Rmu_ssc0000244.1_g000012

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000244.1
OG0018397
Physical Location & Seq
Forward (+)
79061 .. 79954
894 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 894 bp
atgcaatgggtggctctgcctcccccacctactcagtttccggttacagcaaaagtagtgggaatcatctgtgatactccatattataactactataaggaagacgaagggaagaggcagatcatacagcttaatgctgactacaagtgcaaagttatcagacttcttagctcttatgagtatcctaagaactacaggtgcaaggtggagatcttctcttccgagaccggtgaatggagcgagacagttataatttcccctaaaccttgttatcatatctatagcagtattgctcacaatggagtgttgtatcacttgtgtcaatcaactgattctaggacctgtcttgctgggttggatcctttcatgataatgaacaaaatcacgaacagtactcctggcaatggtgttgatcattataaatgttgttatgtagaaatggatacaattgtggtaggcggcttcagtagagattactgtgttgtcagtgaacggtctctgcggatttcctactctgactgggatacattcagtgtatatgtttgggacttaaaagaagaagaagaaggtcatgctgaggtggtcatagaaggaactggaaaactgtgttggaaacacacgggggtatattcactagaccgagatatagctccagatgaatcatcagtatcagtgtttgagctgatagctatcgatccaaataatgatgatatattgtatctaaatattaatggagaccttgtgatgagcaatattcaaacaagaaagtggtcagtgctagttagagagagtcaaatcatcgattctcacttcttccagttgcagcttccactgtggccaacaccaattcctaaactaccgcagcatgccaaagttggaggaactagcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

297

Amino Acids

33.83

Weight (kDa)

