Rh5DG368400

SPRY domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011366
Physical Location & Seq
Reverse (-)
55228322 .. 55233278
4957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG368400.1

Sequence Viewer

Length: 1113 bp
ATGGACAATCTCCAATCCAATTACATGGACGAAGACGAGGAAGAAGACGAACAATCCAAAACCGCCGCCGCCGCCGTCGCAATGACCGAGCTCGTTGAGCCCGCGACGACAGCGGAGCCCGCAAACGACGACGAGCCCAATTCGGAGCCCATAATGAACCCACCGCCCACCGACCCGCTCAACGAGACGGAAGCCTCCGAAGACCTCTCCGAGTCCGTCAAATCCCTCGAAAACGACGTCGACGGCGACATCGAAGACGAAGACCCGCATCCCAAGAAGCAAAAGCAGCTCTCTTCTCTCACCGCCATTGCCTCGGCGGCGGCGGCGACCACCCCGCCCGCTTCTTCGGACCCGGACCAGGCCCAGTTGCCCCAACCCGCACCCGAAGCCAACGGCAACGGCAACGGCGCTCTCCTCCTCCCGGCGCAACCCTCCAAGAAGTCCACCAAGAAGAAGAACAACAATGTGTGGGTCACCAAGTCGACCCGGAAAGGGAAGAAGAAGACCAAGCCCAGCACCAACAACAATGCCCCCGGAGAGGACAAGGTTCTCGTCACTCCGGTCACCAGATTCCCCGACAAGACCGACGACACGCCGGAGATGACTATCTGCCTCTCCAAGGTCTACAAGGCCGAGAAAGTTGAGGTCAGCGAGGACCGAATGAGTGCCGGGAGTACCAAAGGGTATAGAATGGTTAGGGCCACCAGGGGAGTAGTGGAAGGTGCTTGGTACTTTGAAATTAGGGTAGTCAGCTTGGGAGAGACCGGCCACACTCGCCTCGGCTGGTCCACTGACAAAGGTGACCTTCAGGCTCCGGTTGGATATGATGGGAATAGTTTCGGTTATCGGGACATTGATGGGAGTAAGGTGCATAAGGCTTTGAGGGACAAGTATGGCGACGAAGGGTATAAGGAAGGTGATGTTATAGGGTTCTATATAAATTTGCCGGATGGGGGTTCTTATGCCCCCAAACCTCCGCATTTGGTTTGGTATAAGGGGCAGAGGTATGCTACCGCACCCGAAGCCAAGGAGGATGCTGTCAAAGTAGTGCCTGGTGAGTGCAGTGTTAATGTTTTCTTCCAGTGTTCAAGCCTTTCATTATCTCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0002376 GO:0002520 GO:0002682 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008284 GO:0008757 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018130 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0022607 GO:0030097 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0042054 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045595 GO:0045637 GO:0045652 GO:0046483 GO:0048188 GO:0048316 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0051716 GO:0060255 GO:0060776 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1903506 GO:1903706 GO:1904837 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04212 ko04934 map04212 map04934
Pfam Domains
Protein Families
SPRY

Protein Analysis

370

Amino Acids

40.15

Weight (kDa)

