Rmu_ssc0000252.1_g000009

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000252.1
OG0010792
Physical Location & Seq
Forward (+)
42920 .. 45174
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2112 bp
atggatgaagtgaatgtgaatggggtagtagatgagcagagtggagagtatacacctcacaaggaaggctataaccagcaaggctctccgagaagtccattgagccctcaaagtcctcatagtgactccattggtatgcctatggatggccggattgacacctcgattgagcagctgtatcacaatgtatgtgaaatgcagagctctgatcaatctccatccagggctagttttggatcatttggtgctgagtcgaggattgattcagagttgaatcatcttgttgggtatgtccatccagatgtggaggtaaggaaagaggttgttgtggaaaccagagaggatggtacctcaactcctgaaaaagaaaatgtgtctgtgggaacaaaggtgaagattcaatctcctaggttcagtcctaggagcaaatctcccaatcagaggcctccccttgacaagaggagtccaagaaatgcaagttcagtgatgtcgaagaacaagctgagaagtttagctttacgagggatgaagcttcagaatggagtcgaggatccctctgtagagggattggatagccctgatcttggacccttcttgcttaagcaagcaagggatatgatttctgctggtgaaagtccccggaaggcgcttgagttggctcgtcgggcagtgaaatcatttgagaaatgtacaaccgagaaacccagtttagagttggtcatgtgtttgcatgttttggcatcaatccattgcagcttaggccagtacaatgaggcaattccagttcttgagcgcgccattgatattccagctatagaggatggccatgaccacgcactagccaagtttgcagggtgcatgcaattgggtgacatttatgcaatgacgggtcagattgagaattcaatactgttctacacagcaggtatggagatacaaaggcaagtcttgggagaaacagaccctcgatttggtgagacatgtcgatatgtagctgaggctcatgtccaagcattgcagtttgatgaggctgagaagctgtgtctaatggcccttgaaatccacagagagaatggttctccagcttcacttgaggaggcggcagatagaagactcatgggacttatctgtgactcaaaaggagattatgaagctgctcttgagcattatgttttagcaggcatgtccatgtctgccaatggccatgaaacagatgcagcttcaattgattgcagtattggagatgcttatctggccttggctcggtatgatgaggcagtctttgctttccagaaagcactgactgtgtttaagaccactaaaggagagacacatccagcagtagcttctgtttatgtccggttagctgatctttacaacaagatagggaagtttaaggagtccaagtcgtactgtgaaaatgcacataagatctacgggaagccaaatcccggaacccctgcagaagagattgctagcggtcttattgatgtttctgctatctatcaatctatgaatgatttggagcaggccctcaagttactcaagaaggctttgaagatgtttggtgactccccaggtcaacaaagtacaattgcaggaattgaggctcagatgggggtcatgtattatatgatgggaaattattcagactcctacaacaccttcaagagttccacaaccaagttcagggctagtggagagaaaaaatcagcattgtttgggattgctctgaaccaaatgggtctagcctgtgtgcagtgctattcaataaacgaggctgcagacctgtttgaagaagccaggaatatcttagagaaggaatacgggccatatcaccctgatacattgggcgtgtatagtaatttggctggcacatacgatgcaatgggcaggttggatgatgccattgaaattttggaatatgttgttgggatgagggaagagaagcttggaacggcaaatcctgatgtggccgatgagaagcggaggttggctgtgttgttgaaagaagcaggcagggtgaggaacaggaaaccaagatcactagagacacttctcgacactgccaacccccaaattagaagaagtgacattattgaggtactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

703

Amino Acids

77.39

Weight (kDa)

5.29

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 331 - 390 2.7e-07 Tetratricopeptide repeat