5.18

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 50 - 268 1.5e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g12920
pyrus_communis pycom09g11830 pycom09g11840
rosa_chinensis RchiOBHm_Chr5g0021011
rosa_laevigata RLG00000032577
rosa_multiflora Rmu_ssc0000244.1_g000012 Rmu_ssc0000244.1_g000015
rosa_roxburghii Rroxscaffold_1G00057420
rosa_samantha Rh5DG152500 Rh5DG152600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 87, 251, 420
AciI CCGC 3 cut(s) 459, 502, 860
AclWI GGATC 3 cut(s) 353, 366, 689
AcoI YGGCCR 1 cut(s) 836
AcuI CTGAAG 1 cut(s) 448
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 2 cut(s) 234, 404
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 1 cut(s) 758
AjnI CCWGG 1 cut(s) 397
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AluBI AGCT 7 cut(s) 130, 171, 650, 682, 689, 826, 891
AluI AGCT 7 cut(s) 130, 171, 650, 682, 689, 826, 891
Alw26I GTCTC 4 cut(s) 218, 236, 501, 729
AlwI GGATC 3 cut(s) 353, 366, 689
AoxI GGCC 1 cut(s) 836
ApeKI GCWGC 3 cut(s) 823, 862, 888
AseI ATTAAT 1 cut(s) 729
AsiGI ACCGGT 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 339
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BalI TGGCCA 1 cut(s) 838
BamHI GGATCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 108
BbvCI CCTCAGC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 835, 874
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 3 cut(s) 192, 436, 517
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 4 cut(s) 218, 236, 501, 729
BfaI CTAG 5 cut(s) 336, 635, 779, 885, 892
BfmI CTRYAG 2 cut(s) 193, 280
BfuI GTATCC 3 cut(s) 192, 436, 517
BglII AGATCT 1 cut(s) 210
BisI GCNGC 4 cut(s) 460, 824, 863, 889
BlsI GCNGC 4 cut(s) 461, 825, 864, 890
BmcAI AGTACT 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 529
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 576
Bsa29I ATCGAT 2 cut(s) 693, 801
BsaBI GATNNNNATC 1 cut(s) 689
BsaI GGTCTC 3 cut(s) 218, 501, 729
BsaWI WCCGGW 2 cut(s) 40, 227
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 404
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 3 cut(s) 524, 601, 817
Bse3DI GCAATG 2 cut(s) 11, 409
Bse8I GATNNNNATC 1 cut(s) 689
BseBI CCWGG 1 cut(s) 399
BseCI ATCGAT 2 cut(s) 693, 801
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 2 cut(s) 234, 404
BseMI GCAATG 2 cut(s) 11, 409
BseMII CTCAG 2 cut(s) 47, 567
BseNI ACTGG 3 cut(s) 524, 601, 817
BseXI GCAGC 2 cut(s) 835, 874
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 838
BshTI ACCGGT 1 cut(s) 227
BshVI ATCGAT 2 cut(s) 693, 801
BsiSI CCGG 2 cut(s) 41, 228
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 2 cut(s) 234, 404
BsmAI GTCTC 4 cut(s) 218, 236, 501, 729
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 1 cut(s) 838
Bso31I GGTCTC 3 cut(s) 218, 501, 729
Bsp143I GATC 5 cut(s) 120, 210, 358, 412, 694
BspACI CCGC 3 cut(s) 459, 502, 860
BspANI GGCC 1 cut(s) 838
BspCNI CTCAG 2 cut(s) 46, 568
BspDI ATCGAT 2 cut(s) 693, 801
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 3 cut(s) 353, 366, 689
BspTNI GGTCTC 3 cut(s) 218, 501, 729
BsrDI GCAATG 2 cut(s) 11, 409
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 3 cut(s) 524, 601, 817
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 5 cut(s) 120, 210, 358, 412, 694
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 6 cut(s) 247, 392, 479, 495, 606, 834
Bst6I CTCTTC 2 cut(s) 107, 223
BstC8I GCNNGC 1 cut(s) 867
BstDEI CTNAG 4 cut(s) 33, 167, 186, 576
BstKTI GATC 5 cut(s) 123, 213, 361, 415, 697
BstMAI GTCTC 4 cut(s) 218, 236, 501, 729
BstMBI GATC 5 cut(s) 120, 210, 358, 412, 694
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 869
BstSCI CCNGG 1 cut(s) 397
BstSFI CTRYAG 2 cut(s) 193, 280
BstV1I GCAGC 2 cut(s) 835, 874
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 2 cut(s) 210, 358
BstYI RGATCY 2 cut(s) 210, 358
Bsu15I ATCGAT 2 cut(s) 693, 801
BsuI GTATCC 3 cut(s) 192, 436, 517
BsuRI GGCC 1 cut(s) 838
BsuTUI ATCGAT 2 cut(s) 693, 801
BtsIMutI CAGTG 5 cut(s) 493, 538, 678, 780, 830
Cac8I GCNNGC 1 cut(s) 867
CciI TCATGA 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 339
ClaI ATCGAT 2 cut(s) 693, 801
