Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000386.1

Orthogroup ID

OG0015526

Physical Location & Seq

Genomic Coordinates Forward (+)

248410 .. 249654

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgtatatgcatcattgttctcaggtagaactgttctgtgtgaatcacttgattaattgctcattggagtccacggaggaatttatttctatggaattccgtttcactttaagagacaatgggatgcgtgccgctttccaattgcttcacatggtacttgagcatagtgtctggctggatgatgcatttgatagagcaagacaattatatttgtcatattatcgctccatccctaaaagcttggagcgctcaactgcttacaaactcatgttggcaatgttggacggggatgagcgttttgtagaacctacaccaacatcattgcaaaatttaactttgcaatctgtgaaggatgcagtgatgaaccaatttgttggcaataacatggaggtaagtgttgttggggacttctcggaggaggaaatcgagtcttgtattcttgattacttgggaacagtacaatcagcaaaaatttttgagactgagcagaagtataatccggttgtgtttcgaccatcttctgatttgcagtctcagcaagtgttcttgaaagatacagatgagagagcatgtgcatatattgcaggtcctgcaccaaatcgttggggttttactgttgacggtgaagacctgtttgagtcgatcactgatatttcttctagtgatgatgcgcagctgaaatctgcagagctagttgtggagggtaaggatattcagagggatctgcaaagaaaactccgtggtcatccgcttttctttggcatcacaatggggctcctggctgagattataaattccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C

Protein Analysis

267

Amino Acids

30.53

Weight (kDa)