TPR_MalT PF17874 373 - 519 2.3e-07 MalT-like TPR region
TPR_NPHP3 PF24885 404 - 526 1.6e-09 Nephrocystin-3 TPR domain
TPR_12 PF13424 406 - 468 4.2e-09 Tetratricopeptide repeat
TPR_12 PF13424 449 - 522 1.5e-09 Tetratricopeptide repeat
TPR_12 PF13424 577 - 646 8.9e-11 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 914, 1884
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 795
AciI CCGC 3 cut(s) 1100, 1479, 1987
AclWI GGATC 3 cut(s) 244, 545, 558
AcoI YGGCCR 4 cut(s) 148, 823, 1201, 1974
AcsI RAATTY 2 cut(s) 901, 1914
AcuI CTGAAG 1 cut(s) 518
AfaI GTAC 6 cut(s) 349, 691, 767, 1412, 1591, 2106
AfiI CCNNNNNNNGG 7 cut(s) 146, 441, 584, 971, 1263, 1451, 1689
AflII CTTAAG 1 cut(s) 599
AflIII ACRYGT 1 cut(s) 980
AjnI CCWGG 3 cut(s) 221, 1576, 1802
AjuI GAANNNNNNNTTGG 6 cut(s) 1914, 1935, 1946, 1967, 1976, 2008
AloI GAACNNNNNNTCC 2 cut(s) 1948, 1980
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 3 cut(s) 971, 1322, 2045
AlwI GGATC 3 cut(s) 244, 545, 558
ApeKI GCWGC 5 cut(s) 172, 753, 1154, 1217, 1781
ApoI RAATTY 2 cut(s) 901, 1914
ArsI GACNNNNNNTTYG 2 cut(s) 953, 985
Asp700I GAANNNNTTC 1 cut(s) 1645
Asp718I GGTACC 1 cut(s) 347
AspA2I CCTAGG 2 cut(s) 407, 419
AspLEI GCGC 3 cut(s) 649, 795, 797
AspS9I GGNCC 4 cut(s) 587, 1051, 1531, 1829
AsuC2I CCSGG 2 cut(s) 640, 1452
AsuHPI GGTGA 7 cut(s) 403, 641, 881, 986, 1580, 1829, 2035
AsuNHI GCTAGC 1 cut(s) 1475
AvaII GGWCC 1 cut(s) 587
AvrII CCTAGG 2 cut(s) 407, 419
BalI TGGCCA 2 cut(s) 825, 1203
BamHI GGATCC 1 cut(s) 550
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 2 cut(s) 107, 206
BbsI GAAGAC 1 cut(s) 1117
Bbv12I GWGCWC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 996
BbvI GCAGC 5 cut(s) 184, 765, 1141, 1229, 1768
BccI CCATC 7 cut(s) 140, 226, 303, 338, 815, 1609, 1630
BceAI ACGGC 1 cut(s) 1974
BciT130I CCWGG 3 cut(s) 223, 1578, 1804
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 2 cut(s) 640, 1452
BcoDI GTCTC 3 cut(s) 971, 1322, 2045
BfaI CTAG 8 cut(s) 228, 408, 420, 839, 1476, 1695, 1748, 2048
BfmI CTRYAG 4 cut(s) 558, 813, 1461, 1782
BfoI RGCGCY 1 cut(s) 650
BfrI CTTAAG 1 cut(s) 599
BfuAI ACCTGC 2 cut(s) 914, 1884
BglII AGATCT 1 cut(s) 1431
BisI GCNGC 6 cut(s) 173, 754, 1101, 1155, 1218, 1782
BlnI CCTAGG 2 cut(s) 407, 419
BlsI GCNGC 6 cut(s) 174, 755, 1102, 1156, 1219, 1783
Bme1390I CCNGG 5 cut(s) 223, 640, 1452, 1578, 1804
Bme18I GGWCC 1 cut(s) 587
BmgT120I GGNCC 4 cut(s) 587, 1051, 1531, 1829
BmiI GGNNCC 4 cut(s) 349, 552, 589, 1456
