Rorug05G0269300

SPRY domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011366
Physical Location & Seq
Forward (+)
30373865 .. 30376187
2323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0269300.1

Sequence Viewer

Length: 831 bp
ATGCCTGGCCCTCCTGGAGTCTCCTCTTCAACTGATGCTAATGCATCTCATGTACGTCTTTACAGGCTACAGCGCGGAATGACAAATGCAATTATTCAGGACGTTAGTTTCAGTGACGACAGCAACTGGATCTTGGTGTCACAACTAGATCGGCAGTTTGTTGGCCACCTAATTCAAGTTCACAAATGCCTAATCAGCAGAGCCGTGTTCATCTGGTCCCCCAGTTACACTTCCTGTTTGACTATCTTCGGACTTACAGTGTTCCAACAAAGAAGGGTTGCTGCTATGAATAGCAATATCAGTGGCCAACTTCTTCAGAGGTCTGTGATATCTGAAAATGGCAGGCTTTCATGCACAAGCAGTTCAAACTCACCTGATACCATGACTGACAGAGGTGTGCAGATATTCTTTGGTTCTACTGGGAGGGTAACAGTGTTAATACAATGGATGAGGGGGACATGCAACAATAACCAGATACTTTCACACAACCGCTTTGATGATGATGGCCGTCTCAAGAGAACCGGAACTCTCTGGACCGCATCAGCACACATTATCACTGCGGTGATTGGATCTGGAATCCTGTCCTTGGCTTGGGTCATAGCTCAGCTTGGATGGATTGCAGGTCCTATTGTCATGCTCTTGTTTTCTGGAGTGACTTACTACACGTCAACTCTGCTCTGTGCTTGCTATCGCTCCGGAGACACTGGACAGAGGAACTACACATACATGCAGGCTGTTCAATCTACCCTCGGAGGAGCCAAGGTCAAGACAAGAGTTGTTCAGTACTTGAACCTAGTTGGATGTGCCATTGGAATATTGGATACACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0002376 GO:0002520 GO:0002682 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008284 GO:0008757 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018130 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0022607 GO:0030097 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0034968 GO:0035097 GO:0036211 GO:0042054 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044666 GO:0045595 GO:0045637 GO:0045652 GO:0046483 GO:0048188 GO:0048316 GO:0048366 GO:0048367 GO:0048513 GO:0048518 GO:0048522 GO:0048534 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0051716 GO:0060255 GO:0060776 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:0140096 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1903506 GO:1903706 GO:1904837 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04212 ko04934 map04212 map04934
Pfam Domains
Protein Families
SPRY

Protein Analysis

276

Amino Acids

30.24

Weight (kDa)

