Rh5AG341400

SPRY domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011366
Physical Location & Seq
Reverse (-)
55768596 .. 55774771
6176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG341400.1

Sequence Viewer

Length: 1125 bp
ATGGACAATCTCCAATCCAATTACATGGACGAAGACGAGGAAGAAGACGAACAATCCAAAACCACCACCGCCGCCGCCGTCGCAATGACCGAGCTCGTTGAGCCCACGACGACAACGGAGCCCGCAAACGACGACGAGCCCAATTCGGAGCCCATGATTAACCCACCGCCCACCGACCCGCTCAACGGCAACAAAACCGAGACGGAAGCCTCTGAAGACCTCTCCGAGTCCGTCAAATCCCTCGAAAACGACGTCGACGGCGACATCGAAGACGAAGACCCGCATCCCAAGAAGCAAAAGCAGCTCTCTTCTCTCACCGCCATTGCCTCGGCGGCGGCGACCACCCCGCCCGCTTCTTCGGACCCGGACCAGGCCCAGTTACCCCAACCCGCACCCGAAGCCAACGGCAACGGCAACGGCGCTCTCCTCCTCCCGGCGCAACCGTCCAAGAAGTCCACCAAGAAGAAGAACAACAATGTGTGGGTCACCAAGTCGACCCGGAAAGGGAAGAAGAAGACCAAGCCCAGCACCAACAACAACGCCCCCGGAGAGGACAAGGTTCTCGTCACTCCGGTCACCAGATTCCCCGACAAGACCGACGACACGCCGGAGATGACTATCTGCCTCTCCAAGGTCTACAAGGCCGAGAAAGTTGAGGTCAGCGAGGACCGAATGAGTGCCGGGAGTACCAAAGGGTATAGAATGGTTAGGGCCACCAGGGGAGTTGTGGAAGGTGCTTGGTACTTTGAAATTAGGGTAGTCAGCTTGGGAGAGACCGGCCACACCCGCCTCGGCTGGTCCACTGACAAAGGTGACCTTCAGGCTCCGGTTGGATATGATGGGAATAGTTTCGGTTATCGGGACATTGATGGGAGTAAGGTGCATAAGGCTTTGAGGGACAAGTATGGCGACCAAGGGTATAAGGAAGGTGATGTTATAGGGTTCTATATAAATTTGCCGGATGGGGGGTCTTATGCCCCCAAACCTCCGCATTTGGTTTGGTATAAGGGGCAGAGGTATGCTACTGCACCCGAAGCCAAGGAGGATGCTGTCAAAGTAGTGCCTGGTGAGTGCAGTGTTAATGTTTTCTTCCAGTGTTCAAGCCTTTCATTATCTCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0002376 GO:0002520 GO:0002682 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008284 GO:0008757 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018130 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0022607 GO:0030097 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0042054 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045595 GO:0045637 GO:0045652 GO:0046483 GO:0048188 GO:0048316 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0051716 GO:0060255 GO:0060776 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1903506 GO:1903706 GO:1904837 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04212 ko04934 map04212 map04934
Pfam Domains
Protein Families
SPRY

Protein Analysis

374

Amino Acids

40.67

Weight (kDa)

