) 211, 1269
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.