BmrFI CCNGG 5 cut(s) 223, 640, 1452, 1578, 1804
BmrI ACTGGG 1 cut(s) 699
BmsI GCATC 5 cut(s) 749, 1204, 1234, 1873, 1894
BmtI GCTAGC 1 cut(s) 1479
BmuI ACTGGG 1 cut(s) 699
BpiI GAAGAC 1 cut(s) 1117
BplI GAGNNNNNCTC 4 cut(s) 415, 447, 539, 571
BpmI CTGGAG 1 cut(s) 1065
Bpu10I CCTNAGC 2 cut(s) 757, 996
BpuEI CTTGAG 6 cut(s) 671, 809, 1112, 1181, 1520, 1529
BpuMI CCSGG 2 cut(s) 640, 1452
BsaBI GATNNNNATC 1 cut(s) 1248
BsaJI CCNNGG 6 cut(s) 222, 407, 419, 638, 1257, 1576
BsaWI WCCGGW 1 cut(s) 1359
BsaXI ACNNNNNCTCC 4 cut(s) 340, 370, 1391, 1421
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 441, 584, 971, 1263, 1451, 1689
Bse1I ACTGG 3 cut(s) 705, 763, 782
Bse3DI GCAATG 4 cut(s) 748, 888, 1013, 1893
Bse8I GATNNNNATC 1 cut(s) 1248
BseBI CCWGG 3 cut(s) 223, 1578, 1804
BseDI CCNNGG 6 cut(s) 222, 407, 419, 638, 1257, 1576
BseJI GATNNNNATC 1 cut(s) 1248
BseLI CCNNNNNNNGG 7 cut(s) 146, 441, 584, 971, 1263, 1451, 1689
BseMI GCAATG 4 cut(s) 748, 888, 1013, 1893
BseMII CTCAG 5 cut(s) 240, 494, 987, 1023, 1625
BseNI ACTGG 3 cut(s) 705, 763, 782
BsePI GCGCGC 1 cut(s) 793
BseRI GAGGAG 2 cut(s) 475, 1109
BseXI GCAGC 5 cut(s) 184, 765, 1141, 1229, 1768
BsgI GTGCAG 1 cut(s) 1778
Bsh1236I CGCG 1 cut(s) 795
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 4 cut(s) 151, 640, 1360, 1452
BslFI GGGAC 2 cut(s) 621, 1134
BslI CCNNNNNNNGG 7 cut(s) 146, 441, 584, 971, 1263, 1451, 1689
BsmAI GTCTC 3 cut(s) 971, 1322, 2045
BsmFI GGGAC 2 cut(s) 621, 1134
Bsp1286I GDGCHC 2 cut(s) 107, 206
Bsp1407I TGTACA 1 cut(s) 689
Bsp143I GATC 7 cut(s) 208, 236, 550, 580, 1369, 1431, 2042
BspACI CCGC 3 cut(s) 1100, 1479, 1987
BspCNI CTCAG 5 cut(s) 241, 495, 988, 1024, 1624
BspFNI CGCG 1 cut(s) 795
BspLI GGNNCC 4 cut(s) 349, 552, 589, 1456
BspMAI CTGCAG 2 cut(s) 1465, 1786
BspMI ACCTGC 2 cut(s) 914, 1884
BspOI GCTAGC 1 cut(s) 1479
BspPI GGATC 3 cut(s) 244, 545, 558
BspT107I GGYRCC 1 cut(s) 347
BspTI CTTAAG 1 cut(s) 599
BsrDI GCAATG 4 cut(s) 748, 888, 1013, 1893
BsrGI TGTACA 1 cut(s) 689
BsrI ACTGG 3 cut(s) 705, 763, 782
BssECI CCNNGG 6 cut(s) 222, 407, 419, 638, 1257, 1576
BssHII GCGCGC 1 cut(s) 793
BssMI GATC 7 cut(s) 208, 236, 550, 580, 1369, 1431, 2042
BssNAI GTATAC 1 cut(s) 51
BssT1I CCWWGG 3 cut(s) 407, 419, 1257
Bst1107I GTATAC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 223, 1578, 1804
Bst4CI ACNGT 4 cut(s) 912, 1306, 1415, 2109
Bst6I CTCTTC 2 cut(s) 1461, 1938
BstAFI CTTAAG 1 cut(s) 599
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstAUI TGTACA 1 cut(s) 689