4.87

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPRY PF00622 247 - 322 2.1e-09 SPRY domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51450
fragaria_vesca FvH4_3g28490 FvH4_3g28490 FvH4_3g28490
malus_domestica MD03G1172400.v1.1 MD11G1190300.v1.1
prunus_persica Prupe.4G254200_v2.0.a1
pyrus_communis pycom03g12960 pycom11g16680
rosa_chinensis RchiOBHm_Chr5g0052831
rosa_laevigata RLG00000034789
rosa_multiflora Rmu_ssc0000311.1_g000014
rosa_roxburghii Rroxscaffold_1G00028660
rosa_rugosa Rorug05G0269300 Rorug05G0269400
rosa_samantha Rh5AG341400 Rh5BG352100 Rh5CG378800 Rh5DG368400
rosa_wichuraiana Rw5G032190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 181
AccI GTMKAC 3 cut(s) 255, 494, 636
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 1 cut(s) 952
AcuI CTGAAG 2 cut(s) 234, 803
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 2 cut(s) 688, 743
AfiI CCNNNNNNNGG 7 cut(s) 185, 370, 433, 504, 550, 631, 965
AgsI TTSAA 2 cut(s) 749, 1101
AjnI CCWGG 3 cut(s) 369, 716, 1063
AluBI AGCT 3 cut(s) 94, 304, 765
AluI AGCT 3 cut(s) 94, 304, 765
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 194, 767
AoxI GGCC 4 cut(s) 372, 642, 711, 778
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 952
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
Asp700I GAANNNNTTC 1 cut(s) 848
AspLEI GCGC 2 cut(s) 422, 439
AspS9I GGNCC 6 cut(s) 361, 367, 373, 667, 711, 798
AsuC2I CCSGG 5 cut(s) 365, 434, 499, 546, 682
AsuHPI GGTGA 6 cut(s) 307, 478, 568, 824, 941, 1079
AvaII GGWCC 4 cut(s) 361, 367, 667, 798
BanII GRGCYC 5 cut(s) 96, 105, 123, 141, 153
BbsI GAAGAC 6 cut(s) 39, 51, 222, 276, 282, 521
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 313
BccI CCATC 3 cut(s) 833, 863, 956
BceAI ACGGC 6 cut(s) 62, 202, 274, 421, 427, 433
BciT130I CCWGG 3 cut(s) 371, 718, 1065
BcnI CCSGG 5 cut(s) 365, 434, 499, 546, 682
BcoDI GTCTC 2 cut(s) 194, 767
BfoI RGCGCY 1 cut(s) 423
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 5 cut(s) 72, 75, 302, 333, 336
BlsI GCNGC 5 cut(s) 73, 76, 303, 334, 337
Bme1390I CCNGG 8 cut(s) 365, 371, 434, 499, 546, 682, 718, 1065
Bme18I GGWCC 4 cut(s) 361, 367, 667, 798
BmgT120I GGNCC 6 cut(s) 361, 367, 373, 667, 711, 798
BmiI GGNNCC 4 cut(s) 120, 150, 363, 825
BmrFI CCNGG 8 cut(s) 365, 371, 434, 499, 546, 682, 718, 1065
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 2 cut(s) 292, 1036
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 6 cut(s) 39, 51, 222, 276, 282, 521
BpuMI CCSGG 5 cut(s) 365, 434, 499, 546, 682
BsaBI GATNNNNATC 1 cut(s) 617
BsaHI GRCGYC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 7 cut(s) 327, 544, 630, 717, 790, 913, 1038
BsaWI WCCGGW 2 cut(s) 571, 826
Bsc4I CCNNNNNNNGG 7 cut(s) 185, 370, 433, 504, 550, 631, 965
Bse118I RCCGGY 1 cut(s) 776
Bse1I ACTGG 2 cut(s) 376, 1093
Bse3DI GCAATG 2 cut(s) 90, 321
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 3 cut(s) 371, 718, 1065
BseDI CCNNGG 7 cut(s) 327, 544, 630, 717, 790, 913, 1038
BseGI GGATG 3 cut(s) 283, 967, 1051
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 7 cut(s) 185, 370, 433, 504, 550, 631, 965
BseMI GCAATG 2 cut(s) 90, 321
BseNI ACTGG 2 cut(s) 376, 1093
BseRI GAGGAG 2 cut(s) 416, 419
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 524