4.8

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPRY PF00622 243 - 318 2.6e-09 SPRY domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51450
fragaria_vesca FvH4_3g28490 FvH4_3g28490 FvH4_3g28490
malus_domestica MD03G1172400.v1.1 MD11G1190300.v1.1
prunus_persica Prupe.4G254200_v2.0.a1
pyrus_communis pycom03g12960 pycom11g16680
rosa_chinensis RchiOBHm_Chr5g0052831
rosa_laevigata RLG00000034789
rosa_multiflora Rmu_ssc0000311.1_g000014
rosa_roxburghii Rroxscaffold_1G00028660
rosa_rugosa Rorug05G0269300 Rorug05G0269400
rosa_samantha Rh5AG341400 Rh5BG352100 Rh5CG378800 Rh5DG368400
rosa_wichuraiana Rw5G032190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 3 cut(s) 240, 482, 624
AccII CGCG 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 1 cut(s) 940
AcuI CTGAAG 1 cut(s) 791
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 676, 731
AfiI CCNNNNNNNGG 6 cut(s) 358, 421, 492, 538, 619, 953
AgsI TTSAA 2 cut(s) 737, 1089
AjnI CCWGG 3 cut(s) 357, 704, 1051
AluBI AGCT 3 cut(s) 91, 289, 753
AluI AGCT 3 cut(s) 91, 289, 753
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 179, 755
AoxI GGCC 4 cut(s) 360, 630, 699, 766
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 1 cut(s) 940
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
Asp700I GAANNNNTTC 1 cut(s) 836
AspLEI GCGC 2 cut(s) 410, 427
AspS9I GGNCC 6 cut(s) 349, 355, 361, 655, 699, 786
AsuC2I CCSGG 5 cut(s) 353, 422, 487, 534, 670
AsuHPI GGTGA 6 cut(s) 292, 466, 556, 812, 929, 1067
AvaII GGWCC 4 cut(s) 349, 355, 655, 786
BanII GRGCYC 5 cut(s) 93, 102, 120, 138, 150
BbsI GAAGAC 6 cut(s) 39, 51, 207, 261, 267, 509
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 298
BccI CCATC 3 cut(s) 821, 851, 944
BceAI ACGGC 5 cut(s) 59, 259, 409, 415, 421
BciT130I CCWGG 3 cut(s) 359, 706, 1053
BcnI CCSGG 5 cut(s) 353, 422, 487, 534, 670
BcoDI GTCTC 2 cut(s) 179, 755
BfoI RGCGCY 1 cut(s) 411
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 7 cut(s) 66, 69, 72, 287, 318, 321, 324
BlsI GCNGC 7 cut(s) 67, 70, 73, 288, 319, 322, 325
Bme1390I CCNGG 8 cut(s) 353, 359, 422, 487, 534, 670, 706, 1053
Bme18I GGWCC 4 cut(s) 349, 355, 655, 786
BmgT120I GGNCC 6 cut(s) 349, 355, 361, 655, 699, 786
BmiI GGNNCC 4 cut(s) 117, 147, 351, 813
BmrFI CCNGG 8 cut(s) 353, 359, 422, 487, 534, 670, 706, 1053
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 2 cut(s) 277, 1024
BmuI ACTGGG 1 cut(s) 358
BpiI GAAGAC 6 cut(s) 39, 51, 207, 261, 267, 509
BpuMI CCSGG 5 cut(s) 353, 422, 487, 534, 670
BsaBI GATNNNNATC 1 cut(s) 605
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 755
BsaJI CCNNGG 6 cut(s) 312, 532, 618, 705, 778, 1026
BsaWI WCCGGW 2 cut(s) 559, 814
Bsc4I CCNNNNNNNGG 6 cut(s) 358, 421, 492, 538, 619, 953
Bse118I RCCGGY 1 cut(s) 764
Bse1I ACTGG 2 cut(s) 364, 1081
Bse3DI GCAATG 2 cut(s) 87, 306
Bse8I GATNNNNATC 1 cut(s) 605
BseBI CCWGG 3 cut(s) 359, 706, 1053
BseDI CCNNGG 6 cut(s) 312, 532, 618, 705, 778, 1026
BseGI GGATG 3 cut(s) 268, 955, 1039
BseJI GATNNNNATC 1 cut(s) 605
BseLI CCNNNNNNNGG 6 cut(s) 358, 421, 492, 538, 619, 953
BseMI GCAATG 2 cut(s) 87, 306
BseNI ACTGG 2 cut(s) 364, 1081
BseRI GAGGAG 2 cut(s) 404, 407
BseXI GCAGC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 512