4.71

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16_C	PF05193	110 - 201	1e-10	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27332 FvH4_1g27333 FvH4_1g28270 FvH4_7g00590 FvH4_7g00733 FvH4_7g00770 FvH4_7g01530 FvH4_7g01540 FvH4_7g01860 FvH4_7g01860 FvH4_7g01860 FvH4_7g02670 FvH4_7g05200 FvH4_7g05210
rosa_multiflora	Rmu_ssc0000386.1_g000045
rosa_rugosa	Rorug04G0069800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
Acc16I	TGCGCA	1 cut(s)	672
Acc36I	ACCTGC	1 cut(s)	575
AciI	CCGC	2 cut(s)	132, 749
AclWI	GGATC	1 cut(s)	729
AcsI	RAATTY	5 cut(s)	80, 95, 328, 471, 793
AfaI	GTAC	2 cut(s)	156, 459
AfeI	AGCGCT	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	2 cut(s)	777, 797
AluBI	AGCT	3 cut(s)	240, 676, 691
AluI	AGCT	3 cut(s)	240, 676, 691
Alw26I	GTCTC	3 cut(s)	108, 473, 537
AlwI	GGATC	1 cut(s)	729
AlwNI	CAGNNNCTG	1 cut(s)	590
Aor51HI	AGCGCT	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	673
ApoI	RAATTY	5 cut(s)	80, 95, 328, 471, 793
AseI	ATTAAT	1 cut(s)	54
AspLEI	GCGC	2 cut(s)	249, 673
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	777
BbsI	GAAGAC	1 cut(s)	633
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	2 cut(s)	236, 523
BciT130I	CCWGG	2 cut(s)	779, 799
BcoDI	GTCTC	3 cut(s)	108, 473, 537
BfaI	CTAG	2 cut(s)	660, 692
BfmI	CTRYAG	1 cut(s)	684
BfoI	RGCGCY	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	2 cut(s)	132, 674
BlsI	GCNGC	2 cut(s)	133, 675
Bme1390I	CCNGG	2 cut(s)	779, 799
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	1 cut(s)	776
BmrFI	CCNGG	2 cut(s)	779, 799
BmsI	GCATC	6 cut(s)	19, 114, 172, 343, 658, 771
BpiI	GAAGAC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	72, 739
BsaWI	WCCGGW	1 cut(s)	499
Bse3DI	GCAATG	2 cut(s)	282, 320
BseBI	CCWGG	2 cut(s)	779, 799
BseDI	CCNNGG	2 cut(s)	72, 739
BseGI	GGATG	6 cut(s)	129, 184, 228, 295, 358, 745
BseMI	GCAATG	2 cut(s)	282, 320
BseMII	CTCAG	4 cut(s)	35, 474, 548, 774
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	685
BsgI	GTGCAG	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	419
BsmAI	GTCTC	3 cut(s)	108, 473, 537
BsmFI	GGGAC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp143I	GATC	2 cut(s)	642, 721
BspACI	CCGC	2 cut(s)	132, 749
BspCNI	CTCAG	4 cut(s)	34, 475, 547, 775
BspLI	GGNNCC	1 cut(s)	776
BspMAI	CTGCAG	1 cut(s)	688
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	1 cut(s)	729
BsrDI	GCAATG	2 cut(s)	282, 320
BssECI	CCNNGG	2 cut(s)	72, 739
BssMI	GATC	2 cut(s)	642, 721
Bst2UI	CCWGG	2 cut(s)	779, 799
Bst4CI	ACNGT	4 cut(s)	33, 457, 616, 623
BstAPI	GCANNNNNTGC	2 cut(s)	581, 590
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	4 cut(s)	21, 483, 534, 783
BstDSI	CCRYGG	2 cut(s)	72, 739
BstF5I	GGATG	6 cut(s)	129, 184, 228, 295, 358, 745
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	249, 673
BstKTI	GATC	2 cut(s)	645, 724
BstMAI	GTCTC	3 cut(s)	108, 473, 537
BstMBI	GATC	2 cut(s)	642, 721
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 535, 581, 590
BstNI	CCWGG	2 cut(s)	779, 799
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	2 cut(s)	777, 797
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	685
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	721
BstXI	CCANNNNNNTGG	2 cut(s)	374, 603
BstYI	RGATCY	1 cut(s)	721
BtgI	CCRYGG	2 cut(s)	72, 739
BtsCI	GGATG	6 cut(s)	129, 184, 228, 295, 358, 745
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 645
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	2 cut(s)	249, 673
Cfr13I	GGNCC	1 cut(s)	587
Csp6I	GTAC	2 cut(s)	155, 458
CviAII	CATG	4 cut(s)	151, 268, 385, 570
CviJI	RGCY	6 cut(s)	175, 240, 676, 691, 775, 782
CviKI_1	RGCY	6 cut(s)	175, 240, 676, 691, 775, 782
CviQI	GTAC	2 cut(s)	155, 458
DdeI	CTNAG	4 cut(s)	21, 483, 534, 783
DpnI	GATC	2 cut(s)	644, 723
DpnII	GATC	2 cut(s)	642, 721
Eco24I	GRGCYC	1 cut(s)	777
Eco47I	GGWCC	1 cut(s)	587