BstC8I GCNNGC 8 cut(s) 606, 795, 860, 1180, 1477, 1530, 1873, 2017
BstDEI CTNAG 7 cut(s) 249, 503, 757, 996, 1032, 1611, 1813
BstFNI CGCG 1 cut(s) 795
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 3 cut(s) 649, 795, 797
BstKTI GATC 7 cut(s) 211, 239, 553, 583, 1372, 1434, 2045
BstMAI GTCTC 3 cut(s) 971, 1322, 2045
BstMBI GATC 7 cut(s) 208, 236, 550, 580, 1369, 1431, 2042
BstMWI GCNNNNNNNGC 5 cut(s) 665, 759, 848, 1253, 1283
BstNI CCWGG 3 cut(s) 223, 1578, 1804
BstNSI RCATGY 4 cut(s) 734, 862, 984, 1186
BstSCI CCNGG 5 cut(s) 221, 638, 1450, 1576, 1802
BstSFI CTRYAG 4 cut(s) 558, 813, 1461, 1782
BstUI CGCG 1 cut(s) 795
BstV1I GCAGC 5 cut(s) 184, 765, 1141, 1229, 1768
BstV2I GAAGAC 1 cut(s) 1117
BstX2I RGATCY 2 cut(s) 550, 1431
BstYI RGATCY 2 cut(s) 550, 1431
BstZ17I GTATAC 1 cut(s) 51
BtsI GCAGTG 3 cut(s) 675, 1766, 2064
BtsIMutI CAGTG 5 cut(s) 489, 675, 1298, 1766, 2064
BveI ACCTGC 2 cut(s) 914, 1884
Cac8I GCNNGC 8 cut(s) 606, 795, 860, 1180, 1477, 1530, 1873, 2017
CfoI GCGC 3 cut(s) 649, 795, 797
Cfr13I GGNCC 4 cut(s) 587, 1051, 1531, 1829
Csp6I GTAC 6 cut(s) 348, 690, 766, 1411, 1590, 2105
CviQI GTAC 6 cut(s) 348, 690, 766, 1411, 1590, 2105
DdeI CTNAG 7 cut(s) 249, 503, 757, 996, 1032, 1611, 1813
DpnI GATC 7 cut(s) 210, 238, 552, 582, 1371, 1433, 2044
DpnII GATC 7 cut(s) 208, 236, 550, 580, 1369, 1431, 2042
EaeI YGGCCR 4 cut(s) 148, 823, 1201, 1974
Eam1104I CTCTTC 2 cut(s) 1461, 1938
EarI CTCTTC 2 cut(s) 1461, 1938
Ecl136II GAGCTC 1 cut(s) 204
Eco130I CCWWGG 3 cut(s) 407, 419, 1257
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 2 cut(s) 107, 206
Eco47I GGWCC 1 cut(s) 587
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 1531
EcoRI GAATTC 1 cut(s) 901
EcoRII CCWGG 3 cut(s) 221, 1576, 1802
EcoT14I CCWWGG 3 cut(s) 407, 419, 1257
EcoT38I GRGCYC 2 cut(s) 107, 206
ErhI CCWWGG 3 cut(s) 407, 419, 1257
FalI AAGNNNNNCTT 6 cut(s) 499, 531, 1143, 1175, 1935, 1967
FaqI GGGAC 2 cut(s) 621, 1134
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 6 cut(s) 173, 754, 1101, 1155, 1218, 1782
FriOI GRGCYC 2 cut(s) 107, 206
Fsp4HI GCNGC 6 cut(s) 173, 754, 1101, 1155, 1218, 1782
FspBI CTAG 8 cut(s) 228, 408, 420, 839, 1476, 1695, 1748, 2048
GlaI GCGC 3 cut(s) 648, 794, 796
GluI GCNGC 6 cut(s) 173, 754, 1101, 1155, 1218, 1782
GsuI CTGGAG 1 cut(s) 1065
HaeII RGCGCY 1 cut(s) 650
HapII CCGG 4 cut(s) 151, 640, 1360, 1452
HhaI GCGC 3 cut(s) 649, 795, 797
Hin6I GCGC 3 cut(s) 647, 793, 795
HinP1I GCGC 3 cut(s) 647, 793, 795
HincII GTYRAC 1 cut(s) 1583