BsgI GTGCAG 2 cut(s) 1011, 1093
BshFI GGCC 4 cut(s) 374, 644, 713, 780
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 2 cut(s) 875, 911
BslI CCNNNNNNNGG 7 cut(s) 185, 370, 433, 504, 550, 631, 965
BsmAI GTCTC 2 cut(s) 194, 767
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 875, 911
BsnI GGCC 4 cut(s) 374, 644, 713, 780
Bso31I GGTCTC 1 cut(s) 767
Bsp1286I GDGCHC 5 cut(s) 96, 105, 123, 141, 153
BspANI GGCC 4 cut(s) 374, 644, 713, 780
BspLI GGNNCC 4 cut(s) 120, 150, 363, 825
BspTNI GGTCTC 1 cut(s) 767
BsrBI CCGCTC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 90, 321
BsrFI RCCGGY 1 cut(s) 776
BsrI ACTGG 2 cut(s) 376, 1093
BssAI RCCGGY 1 cut(s) 776
BssECI CCNNGG 7 cut(s) 327, 544, 630, 717, 790, 913, 1038
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 3 cut(s) 630, 913, 1038
Bst2UI CCWGG 3 cut(s) 371, 718, 1065
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 313
BstACI GRCGYC 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 123, 351
BstEII GGTNACC 3 cut(s) 484, 574, 812
BstENI CCTNNNNNAGG 1 cut(s) 629
BstF5I GGATG 3 cut(s) 283, 967, 1051
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 2 cut(s) 422, 439
BstMAI GTCTC 2 cut(s) 194, 767
BstMWI GCNNNNNNNGC 7 cut(s) 80, 100, 301, 332, 398, 786, 1034
BstNI CCWGG 3 cut(s) 371, 718, 1065
BstPI GGTNACC 3 cut(s) 484, 574, 812
BstSCI CCNGG 8 cut(s) 363, 369, 432, 497, 544, 680, 716, 1063
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 6 cut(s) 39, 51, 222, 276, 282, 521
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 4 cut(s) 374, 644, 713, 780
BtsCI GGATG 3 cut(s) 283, 967, 1051
BtsI GCAGTG 1 cut(s) 1081
BtsIMutI CAGTG 3 cut(s) 801, 1081, 1100
Cac8I GCNNGC 2 cut(s) 123, 351
CfoI GCGC 2 cut(s) 422, 439
Cfr10I RCCGGY 1 cut(s) 776
Cfr13I GGNCC 6 cut(s) 361, 367, 373, 667, 711, 798
Csp6I GTAC 2 cut(s) 687, 742
CviAII CATG 2 cut(s) 25, 154
CviQI GTAC 2 cut(s) 687, 742
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 3 cut(s) 630, 913, 1038
Eco24I GRGCYC 5 cut(s) 96, 105, 123, 141, 153
Eco31I GGTCTC 1 cut(s) 767
Eco47I GGWCC 4 cut(s) 361, 367, 667, 798
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 234, 803
Eco91I GGTNACC 3 cut(s) 484, 574, 812
EcoICRI GAGCTC 1 cut(s) 94
EcoNI CCTNNNNNAGG 1 cut(s) 629
EcoO65I GGTNACC 3 cut(s) 484, 574, 812
EcoRII CCWGG 3 cut(s) 369, 716, 1063
EcoT14I CCWWGG 3 cut(s) 630, 913, 1038
EcoT38I GRGCYC 5 cut(s) 96, 105, 123, 141, 153
ErhI CCWWGG 3 cut(s) 630, 913, 1038
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 2 cut(s) 28, 157
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 2 cut(s) 875, 911
FatI CATG 2 cut(s) 24, 153
FauI CCCGC 7 cut(s) 130, 186, 288, 354, 358, 397, 794
FblI GTMKAC 3 cut(s) 255, 494, 636
Fnu4HI GCNGC 5 cut(s) 72, 75, 302, 333, 336
FokI GGATG 3 cut(s) 270, 974, 1058
FriOI GRGCYC 5 cut(s) 96, 105, 123, 141, 153
Fsp4HI GCNGC 5 cut(s) 72, 75, 302, 333, 336
GlaI GCGC 2 cut(s) 421, 438
GluI GCNGC 5 cut(s) 72, 75, 302, 333, 336
GsaI CCCAGC 1 cut(s) 528
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 4 cut(s) 374, 644, 713, 780
HhaI GCGC 2 cut(s) 422, 439
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 2 cut(s) 28, 157
Hin6I GCGC 2 cut(s) 420, 437
HinP1I GCGC 2 cut(s) 420, 437
HincII GTYRAC 2 cut(s) 256, 495
HindII GTYRAC 2 cut(s) 256, 495
