Rmu_ssc0000311.1_g000014

SPRY domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000311.1
OG0011366
Physical Location & Seq
Reverse (-)
64270 .. 66339
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000311.1_g000014.1.cds

Sequence Viewer

Length: 720 bp
atgactatctgcctctccaaggtctacaaggccgagaaagttgaggtcagcgaggaccgaatgagtgccgggagtaccaaagggtatagaatggttagggccaccaggggagttgtggaaggtgcttggtactttgaagttagggtagtcagcttgggagagaccggccacacccgcctcggctggtccactgacaaaggtgaccttcaggctccggttggatatgatgggaatagtttcgggtatcgggacattgatgggagtaaggtgcataaggctttgagggacaagtatggcgaccaagggtataaggaaggtgatgttatagggttctatataaatttgccggatggggggtcttatgccccaaaacctccgcatttggtttggtataaggggcagaggtatgctactgcacccgaagccaaggaggatgctgtcaaagtagtgcctggaagtgagatatcttttttcaaaaatggggtatgccaaggtgttgcttttaaagatctatatggtggtcgttactatcctgctgcttcaatgtatactcttccccatcaaccaaattgtgtggtcaagttcaactttggtcctgactttgaattctttccagaagacttcaatgaacgtccagtgcccaggcccatggttgaagttccttatcatgggtttgaaaaccgtgctgaaaatggagtgtccaatgagaagaacaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0002376 GO:0002520 GO:0002682 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008284 GO:0008757 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018130 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0022607 GO:0030097 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0042054 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045595 GO:0045637 GO:0045652 GO:0046483 GO:0048188 GO:0048316 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0051716 GO:0060255 GO:0060776 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1903506 GO:1903706 GO:1904837 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04212 ko04934 map04212 map04934
Pfam Domains
Protein Families
SPRY

Protein Analysis

239

Amino Acids

26.73

Weight (kDa)