HindII GTYRAC 1 cut(s) 1583
HindIII AAGCTT 2 cut(s) 530, 1949
HpaII CCGG 4 cut(s) 151, 640, 1360, 1452
HphI GGTGA 7 cut(s) 403, 641, 881, 986, 1580, 1829, 2035
Hpy166II GTNNAC 2 cut(s) 51, 1583
Hpy188I TCNGA 9 cut(s) 90, 208, 268, 441, 537, 894, 1614, 1651, 1734
Hpy188III TCNNGA 9 cut(s) 299, 359, 788, 1160, 1291, 1546, 1669, 1967, 2060
Hpy8I GTNNAC 2 cut(s) 51, 1583
Hpy99I CGWCG 1 cut(s) 666
HpyAV CCTTC 6 cut(s) 59, 601, 637, 1543, 1675, 1813
HpyCH4III ACNGT 4 cut(s) 912, 1306, 1415, 2109
HpyF10VI GCNNNNNNNGC 5 cut(s) 665, 759, 848, 1253, 1283
HpyF3I CTNAG 7 cut(s) 249, 503, 757, 996, 1032, 1611, 1813
HspAI GCGC 3 cut(s) 647, 793, 795
KpnI GGTACC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 7 cut(s) 208, 236, 550, 580, 1369, 1431, 2042
LmnI GCTCC 2 cut(s) 423, 1525
Lsp1109I GCAGC 5 cut(s) 184, 765, 1141, 1229, 1768
LweI GCATC 5 cut(s) 749, 1204, 1234, 1873, 1894
MaeI CTAG 8 cut(s) 228, 408, 420, 839, 1476, 1695, 1748, 2048
MaeIII GTNAC 6 cut(s) 122, 869, 1130, 1539, 1568, 2090
MalI GATC 7 cut(s) 210, 238, 552, 582, 1371, 1433, 2044
MboI GATC 7 cut(s) 208, 236, 550, 580, 1369, 1431, 2042
MboII GAAGA 8 cut(s) 406, 505, 1122, 1478, 1570, 1808, 1955, 2097
MfeI CAATTG 3 cut(s) 863, 1224, 1593
MflI RGATCY 2 cut(s) 550, 1431
MhlI GDGCHC 2 cut(s) 107, 206
MlsI TGGCCA 2 cut(s) 825, 1203
MluNI TGGCCA 2 cut(s) 825, 1203
MlyI GAGTC 9 cut(s) 119, 260, 472, 552, 1107, 1127, 1409, 1565, 1646
MmeI TCCRAC 1 cut(s) 1878
Mox20I TGGCCA 2 cut(s) 825, 1203
MroXI GAANNNNTTC 1 cut(s) 1645
MscI TGGCCA 2 cut(s) 825, 1203
MseI TTAA 3 cut(s) 600, 1311, 1395
MslI CAYNNNNRTG 3 cut(s) 134, 300, 1187
Msp20I TGGCCA 2 cut(s) 825, 1203
MspA1I CMGCKG 1 cut(s) 175
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 4 cut(s) 151, 640, 1360, 1452
MspR9I CCNGG 5 cut(s) 223, 640, 1452, 1578, 1804
MunI CAATTG 3 cut(s) 863, 1224, 1593
MvaI CCWGG 3 cut(s) 223, 1578, 1804
MvnI CGCG 1 cut(s) 795
MwoI GCNNNNNNNGC 5 cut(s) 665, 759, 848, 1253, 1283
NciI CCSGG 2 cut(s) 640, 1452
NdeII GATC 7 cut(s) 208, 236, 550, 580, 1369, 1431, 2042
NheI GCTAGC 1 cut(s) 1475
NlaIV GGNNCC 4 cut(s) 349, 552, 589, 1456
NmuCI GTSAC 5 cut(s) 122, 869, 1130, 1568, 2090
NspI RCATGY 4 cut(s) 734, 862, 984, 1186
PaeI GCATGC 1 cut(s) 862
PauI GCGCGC 1 cut(s) 793
PceI AGGCCT 1 cut(s) 445
PciI ACATGT 1 cut(s) 980
PdmI GAANNNNTTC 1 cut(s) 1645
PfeI GAWTC 3 cut(s) 263, 274, 397
PfoI TCCNGGA 1 cut(s) 1450
PkrI GCNGC 6 cut(s) 174, 755, 1102, 1156, 1219, 1783
PleI GAGTC 9 cut(s) 119, 259, 471, 551, 1107, 1127, 1408, 1565, 1646