HinfI GANTC 2 cut(s) 227, 582
HphI GGTGA 6 cut(s) 307, 478, 568, 824, 941, 1079
Hpy166II GTNNAC 5 cut(s) 256, 456, 495, 637, 801
Hpy188I TCNGA 4 cut(s) 148, 214, 226, 361
Hpy188III TCNNGA 1 cut(s) 860
Hpy8I GTNNAC 5 cut(s) 256, 456, 495, 637, 801
Hpy99I CGWCG 8 cut(s) 83, 112, 134, 137, 254, 257, 260, 602
HpyAV CCTTC 3 cut(s) 725, 827, 920
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 883, 1028, 1074
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 100, 301, 332, 398, 786, 1034
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 28, 157
HspAI GCGC 2 cut(s) 420, 437
LmnI GCTCC 3 cut(s) 118, 148, 829
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 2 cut(s) 292, 1036
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 5 cut(s) 378, 484, 565, 574, 812
MbiI CCGCTC 1 cut(s) 181
MhlI GDGCHC 5 cut(s) 96, 105, 123, 141, 153
MluCI AATT 4 cut(s) 19, 142, 750, 952
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 848
MseI TTAA 3 cut(s) 159, 1080, 1123
MspR9I CCNGG 8 cut(s) 365, 371, 434, 499, 546, 682, 718, 1065
MvaI CCWGG 3 cut(s) 371, 718, 1065
MwoI GCNNNNNNNGC 7 cut(s) 80, 100, 301, 332, 398, 786, 1034
NciI CCSGG 5 cut(s) 365, 434, 499, 546, 682
NlaIII CATG 2 cut(s) 28, 157
NlaIV GGNNCC 4 cut(s) 120, 150, 363, 825
NmeAIII GCCGAG 3 cut(s) 308, 670, 771
NmuCI GTSAC 4 cut(s) 484, 565, 574, 812
PcsI WCGNNNNNNNCGW 5 cut(s) 87, 249, 258, 264, 335
PdmI GAANNNNTTC 1 cut(s) 848
PfeI GAWTC 1 cut(s) 582
PkrI GCNGC 5 cut(s) 73, 76, 303, 334, 337
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 3 cut(s) 369, 716, 1063
PspEI GGTNACC 3 cut(s) 484, 574, 812
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 3 cut(s) 369, 716, 1063
PspN4I GGNNCC 4 cut(s) 120, 150, 363, 825
PspPI GGNCC 6 cut(s) 361, 367, 373, 667, 711, 798
RsaI GTAC 2 cut(s) 688, 743
RsaNI GTAC 2 cut(s) 687, 742
SacI GAGCTC 1 cut(s) 96
SalI GTCGAC 2 cut(s) 254, 493
SaqAI TTAA 3 cut(s) 159, 1080, 1123
SatI GCNGC 5 cut(s) 72, 75, 302, 333, 336
Sau96I GGNCC 6 cut(s) 361, 367, 373, 667, 711, 798
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 8 cut(s) 365, 371, 434, 499, 546, 682, 718, 1065
SduI GDGCHC 5 cut(s) 96, 105, 123, 141, 153
SfaNI GCATC 2 cut(s) 292, 1036
SgrDI CGTCGACG 1 cut(s) 254
SinI GGWCC 4 cut(s) 361, 367, 667, 798
Sse9I AATT 4 cut(s) 19, 142, 750, 952
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 8 cut(s) 363, 369, 432, 497, 544, 680, 716, 1063
StyI CCWWGG 3 cut(s) 630, 913, 1038
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 1 cut(s) 255
TaqI TCGA 4 cut(s) 243, 255, 267, 494
TaqII GACCGA 3 cut(s) 104, 611, 684
TasI AATT 4 cut(s) 19, 142, 750, 952
TauI GCSGC 4 cut(s) 74, 77, 335, 338
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 3 cut(s) 159, 1080, 1123
Tru9I TTAA 3 cut(s) 159, 1080, 1123
TscAI CASTG 3 cut(s) 808, 1081, 1100
TseFI GTSAC 4 cut(s) 484, 565, 574, 812
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 4 cut(s) 484, 565, 574, 812
TspDTI ATGAA 1 cut(s) 1098
TspGWI ACGGA 3 cut(s) 131, 218, 220
TspRI CASTG 3 cut(s) 808, 1081, 1100
VpaK11BI GGWCC 4 cut(s) 361, 367, 667, 798
XagI CCTNNNNNAGG 1 cut(s) 629
XapI RAATTY 1 cut(s) 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmiI GTMKAC 3 cut(s) 255, 494, 636
XmnI GAANNNNTTC 1 cut(s) 848
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.