Csp6I GTAC 1 cut(s) 393
CspAI ACCGGT 1 cut(s) 227
CspCI CAANNNNNGTGG 2 cut(s) 39, 74
CviAII CATG 3 cut(s) 367, 572, 866
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 4 cut(s) 33, 167, 186, 576
DpnI GATC 5 cut(s) 122, 212, 360, 414, 696
DpnII GATC 5 cut(s) 120, 210, 358, 412, 694
EaeI YGGCCR 1 cut(s) 836
Eam1104I CTCTTC 2 cut(s) 107, 223
EarI CTCTTC 2 cut(s) 107, 223
Eco31I GGTCTC 3 cut(s) 218, 501, 729
Eco47I GGWCC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 448
EcoO109I RGGNCCY 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 397
FaeI CATG 3 cut(s) 370, 575, 869
FaqI GGGAC 1 cut(s) 560
FatI CATG 3 cut(s) 366, 571, 865
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 460, 824, 863, 889
Fsp4HI GCNGC 4 cut(s) 460, 824, 863, 889
FspBI CTAG 5 cut(s) 336, 635, 779, 885, 892
GluI GCNGC 4 cut(s) 460, 824, 863, 889
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 636
HaeIII GGCC 1 cut(s) 838
HapII CCGG 2 cut(s) 41, 228
Hin1II CATG 3 cut(s) 370, 575, 869
HinfI GANTC 5 cut(s) 63, 332, 659, 790, 803
HpaII CCGG 2 cut(s) 41, 228
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 3 cut(s) 161, 223, 517
Hpy188III TCNNGA 3 cut(s) 367, 385, 653
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 3 cut(s) 101, 560, 584
HpyCH4III ACNGT 6 cut(s) 247, 392, 479, 495, 606, 834
HpyCH4V TGCA 4 cut(s) 4, 150, 201, 823
HpyF3I CTNAG 4 cut(s) 33, 167, 186, 576
Hsp92II CATG 3 cut(s) 370, 575, 869
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 5 cut(s) 120, 210, 358, 412, 694
LmnI GCTCC 2 cut(s) 237, 655
Lsp1109I GCAGC 2 cut(s) 835, 874
MaeI CTAG 5 cut(s) 336, 635, 779, 885, 892
MaeIII GTNAC 1 cut(s) 43
MalI GATC 5 cut(s) 122, 212, 360, 414, 696
MboI GATC 5 cut(s) 120, 210, 358, 412, 694
MboII GAAGA 8 cut(s) 113, 124, 205, 210, 569, 572, 575, 805
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 210, 358
MlsI TGGCCA 1 cut(s) 838
MluCI AATT 3 cut(s) 252, 447, 846
MluNI TGGCCA 1 cut(s) 838
MlyI GAGTC 1 cut(s) 799
MmeI TCCRAC 3 cut(s) 336, 590, 856
MnlI CCTC 4 cut(s) 30, 108, 571, 872
Mox20I TGGCCA 1 cut(s) 838
MscI TGGCCA 1 cut(s) 838
MseI TTAA 3 cut(s) 132, 551, 729
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 838
MspI CCGG 2 cut(s) 41, 228
MspR9I CCNGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 399
NdeII GATC 5 cut(s) 120, 210, 358, 412, 694
NlaIII CATG 3 cut(s) 370, 575, 869
NlaIV GGNNCC 1 cut(s) 360
NspI RCATGY 1 cut(s) 869
PaeI GCATGC 1 cut(s) 869
PagI TCATGA 1 cut(s) 366
PfeI GAWTC 4 cut(s) 63, 332, 659, 803
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 4 cut(s) 461, 825, 864, 890
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
PpuMI RGGWCCY 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 729
PsiI TTATAA 3 cut(s) 87, 251, 420
Psp5II RGGWCCY 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 339
PspPPI RGGWCCY 1 cut(s) 339
PsuI RGATCY 2 cut(s) 210, 358
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 3 cut(s) 132, 551, 729
SatI GCNGC 4 cut(s) 460, 824, 863, 889
Sau3AI GATC 5 cut(s) 120, 210, 358, 412, 694
Sau96I GGNCC 1 cut(s) 339
ScaI AGTACT 1 cut(s) 394
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 1 cut(s) 399
SfcI CTRYAG 2 cut(s) 193, 280
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 371
SphI GCATGC 1 cut(s) 869
Sse9I AATT 3 cut(s) 252, 447, 846
SsiI CCGC 3 cut(s) 459, 502, 860
SspI AATATT 2 cut(s) 727, 754
SspMI CTAG 5 cut(s) 336, 635, 779, 885, 892
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 6 cut(s) 247, 392, 479, 495, 606, 834
TaqI TCGA 2 cut(s) 693, 801
TaqII GACCGA 1 cut(s) 654
TasI AATT 3 cut(s) 252, 447, 846
TatI WGTACW 1 cut(s) 392
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 4 cut(s) 63, 332, 659, 803
Tru1I TTAA 3 cut(s) 132, 551, 729
Tru9I TTAA 3 cut(s) 132, 551, 729
TscAI CASTG 5 cut(s) 493, 538, 678, 780, 837
TseI GCWGC 3 cut(s) 823, 862, 888
TspDTI ATGAA 3 cut(s) 355, 389, 672
TspRI CASTG 5 cut(s) 493, 538, 678, 780, 837
VpaK11BI GGWCC 1 cut(s) 339
VspI ATTAAT 1 cut(s) 729
XceI RCATGY 1 cut(s) 869
XspI CTAG 5 cut(s) 336, 635, 779, 885, 892
ZrmI AGTACT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.