9.47

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 173 - 271 1.1e-25 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51450
fragaria_vesca FvH4_3g28490 FvH4_3g28490 FvH4_3g28490
malus_domestica MD03G1172400.v1.1 MD11G1190300.v1.1
prunus_persica Prupe.4G254200_v2.0.a1
pyrus_communis pycom03g12960 pycom11g16680
rosa_chinensis RchiOBHm_Chr5g0052831
rosa_laevigata RLG00000034789
rosa_multiflora Rmu_ssc0000311.1_g000014
rosa_roxburghii Rroxscaffold_1G00028660
rosa_rugosa Rorug05G0269300 Rorug05G0269400
rosa_samantha Rh5AG341400 Rh5BG352100 Rh5CG378800 Rh5DG368400
rosa_wichuraiana Rw5G032190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 611
AccII CGCG 1 cut(s) 75
AccIII TCCGGA 1 cut(s) 695
AciI CCGC 4 cut(s) 75, 490, 537, 560
AclWI GGATC 2 cut(s) 137, 577
AcoI YGGCCR 3 cut(s) 163, 304, 505
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 54, 785
AfiI CCNNNNNNNGG 2 cut(s) 586, 591
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 5 cut(s) 30, 176, 366, 740, 790
AjiI CACGTC 1 cut(s) 666
AjnI CCWGG 2 cut(s) 4, 13
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 2 cut(s) 602, 607
AluI AGCT 2 cut(s) 602, 607
Alw26I GTCTC 3 cut(s) 25, 515, 693
AlwI GGATC 2 cut(s) 137, 577
AlwNI CAGNNNCTG 1 cut(s) 126
Aor13HI TCCGGA 1 cut(s) 695
AoxI GGCC 4 cut(s) 7, 163, 304, 505
ApeKI GCWGC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 8, 216, 534, 623
AsuHPI GGTGA 2 cut(s) 363, 574
AvaII GGWCC 3 cut(s) 216, 534, 623
BalI TGGCCA 2 cut(s) 165, 306
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 497, 606
BceAI ACGGC 2 cut(s) 188, 492
BciT130I CCWGG 2 cut(s) 6, 15
BciVI GTATCC 1 cut(s) 814
BcoDI GTCTC 3 cut(s) 25, 515, 693
BfaI CTAG 2 cut(s) 146, 794
BfmI CTRYAG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 611
BfuI GTATCC 1 cut(s) 814
BisI GCNGC 1 cut(s) 282
BlpI GCTNAGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 283
BmcAI AGTACT 1 cut(s) 785
Bme1390I CCNGG 2 cut(s) 6, 15
Bme18I GGWCC 3 cut(s) 216, 534, 623
BmgBI CACGTC 1 cut(s) 666
BmgT120I GGNCC 4 cut(s) 8, 216, 534, 623
BmiI GGNNCC 2 cut(s) 218, 757
BmrFI CCNGG 2 cut(s) 6, 15
BmrI ACTGGG 2 cut(s) 216, 429
BmsI GCATC 3 cut(s) 25, 53, 548
BmuI ACTGGG 2 cut(s) 216, 429
BpmI CTGGAG 2 cut(s) 36, 669
Bpu1102I GCTNAGC 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 585, 748, 759
BsaWI WCCGGW 2 cut(s) 521, 695
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 2 cut(s) 586, 591
Bse1I ACTGG 4 cut(s) 131, 222, 424, 709
BseAI TCCGGA 1 cut(s) 695
BseBI CCWGG 2 cut(s) 6, 15
BseDI CCNNGG 3 cut(s) 585, 748, 759
BseGI GGATG 3 cut(s) 453, 617, 806
BseLI CCNNNNNNNGG 2 cut(s) 586, 591
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 4 cut(s) 131, 222, 424, 709
BseRI GAGGAG 2 cut(s) 13, 768
BseXI GCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 4 cut(s) 9, 165, 306, 507
BsiSI CCGG 2 cut(s) 522, 696
BslFI GGGAC 2 cut(s) 202, 469
BslI CCNNNNNNNGG 2 cut(s) 586, 591
BsmAI GTCTC 3 cut(s) 25, 515, 693
BsmBI CGTCTC 1 cut(s) 515
BsmFI GGGAC 2 cut(s) 202, 469
BsnI GGCC 4 cut(s) 9, 165, 306, 507
Bsp13I TCCGGA 1 cut(s) 695
Bsp143I GATC 3 cut(s) 129, 148, 569