BsgI GTGCAG 1 cut(s) 1081
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 4 cut(s) 362, 632, 701, 768
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 2 cut(s) 863, 899
BslI CCNNNNNNNGG 6 cut(s) 358, 421, 492, 538, 619, 953
BsmAI GTCTC 2 cut(s) 179, 755
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 863, 899
BsnI GGCC 4 cut(s) 362, 632, 701, 768
Bso31I GGTCTC 1 cut(s) 755
Bsp1286I GDGCHC 5 cut(s) 93, 102, 120, 138, 150
BspANI GGCC 4 cut(s) 362, 632, 701, 768
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 4 cut(s) 117, 147, 351, 813
BspTNI GGTCTC 1 cut(s) 755
BsrBI CCGCTC 1 cut(s) 178
BsrDI GCAATG 2 cut(s) 87, 306
BsrFI RCCGGY 1 cut(s) 764
BsrI ACTGG 2 cut(s) 364, 1081
BssAI RCCGGY 1 cut(s) 764
BssECI CCNNGG 6 cut(s) 312, 532, 618, 705, 778, 1026
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 618, 1026
Bst2UI CCWGG 3 cut(s) 359, 706, 1053
Bst6I CTCTTC 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 3 cut(s) 102, 120, 339
BstEII GGTNACC 3 cut(s) 472, 562, 800
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 3 cut(s) 268, 955, 1039
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 2 cut(s) 410, 427
BstMAI GTCTC 2 cut(s) 179, 755
BstNI CCWGG 3 cut(s) 359, 706, 1053
BstPI GGTNACC 3 cut(s) 472, 562, 800
BstSCI CCNGG 8 cut(s) 351, 357, 420, 485, 532, 668, 704, 1051
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 6 cut(s) 39, 51, 207, 261, 267, 509
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 4 cut(s) 362, 632, 701, 768
BtsCI GGATG 3 cut(s) 268, 955, 1039
BtsI GCAGTG 1 cut(s) 1069
BtsIMutI CAGTG 3 cut(s) 789, 1069, 1088
Cac8I GCNNGC 3 cut(s) 102, 120, 339
CfoI GCGC 2 cut(s) 410, 427
Cfr10I RCCGGY 1 cut(s) 764
Cfr13I GGNCC 6 cut(s) 349, 355, 361, 655, 699, 786
Csp6I GTAC 2 cut(s) 675, 730
CviAII CATG 1 cut(s) 25
CviQI GTAC 2 cut(s) 675, 730
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 618, 1026
Eco24I GRGCYC 5 cut(s) 93, 102, 120, 138, 150
Eco31I GGTCTC 1 cut(s) 755
Eco47I GGWCC 4 cut(s) 349, 355, 655, 786
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 791
Eco91I GGTNACC 3 cut(s) 472, 562, 800
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoO65I GGTNACC 3 cut(s) 472, 562, 800
EcoRII CCWGG 3 cut(s) 357, 704, 1051
EcoT14I CCWWGG 2 cut(s) 618, 1026
EcoT38I GRGCYC 5 cut(s) 93, 102, 120, 138, 150
ErhI CCWWGG 2 cut(s) 618, 1026
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 1 cut(s) 28
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 2 cut(s) 863, 899
FatI CATG 1 cut(s) 24
FauI CCCGC 7 cut(s) 109, 127, 183, 273, 342, 346, 385
FblI GTMKAC 3 cut(s) 240, 482, 624
Fnu4HI GCNGC 7 cut(s) 66, 69, 72, 287, 318, 321, 324
FokI GGATG 3 cut(s) 255, 962, 1046
FriOI GRGCYC 5 cut(s) 93, 102, 120, 138, 150
Fsp4HI GCNGC 7 cut(s) 66, 69, 72, 287, 318, 321, 324
GlaI GCGC 2 cut(s) 409, 426
GluI GCNGC 7 cut(s) 66, 69, 72, 287, 318, 321, 324
GsaI CCCAGC 1 cut(s) 516
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 4 cut(s) 362, 632, 701, 768
HhaI GCGC 2 cut(s) 410, 427
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 2 cut(s) 408, 425
HinP1I GCGC 2 cut(s) 408, 425
HincII GTYRAC 2 cut(s) 241, 483
HindII GTYRAC 2 cut(s) 241, 483