6.53

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51450
fragaria_vesca FvH4_3g28490 FvH4_3g28490 FvH4_3g28490
malus_domestica MD03G1172400.v1.1 MD11G1190300.v1.1
prunus_persica Prupe.4G254200_v2.0.a1
pyrus_communis pycom03g12960 pycom11g16680
rosa_chinensis RchiOBHm_Chr5g0052831
rosa_laevigata RLG00000034789
rosa_multiflora Rmu_ssc0000311.1_g000014
rosa_roxburghii Rroxscaffold_1G00028660
rosa_rugosa Rorug05G0269300 Rorug05G0269400
rosa_samantha Rh5AG341400 Rh5BG352100 Rh5CG378800 Rh5DG368400
rosa_wichuraiana Rw5G032190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 24, 548
AciI CCGC 2 cut(s) 175, 377
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 2 cut(s) 340, 605
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 2 cut(s) 76, 131
AfiI CCNNNNNNNGG 3 cut(s) 19, 353, 668
AgsI TTSAA 8 cut(s) 137, 475, 543, 586, 605, 625, 656, 677
AjnI CCWGG 3 cut(s) 104, 451, 641
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 4 cut(s) 30, 99, 166, 644
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 2 cut(s) 340, 605
Asp700I GAANNNNTTC 2 cut(s) 236, 609
AspS9I GGNCC 5 cut(s) 55, 99, 186, 593, 645
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 212, 329
AvaII GGWCC 3 cut(s) 55, 186, 593
BaeGI GKGCMC 1 cut(s) 642
BbsI GAAGAC 1 cut(s) 624
BbvI GCAGC 1 cut(s) 523
BccI CCATC 4 cut(s) 221, 251, 344, 567
BciT130I CCWGG 3 cut(s) 106, 453, 643
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 155
BglII AGATCT 1 cut(s) 508
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
Bme1390I CCNGG 4 cut(s) 70, 106, 453, 643
Bme18I GGWCC 3 cut(s) 55, 186, 593
BmgT120I GGNCC 5 cut(s) 55, 99, 186, 593, 645
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 4 cut(s) 70, 106, 453, 643
BmsI GCATC 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 8 cut(s) 18, 105, 178, 301, 426, 490, 641, 648
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 353, 668
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 635
BseBI CCWGG 3 cut(s) 106, 453, 643
BseDI CCNNGG 8 cut(s) 18, 105, 178, 301, 426, 490, 641, 648
BseGI GGATG 2 cut(s) 355, 439
BseLI CCNNNNNNNGG 3 cut(s) 19, 353, 668
BseNI ACTGG 1 cut(s) 635
BseSI GKGCMC 1 cut(s) 642
BseXI GCAGC 1 cut(s) 523
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 4 cut(s) 32, 101, 168, 646
BsiSI CCGG 4 cut(s) 69, 165, 215, 347
BslFI GGGAC 2 cut(s) 263, 299
BslI CCNNNNNNNGG 3 cut(s) 19, 353, 668
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 263, 299
BsnI GGCC 4 cut(s) 32, 101, 168, 646
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 1 cut(s) 508
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 2 cut(s) 175, 377
BspANI GGCC 4 cut(s) 32, 101, 168, 646
BspLI GGNNCC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 635
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 8 cut(s) 18, 105, 178, 301, 426, 490, 641, 648
BssMI GATC 1 cut(s) 508
BssNAI GTATAC 1 cut(s) 549
BssT1I CCWWGG 5 cut(s) 18, 301, 426, 490, 648
Bst1107I GTATAC 1 cut(s) 549
Bst2UI CCWGG 3 cut(s) 106, 453, 643
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 1 cut(s) 558
BstDSI CCRYGG 1 cut(s) 648
BstEII GGTNACC 1 cut(s) 200
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 355, 439
BstKTI GATC 1 cut(s) 511
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 508
BstMWI GCNNNNNNNGC 2 cut(s) 174, 422
BstNI CCWGG 3 cut(s) 106, 453, 643
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 4 cut(s) 68, 104, 451, 641
BstSLI GKGCMC 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 1 cut(s) 508
BstZ17I GTATAC 1 cut(s) 549
BsuRI GGCC 4 cut(s) 32, 101, 168, 646
BtgI CCRYGG 1 cut(s) 648
BtsCI GGATG 2 cut(s) 355, 439
BtsIMutI CAGTG 2 cut(s) 189, 642
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 5 cut(s) 55, 99, 186, 593, 645
Csp6I GTAC 2 cut(s) 75, 130
CspCI CAANNNNNGTGG 2 cut(s) 555, 590
CviAII CATG 2 cut(s) 649, 668
CviJI RGCY 9 cut(s) 32, 101, 153, 168, 183, 212, 278, 425, 646
CviKI_1 RGCY 9 cut(s) 32, 101, 153, 168, 183, 212, 278, 425, 646
CviQI GTAC 2 cut(s) 75, 130
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
DraI TTTAAA 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 5 cut(s) 18, 301, 426, 490, 648
Eco31I GGTCTC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 465
Eco47I GGWCC 3 cut(s) 55, 186, 593
Eco57I CTGAAG 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 200
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 3 cut(s) 104, 451, 641
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 5 cut(s) 18, 301, 426, 490, 648
ErhI CCWWGG 5 cut(s) 18, 301, 426, 490, 648
FaeI CATG 2 cut(s) 652, 671
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 572, 604
FaqI GGGAC 2 cut(s) 263, 299
FatI CATG 2 cut(s) 648, 667
FauI CCCGC 1 cut(s) 182
FblI GTMKAC 2 cut(s) 24, 548
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 2 cut(s) 362, 446
Fsp4HI GCNGC 1 cut(s) 537
GluI GCNGC 1 cut(s) 537
HaeIII GGCC 4 cut(s) 32, 101, 168, 646
HapII CCGG 4 cut(s) 69, 165, 215, 347
Hin1II CATG 2 cut(s) 652, 671
HpaII CCGG 4 cut(s) 69, 165, 215, 347
HphI GGTGA 2 cut(s) 212, 329
Hpy166II GTNNAC 3 cut(s) 25, 189, 549
Hpy188III TCNNGA 3 cut(s) 248, 596, 614
Hpy8I GTNNAC 3 cut(s) 25, 189, 549
HpyAV CCTTC 3 cut(s) 113, 215, 308
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 2 cut(s) 271, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 422
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 2 cut(s) 652, 671
Kzo9I GATC 1 cut(s) 508
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 1 cut(s) 424
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 2 cut(s) 200, 524
MalI GATC 1 cut(s) 510
MboI GATC 1 cut(s) 508
MboII GAAGA 2 cut(s) 545, 629
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 4 cut(s) 340, 568, 605, 715
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 8 cut(s) 23, 37, 46, 188, 276, 384, 396, 424
MroXI GAANNNNTTC 2 cut(s) 236, 609
MseI TTAA 1 cut(s) 504
MspI CCGG 4 cut(s) 69, 165, 215, 347
MspR9I CCNGG 4 cut(s) 70, 106, 453, 643
MvaI CCWGG 3 cut(s) 106, 453, 643
MwoI GCNNNNNNNGC 2 cut(s) 174, 422
NciI CCSGG 1 cut(s) 70
NcoI CCATGG 1 cut(s) 648
NdeII GATC 1 cut(s) 508
NlaIII CATG 2 cut(s) 652, 671
NlaIV GGNNCC 1 cut(s) 213
NmeAIII GCCGAG 2 cut(s) 58, 159
NmuCI GTSAC 1 cut(s) 200
PdmI GAANNNNTTC 2 cut(s) 236, 609
PkrI GCNGC 1 cut(s) 538
Psp6I CCWGG 3 cut(s) 104, 451, 641
PspEI GGTNACC 1 cut(s) 200
PspGI CCWGG 3 cut(s) 104, 451, 641
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 5 cut(s) 55, 99, 186, 593, 645
PsuI RGATCY 1 cut(s) 508
RsaI GTAC 2 cut(s) 76, 131
RsaNI GTAC 2 cut(s) 75, 130
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 1 cut(s) 508
Sau96I GGNCC 5 cut(s) 55, 99, 186, 593, 645
ScrFI CCNGG 4 cut(s) 70, 106, 453, 643
SduI GDGCHC 1 cut(s) 642
SfaNI GCATC 1 cut(s) 424
SinI GGWCC 3 cut(s) 55, 186, 593
Sse9I AATT 4 cut(s) 340, 568, 605, 715
SsiI CCGC 2 cut(s) 175, 377
StyD4I CCNGG 4 cut(s) 68, 104, 451, 641
StyI CCWWGG 5 cut(s) 18, 301, 426, 490, 648
TaaI ACNGT 1 cut(s) 683
TaiI ACGT 1 cut(s) 634
TaqII GACCGA 1 cut(s) 72
TasI AATT 4 cut(s) 340, 568, 605, 715
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 2 cut(s) 196, 642
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 642
TspRI CASTG 2 cut(s) 196, 642
VpaK11BI GGWCC 3 cut(s) 55, 186, 593
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 2 cut(s) 340, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmiI GTMKAC 2 cut(s) 24, 548
XmnI GAANNNNTTC 2 cut(s) 236, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.