Bsp1720I GCTNAGC 1 cut(s) 603
BspACI CCGC 4 cut(s) 75, 490, 537, 560
BspANI GGCC 4 cut(s) 9, 165, 306, 507
BspCNI CTCAG 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 695
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 218, 757
BspMI ACCTGC 1 cut(s) 611
BspPI GGATC 2 cut(s) 137, 577
BsrI ACTGG 4 cut(s) 131, 222, 424, 709
BssECI CCNNGG 3 cut(s) 585, 748, 759
BssMI GATC 3 cut(s) 129, 148, 569
BssT1I CCWWGG 2 cut(s) 585, 759
Bst2UI CCWGG 2 cut(s) 6, 15
Bst4CI ACNGT 2 cut(s) 259, 433
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 344, 685, 732
BstDEI CTNAG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 453, 617, 806
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 132, 151, 572
BstMAI GTCTC 3 cut(s) 25, 515, 693
BstMBI GATC 3 cut(s) 129, 148, 569
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNI CCWGG 2 cut(s) 6, 15
BstNSI RCATGY 2 cut(s) 462, 730
BstSCI CCNGG 2 cut(s) 4, 13
BstSFI CTRYAG 1 cut(s) 68
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 129, 569
BstYI RGATCY 2 cut(s) 129, 569
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 4 cut(s) 9, 165, 306, 507
BtrI CACGTC 1 cut(s) 666
BtsCI GGATG 3 cut(s) 453, 617, 806
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 6 cut(s) 118, 264, 307, 438, 555, 702
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 3 cut(s) 344, 685, 732
CaiI CAGNNNCTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 4 cut(s) 8, 216, 534, 623
Csp6I GTAC 2 cut(s) 53, 784
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 6 cut(s) 50, 351, 382, 459, 634, 727
CviQI GTAC 2 cut(s) 53, 784
DdeI CTNAG 1 cut(s) 603
DpnI GATC 3 cut(s) 131, 150, 571
DpnII GATC 3 cut(s) 129, 148, 569
EaeI YGGCCR 3 cut(s) 163, 304, 505
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 2 cut(s) 585, 759
Eco32I GATATC 1 cut(s) 330
Eco47I GGWCC 3 cut(s) 216, 534, 623
Eco57I CTGAAG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 2 cut(s) 4, 13
EcoRV GATATC 1 cut(s) 330
EcoT14I CCWWGG 2 cut(s) 585, 759
EcoT22I ATGCAT 1 cut(s) 46
ErhI CCWWGG 2 cut(s) 585, 759
Esp3I CGTCTC 1 cut(s) 515
FaeI CATG 6 cut(s) 53, 354, 385, 462, 637, 730
FaiI YATR 9 cut(s) 51, 287, 352, 383, 460, 599, 635, 724, 728
FaqI GGGAC 2 cut(s) 202, 469
FatI CATG 6 cut(s) 49, 350, 381, 458, 633, 726
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 3 cut(s) 460, 624, 813
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 2 cut(s) 146, 794
GlaI GCGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 282
GsuI CTGGAG 2 cut(s) 36, 669
HaeIII GGCC 4 cut(s) 9, 165, 306, 507
HapII CCGG 2 cut(s) 522, 696
HhaI GCGC 1 cut(s) 75
Hin1II CATG 6 cut(s) 53, 354, 385, 462, 637, 730
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HinfI GANTC 2 cut(s) 18, 576
HpaII CCGG 2 cut(s) 522, 696
HphI GGTGA 2 cut(s) 363, 574
Hpy166II GTNNAC 2 cut(s) 181, 669
Hpy188I TCNGA 4 cut(s) 251, 318, 334, 752
Hpy188III TCNNGA 7 cut(s) 98, 514, 532, 573, 648, 696, 766
Hpy8I GTNNAC 2 cut(s) 181, 669
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 2 cut(s) 259, 433
HpyCH4IV ACGT 3 cut(s) 55, 102, 665