HinfI GANTC 2 cut(s) 212, 570
HphI GGTGA 6 cut(s) 292, 466, 556, 812, 929, 1067
Hpy166II GTNNAC 5 cut(s) 241, 444, 483, 625, 789
Hpy188I TCNGA 4 cut(s) 145, 199, 211, 349
Hpy188III TCNNGA 1 cut(s) 848
Hpy8I GTNNAC 5 cut(s) 241, 444, 483, 625, 789
Hpy99I CGWCG 9 cut(s) 80, 109, 131, 134, 239, 242, 245, 590, 902
HpyAV CCTTC 4 cut(s) 713, 815, 896, 908
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 871, 1062
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 2 cut(s) 408, 425
LmnI GCTCC 3 cut(s) 115, 145, 817
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 2 cut(s) 277, 1024
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 472, 553, 562, 800
MbiI CCGCTC 1 cut(s) 178
MhlI GDGCHC 5 cut(s) 93, 102, 120, 138, 150
MluCI AATT 4 cut(s) 19, 139, 738, 940
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 799
MroXI GAANNNNTTC 1 cut(s) 836
MseI TTAA 2 cut(s) 1068, 1111
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 8 cut(s) 353, 359, 422, 487, 534, 670, 706, 1053
MvaI CCWGG 3 cut(s) 359, 706, 1053
MvnI CGCG 1 cut(s) 104
NciI CCSGG 5 cut(s) 353, 422, 487, 534, 670
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 4 cut(s) 117, 147, 351, 813
NmeAIII GCCGAG 3 cut(s) 293, 658, 759
NmuCI GTSAC 4 cut(s) 472, 553, 562, 800
PcsI WCGNNNNNNNCGW 4 cut(s) 84, 234, 243, 249
PdmI GAANNNNTTC 1 cut(s) 836
PfeI GAWTC 1 cut(s) 570
PkrI GCNGC 7 cut(s) 67, 70, 73, 288, 319, 322, 325
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 3 cut(s) 357, 704, 1051
PspEI GGTNACC 3 cut(s) 472, 562, 800
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 3 cut(s) 357, 704, 1051
PspN4I GGNNCC 4 cut(s) 117, 147, 351, 813
PspPI GGNCC 6 cut(s) 349, 355, 361, 655, 699, 786
RsaI GTAC 2 cut(s) 676, 731
RsaNI GTAC 2 cut(s) 675, 730
SacI GAGCTC 1 cut(s) 93
SalI GTCGAC 2 cut(s) 239, 481
SaqAI TTAA 2 cut(s) 1068, 1111
SatI GCNGC 7 cut(s) 66, 69, 72, 287, 318, 321, 324
Sau96I GGNCC 6 cut(s) 349, 355, 361, 655, 699, 786
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 8 cut(s) 353, 359, 422, 487, 534, 670, 706, 1053
SduI GDGCHC 5 cut(s) 93, 102, 120, 138, 150
SfaNI GCATC 2 cut(s) 277, 1024
SgrDI CGTCGACG 1 cut(s) 239
SinI GGWCC 4 cut(s) 349, 355, 655, 786
Sse9I AATT 4 cut(s) 19, 139, 738, 940
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 8 cut(s) 351, 357, 420, 485, 532, 668, 704, 1051
StyI CCWWGG 2 cut(s) 618, 1026
TaiI ACGT 1 cut(s) 240
TaqI TCGA 4 cut(s) 228, 240, 252, 482
TaqII GACCGA 3 cut(s) 101, 599, 672
TasI AATT 4 cut(s) 19, 139, 738, 940
TauI GCSGC 6 cut(s) 68, 71, 74, 320, 323, 326
TfiI GAWTC 1 cut(s) 570
Tru1I TTAA 2 cut(s) 1068, 1111
Tru9I TTAA 2 cut(s) 1068, 1111
TscAI CASTG 3 cut(s) 796, 1069, 1088
TseFI GTSAC 4 cut(s) 472, 553, 562, 800
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 4 cut(s) 472, 553, 562, 800
TspDTI ATGAA 2 cut(s) 170, 1086
TspGWI ACGGA 2 cut(s) 203, 205
TspRI CASTG 3 cut(s) 796, 1069, 1088
VpaK11BI GGWCC 4 cut(s) 349, 355, 655, 786
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 1 cut(s) 940
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XmiI GTMKAC 3 cut(s) 240, 482, 624
XmnI GAANNNNTTC 1 cut(s) 836
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.