PpsI GAGTC 9 cut(s) 119, 259, 471, 551, 1107, 1127, 1408, 1565, 1646
PscI ACATGT 1 cut(s) 980
Psp124BI GAGCTC 1 cut(s) 206
Psp6I CCWGG 3 cut(s) 221, 1576, 1802
PspGI CCWGG 3 cut(s) 221, 1576, 1802
PspN4I GGNNCC 4 cut(s) 349, 552, 589, 1456
PspPI GGNCC 4 cut(s) 587, 1051, 1531, 1829
PstI CTGCAG 2 cut(s) 1465, 1786
PsuI RGATCY 2 cut(s) 550, 1431
PteI GCGCGC 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 6 cut(s) 349, 691, 767, 1412, 1591, 2106
RsaNI GTAC 6 cut(s) 348, 690, 766, 1411, 1590, 2105
RseI CAYNNNNRTG 3 cut(s) 134, 300, 1187
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 3 cut(s) 600, 1311, 1395
SatI GCNGC 6 cut(s) 173, 754, 1101, 1155, 1218, 1782
Sau3AI GATC 7 cut(s) 208, 236, 550, 580, 1369, 1431, 2042
Sau96I GGNCC 4 cut(s) 587, 1051, 1531, 1829
SchI GAGTC 9 cut(s) 119, 260, 472, 552, 1107, 1127, 1409, 1565, 1646
ScrFI CCNGG 5 cut(s) 223, 640, 1452, 1578, 1804
SduI GDGCHC 2 cut(s) 107, 206
SfaNI GCATC 5 cut(s) 749, 1204, 1234, 1873, 1894
SfcI CTRYAG 4 cut(s) 558, 813, 1461, 1782
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 3 cut(s) 134, 300, 1187
SmlI CTYRAG 7 cut(s) 599, 650, 788, 1091, 1160, 1535, 1544
SmoI CTYRAG 7 cut(s) 599, 650, 788, 1091, 1160, 1535, 1544
SphI GCATGC 1 cut(s) 862
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 3 cut(s) 1100, 1479, 1987
SspMI CTAG 8 cut(s) 228, 408, 420, 839, 1476, 1695, 1748, 2048
SstI GAGCTC 1 cut(s) 206
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 5 cut(s) 221, 638, 1450, 1576, 1802
StyI CCWWGG 3 cut(s) 407, 419, 1257
TaaI ACNGT 4 cut(s) 912, 1306, 1415, 2109
TaqI TCGA 7 cut(s) 164, 254, 491, 546, 967, 985, 2061
TatI WGTACW 3 cut(s) 689, 765, 1589
TauI GCSGC 1 cut(s) 1103
TfiI GAWTC 3 cut(s) 263, 274, 397
Tru1I TTAA 3 cut(s) 600, 1311, 1395
Tru9I TTAA 3 cut(s) 600, 1311, 1395
TscAI CASTG 5 cut(s) 489, 675, 1305, 1766, 2071
TseFI GTSAC 5 cut(s) 122, 869, 1130, 1568, 2090
TseI GCWGC 5 cut(s) 172, 753, 1154, 1217, 1781
Tsp45I GTSAC 5 cut(s) 122, 869, 1130, 1568, 2090
TspDTI ATGAA 5 cut(s) 21, 542, 1164, 1221, 1529
TspRI CASTG 5 cut(s) 489, 675, 1305, 1766, 2071
Vha464I CTTAAG 1 cut(s) 599
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 2 cut(s) 901, 1914
XceI RCATGY 4 cut(s) 734, 862, 984, 1186
XcmI CCANNNNNNNNNTGG 3 cut(s) 712, 1070, 1915
XmaJI CCTAGG 2 cut(s) 407, 419
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 1645
XspI CTAG 8 cut(s) 228, 408, 420, 839, 1476, 1695, 1748, 2048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.