Eco47III	AGCGCT	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	777, 797
EcoT22I	ATGCAT	2 cut(s)	12, 187
EcoT38I	GRGCYC	1 cut(s)	777
FaeI	CATG	4 cut(s)	154, 271, 388, 573
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	150, 267, 384, 569
Fnu4HI	GCNGC	2 cut(s)	132, 674
FokI	GGATG	6 cut(s)	136, 191, 215, 302, 365, 732
FriOI	GRGCYC	1 cut(s)	777
Fsp4HI	GCNGC	2 cut(s)	132, 674
FspBI	CTAG	2 cut(s)	660, 692
FspI	TGCGCA	1 cut(s)	672
GlaI	GCGC	2 cut(s)	248, 672
GluI	GCNGC	2 cut(s)	132, 674
HaeII	RGCGCY	1 cut(s)	250
HapII	CCGG	1 cut(s)	500
HhaI	GCGC	2 cut(s)	249, 673
Hin1II	CATG	4 cut(s)	154, 271, 388, 573
Hin6I	GCGC	2 cut(s)	247, 671
HinP1I	GCGC	2 cut(s)	247, 671
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	4 cut(s)	43, 68, 428, 638
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	72, 619
Hpy188I	TCNGA	3 cut(s)	415, 523, 717
Hpy188III	TCNNGA	2 cut(s)	440, 547
Hpy8I	GTNNAC	2 cut(s)	72, 619
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	4 cut(s)	33, 457, 616, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 535, 581, 590
HpyF3I	CTNAG	4 cut(s)	21, 483, 534, 783
Hsp92II	CATG	4 cut(s)	154, 271, 388, 573
HspAI	GCGC	2 cut(s)	247, 671
Kzo9I	GATC	2 cut(s)	642, 721
LmnI	GCTCC	3 cut(s)	230, 244, 780
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	6 cut(s)	19, 114, 172, 343, 658, 771
MaeI	CTAG	2 cut(s)	660, 692
MalI	GATC	2 cut(s)	644, 723
MboI	GATC	2 cut(s)	642, 721
MboII	GAAGA	3 cut(s)	510, 638, 648
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	777
MluCI	AATT	9 cut(s)	55, 80, 95, 140, 203, 328, 368, 471, 793
MlyI	GAGTC	3 cut(s)	77, 437, 647
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	70, 382, 409, 412, 694, 711
Mph1103I	ATGCAT	2 cut(s)	12, 187
MseI	TTAA	3 cut(s)	54, 110, 332
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	676
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	2 cut(s)	779, 799
MunI	CAATTG	1 cut(s)	140
MvaI	CCWGG	2 cut(s)	779, 799
MwoI	GCNNNNNNNGC	4 cut(s)	246, 535, 581, 590
NdeII	GATC	2 cut(s)	642, 721
NlaIII	CATG	4 cut(s)	154, 271, 388, 573
NlaIV	GGNNCC	1 cut(s)	776
NsbI	TGCGCA	1 cut(s)	672
NsiI	ATGCAT	2 cut(s)	12, 187
NspI	RCATGY	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	133, 675
PleI	GAGTC	3 cut(s)	76, 436, 646
PpsI	GAGTC	3 cut(s)	76, 436, 646
PpuMI	RGGWCCY	1 cut(s)	587
PshBI	ATTAAT	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	791
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	777, 797
PspGI	CCWGG	2 cut(s)	777, 797
PspN4I	GGNNCC	1 cut(s)	776
PspPI	GGNCC	1 cut(s)	587
PspPPI	RGGWCCY	1 cut(s)	587
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	676
RsaI	GTAC	2 cut(s)	156, 459
RsaNI	GTAC	2 cut(s)	155, 458
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	3 cut(s)	54, 110, 332
SatI	GCNGC	2 cut(s)	132, 674
Sau3AI	GATC	2 cut(s)	642, 721
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	3 cut(s)	77, 437, 647
ScrFI	CCNGG	2 cut(s)	779, 799
SduI	GDGCHC	1 cut(s)	777
SetI	ASST	9 cut(s)	27, 242, 310, 393, 589, 633, 678, 693, 803
SfaNI	GCATC	6 cut(s)	19, 114, 172, 343, 658, 771
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	9 cut(s)	55, 80, 95, 140, 203, 328, 368, 471, 793
SsiI	CCGC	2 cut(s)	132, 749
SspMI	CTAG	2 cut(s)	660, 692
StyD4I	CCNGG	2 cut(s)	777, 797
TaaI	ACNGT	4 cut(s)	33, 457, 616, 623
TaqI	TCGA	3 cut(s)	426, 511, 641
TasI	AATT	9 cut(s)	55, 80, 95, 140, 203, 328, 368, 471, 793
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	54, 110, 332
Tru9I	TTAA	3 cut(s)	54, 110, 332
TscAI	CASTG	2 cut(s)	363, 652
TseI	GCWGC	1 cut(s)	673
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	3 cut(s)	89, 89, 728
TspRI	CASTG	2 cut(s)	363, 652
VpaK11BI	GGWCC	1 cut(s)	587
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	5 cut(s)	80, 95, 328, 471, 793
XceI	RCATGY	1 cut(s)	573
XspI	CTAG	2 cut(s)	660, 692
Zsp2I	ATGCAT	2 cut(s)	12, 187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.