Rroxscaffold_160G00433630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0019101
Physical Location & Seq
Reverse (-)
6284 .. 9146
2863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433630.1

Sequence Viewer

Length: 387 bp
ATGTTCTTAAGATGTCTAGGAAACAGCTGCCTGTATAAGGATGAGAAAGCCATTTGGCGATGGACCACCTCGAGATCTTGTTTCTCTATTTTAAGGCTACAGTGCACTGTGTTATCCCACTCGTCTGTTGCATATGAAAACCGGGTGCTGGAGCTGAAGGGGCCACTTGAACTCTTAAAGGGCGTTAGAGCAGAAGAATGTACGTGCAGTTGTTCAGGAAAGCATGATACTACCCTCATCTTAGCTGTATTTATAATTAGTCGGTCAAAAAATGCTATTCAATGCAGAAAAGCCGAAGAATGTATGTGCAACTGTTCAAGAGCTGAGGTACAAGAGGGTCATGCTAGCATAAAATCATTGGCTGCCAGTAAGTCACATATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.32

Weight (kDa)

8.81

Isoelectric Point (pI)

63.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019101)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_160G00433630 Rroxscaffold_4G00328140
rosa_rugosa Rorug01G0055800
rosa_samantha Rh1BG039100 Rh1CG042700 Rh1DG023100 Rh1DG024800 Rh1DG026900
rosa_wichuraiana Rw1G003590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 202, 330
AfiI CCNNNNNNNGG 2 cut(s) 37, 148
AflII CTTAAG 1 cut(s) 7
AgsI TTSAA 3 cut(s) 170, 281, 318
AluBI AGCT 4 cut(s) 27, 154, 245, 323
AluI AGCT 4 cut(s) 27, 154, 245, 323
Alw21I GWGCWC 1 cut(s) 107
Alw44I GTGCAC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 1 cut(s) 161
ApaLI GTGCAC 1 cut(s) 103
ApeKI GCWGC 2 cut(s) 27, 362
AspS9I GGNCC 2 cut(s) 63, 161
AsuC2I CCSGG 1 cut(s) 143
AsuNHI GCTAGC 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 14, 349
BccI CCATC 1 cut(s) 54
BcnI CCSGG 1 cut(s) 143
BfaI CTAG 2 cut(s) 17, 345
BfmI CTRYAG 1 cut(s) 98
BfrI CTTAAG 1 cut(s) 7
BglII AGATCT 1 cut(s) 74
BisI GCNGC 2 cut(s) 28, 363
BlsI GCNGC 2 cut(s) 29, 364
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 63
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 63, 161
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 143
BmtI GCTAGC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 148
Bse1I ACTGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 37, 148
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 2 cut(s) 14, 349
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 37, 148
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 74
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 162
BspOI GCTAGC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 7
BsrI ACTGG 1 cut(s) 366
BssMI GATC 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 102, 109, 314
BstAFI CTTAAG 1 cut(s) 7
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 241, 324
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 1 cut(s) 98
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 14, 349
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 105, 107
Cac8I GCNNGC 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 63, 161
Csp6I GTAC 2 cut(s) 201, 329
CviAII CATG 2 cut(s) 224, 341
CviJI RGCY 9 cut(s) 27, 50, 97, 154, 163, 245, 293, 323, 362
CviKI_1 RGCY 9 cut(s) 27, 50, 97, 154, 163, 245, 293, 323, 362
CviQI GTAC 2 cut(s) 201, 329
DdeI CTNAG 2 cut(s) 241, 324
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 70
EcoNI CCTNNNNNAGG 1 cut(s) 35
FaeI CATG 2 cut(s) 227, 344
FaiI YATR 9 cut(s) 36, 133, 135, 225, 254, 305, 342, 350, 378
FatI CATG 2 cut(s) 223, 340
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 28, 363
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 28, 363
FspBI CTAG 2 cut(s) 17, 345
GluI GCNGC 2 cut(s) 28, 363
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 142
Hin1II CATG 2 cut(s) 227, 344
HpaII CCGG 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 105
Hpy188III TCNNGA 3 cut(s) 72, 216, 318
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 3 cut(s) 102, 109, 314
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 5 cut(s) 105, 131, 207, 285, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 241, 324
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 2 cut(s) 227, 344
Kzo9I GATC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 44, 134, 155, 201, 379
Lsp1109I GCAGC 2 cut(s) 14, 349
MaeI CTAG 2 cut(s) 17, 345
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 372
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 2 cut(s) 206, 308
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 255
MnlI CCTC 4 cut(s) 79, 245, 319, 328
MseI TTAA 3 cut(s) 8, 92, 176
MspA1I CMGCKG 1 cut(s) 27
MspCI CTTAAG 1 cut(s) 7
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 133
NdeII GATC 1 cut(s) 74
NheI GCTAGC 1 cut(s) 344
NlaIII CATG 2 cut(s) 227, 344
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 70
PkrI GCNGC 2 cut(s) 29, 364
Ppu21I YACGTR 1 cut(s) 204
PsiI TTATAA 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 2 cut(s) 63, 161
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 27
RsaI GTAC 2 cut(s) 202, 330
RsaNI GTAC 2 cut(s) 201, 329
SaqAI TTAA 3 cut(s) 8, 92, 176
SatI GCNGC 2 cut(s) 28, 363
Sau3AI GATC 1 cut(s) 74
Sau96I GGNCC 2 cut(s) 63, 161
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 107
SetI ASST 7 cut(s) 29, 71, 156, 206, 247, 325, 330
SfcI CTRYAG 1 cut(s) 98
Sfr274I CTCGAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 7, 70
SmoI CTYRAG 2 cut(s) 7, 70
Sse9I AATT 1 cut(s) 255
SspMI CTAG 2 cut(s) 17, 345
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 3 cut(s) 102, 109, 314
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 71
TaqII GACCGA 1 cut(s) 252
TasI AATT 1 cut(s) 255
Tru1I TTAA 3 cut(s) 8, 92, 176
Tru9I TTAA 3 cut(s) 8, 92, 176
TscAI CASTG 2 cut(s) 107, 112
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 2 cut(s) 27, 362
Tsp45I GTSAC 1 cut(s) 372
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 2 cut(s) 107, 112
Vha464I CTTAAG 1 cut(s) 7
VneI GTGCAC 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 70
XspI CTAG 2 cut(s) 17, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.