HpyCH4V TGCA 7 cut(s) 44, 89, 354, 400, 462, 620, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 603
HpySE526I ACGT 3 cut(s) 55, 102, 665
Hsp92II CATG 6 cut(s) 53, 354, 385, 462, 637, 730
HspAI GCGC 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 695
Kzo9I GATC 3 cut(s) 129, 148, 569
LmnI GCTCC 2 cut(s) 698, 755
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 3 cut(s) 25, 53, 548
MaeI CTAG 2 cut(s) 146, 794
MaeII ACGT 3 cut(s) 55, 102, 665
MaeIII GTNAC 5 cut(s) 113, 138, 224, 427, 652
MalI GATC 3 cut(s) 131, 150, 571
MboI GATC 3 cut(s) 129, 148, 569
MboII GAAGA 3 cut(s) 18, 238, 305
MflI RGATCY 2 cut(s) 129, 569
MlsI TGGCCA 2 cut(s) 165, 306
MluCI AATT 2 cut(s) 90, 171
MluNI TGGCCA 2 cut(s) 165, 306
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 2 cut(s) 289, 778
MnlI CCTC 9 cut(s) 21, 34, 312, 386, 417, 444, 705, 746, 758
Mox20I TGGCCA 2 cut(s) 165, 306
Mph1103I ATGCAT 1 cut(s) 46
MroI TCCGGA 1 cut(s) 695
MscI TGGCCA 2 cut(s) 165, 306
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 2 cut(s) 560, 725
Msp20I TGGCCA 2 cut(s) 165, 306
MspI CCGG 2 cut(s) 522, 696
MspR9I CCNGG 2 cut(s) 6, 15
MvaI CCWGG 2 cut(s) 6, 15
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeII GATC 3 cut(s) 129, 148, 569
NlaIII CATG 6 cut(s) 53, 354, 385, 462, 637, 730
NlaIV GGNNCC 2 cut(s) 218, 757
NmuCI GTSAC 3 cut(s) 113, 138, 652
NsiI ATGCAT 1 cut(s) 46
NspI RCATGY 2 cut(s) 462, 730
OliI CACNNNNGTG 1 cut(s) 560
PfeI GAWTC 1 cut(s) 576
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 1 cut(s) 283
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 623
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 4, 13
PspGI CCWGG 2 cut(s) 4, 13
PspN4I GGNNCC 2 cut(s) 218, 757
PspPI GGNCC 4 cut(s) 8, 216, 534, 623
PspPPI RGGWCCY 1 cut(s) 623
PsrI GAACNNNNNNTAC 2 cut(s) 707, 739
PstNI CAGNNNCTG 1 cut(s) 126
PsuI RGATCY 2 cut(s) 129, 569
RsaI GTAC 2 cut(s) 54, 785
RsaNI GTAC 2 cut(s) 53, 784
RseI CAYNNNNRTG 2 cut(s) 560, 725
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 3 cut(s) 129, 148, 569
Sau96I GGNCC 4 cut(s) 8, 216, 534, 623
ScaI AGTACT 1 cut(s) 785
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 6, 15
SfaNI GCATC 3 cut(s) 25, 53, 548
SfcI CTRYAG 1 cut(s) 68
SinI GGWCC 3 cut(s) 216, 534, 623
SmiMI CAYNNNNRTG 2 cut(s) 560, 725
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 2 cut(s) 90, 171
SsiI CCGC 4 cut(s) 75, 490, 537, 560
SspI AATATT 1 cut(s) 816
SspMI CTAG 2 cut(s) 146, 794
StyD4I CCNGG 2 cut(s) 4, 13
StyI CCWWGG 2 cut(s) 585, 759
TaaI ACNGT 2 cut(s) 259, 433
TaiI ACGT 3 cut(s) 58, 105, 668
TasI AATT 2 cut(s) 90, 171
TatI WGTACW 1 cut(s) 783
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 6 cut(s) 118, 264, 307, 438, 562, 709
TseFI GTSAC 3 cut(s) 113, 138, 652
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 3 cut(s) 113, 138, 652
TspDTI ATGAA 3 cut(s) 199, 302, 339
TspRI CASTG 6 cut(s) 118, 264, 307, 438, 562, 709
VpaK11BI GGWCC 3 cut(s) 216, 534, 623
XceI RCATGY 2 cut(s) 462, 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
XspI CTAG 2 cut(s) 146, 794
ZrmI AGTACT 1 cut(s) 785
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.