NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| EMG1 | PF03587 | 75 - 206 | 2.4e-51 | EMG1/NEP1 methyltransferase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 207, 487 |
| AcsI | RAATTY | 2 cut(s) | 283, 301 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 113, 206, 358 |
| AgsI | TTSAA | 3 cut(s) | 158, 283, 310 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 215 |
| AjnI | CCWGG | 1 cut(s) | 211 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 227, 259 |
| AluBI | AGCT | 5 cut(s) | 110, 239, 277, 398, 511 |
| AluI | AGCT | 5 cut(s) | 110, 239, 277, 398, 511 |
| Alw26I | GTCTC | 1 cut(s) | 57 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 523 |
| AoxI | GGCC | 2 cut(s) | 8, 341 |
| ApeKI | GCWGC | 3 cut(s) | 77, 508, 511 |
| ApoI | RAATTY | 2 cut(s) | 283, 301 |
| AseI | ATTAAT | 1 cut(s) | 390 |
| AspS9I | GGNCC | 1 cut(s) | 209 |
| AsuC2I | CCSGG | 1 cut(s) | 607 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 128 |
| AvaII | GGWCC | 1 cut(s) | 209 |
| BbsI | GAAGAC | 1 cut(s) | 431 |
| BbvI | GCAGC | 3 cut(s) | 89, 498, 520 |
| BccI | CCATC | 1 cut(s) | 428 |
| BceAI | ACGGC | 1 cut(s) | 521 |
| BciT130I | CCWGG | 1 cut(s) | 213 |
| BciVI | GTATCC | 1 cut(s) | 479 |
| BclI | TGATCA | 2 cut(s) | 292, 567 |
| BcnI | CCSGG | 1 cut(s) | 607 |
| BcoDI | GTCTC | 1 cut(s) | 57 |
| BfmI | CTRYAG | 1 cut(s) | 515 |
| BfuI | GTATCC | 1 cut(s) | 479 |
| BisI | GCNGC | 3 cut(s) | 78, 509, 512 |
| BlsI | GCNGC | 3 cut(s) | 79, 510, 513 |
| Bme1390I | CCNGG | 2 cut(s) | 213, 607 |
| Bme18I | GGWCC | 1 cut(s) | 209 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 1 cut(s) | 209 |
| BmiI | GGNNCC | 1 cut(s) | 96 |
| BmrFI | CCNGG | 2 cut(s) | 213, 607 |
| BmrI | ACTGGG | 1 cut(s) | 93 |
| BmuI | ACTGGG | 1 cut(s) | 93 |
| BpiI | GAAGAC | 1 cut(s) | 431 |
| BpuEI | CTTGAG | 2 cut(s) | 182, 251 |
| BpuMI | CCSGG | 1 cut(s) | 607 |
| BsaJI | CCNNGG | 3 cut(s) | 212, 429, 473 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 113, 206, 358 |
| Bse1I | ACTGG | 1 cut(s) | 99 |
| BseBI | CCWGG | 1 cut(s) | 213 |
| BseDI | CCNNGG | 3 cut(s) | 212, 429, 473 |
| BseGI | GGATG | 1 cut(s) | 439 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 113, 206, 358 |
| BseMII | CTCAG | 1 cut(s) | 515 |
| BseNI | ACTGG | 1 cut(s) | 99 |
| BseRI | GAGGAG | 1 cut(s) | 356 |
| BseXI | GCAGC | 3 cut(s) | 89, 498, 520 |
| BseYI | CCCAGC | 1 cut(s) | 398 |
| BshFI | GGCC | 2 cut(s) | 10, 343 |
| BsiSI | CCGG | 1 cut(s) | 607 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 113, 206, 358 |
| BsmAI | GTCTC | 1 cut(s) | 57 |
| BsmBI | CGTCTC | 1 cut(s) | 57 |
| BsmI | GAATGC | 1 cut(s) | 168 |
| BsnI | GGCC | 2 cut(s) | 10, 343 |
| Bsp143I | GATC | 2 cut(s) | 292, 567 |
| BspACI | CCGC | 2 cut(s) | 207, 487 |
| BspANI | GGCC | 2 cut(s) | 10, 343 |
| BspCNI | CTCAG | 1 cut(s) | 516 |
| BspLI | GGNNCC | 1 cut(s) | 96 |
| BsrI | ACTGG | 1 cut(s) | 99 |
| BssECI | CCNNGG | 3 cut(s) | 212, 429, 473 |
| BssMI | GATC | 2 cut(s) | 292, 567 |
| BssT1I | CCWWGG | 1 cut(s) | 473 |
| Bst2UI | CCWGG | 1 cut(s) | 213 |
| Bst4CI | ACNGT | 1 cut(s) | 588 |
| Bst6I | CTCTTC | 1 cut(s) | 42 |
| BstC8I | GCNNGC | 1 cut(s) | 149 |
| BstDEI | CTNAG | 1 cut(s) | 524 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 356 |
| BstF5I | GGATG | 1 cut(s) | 439 |
| BstKTI | GATC | 2 cut(s) | 295, 570 |
| BstMAI | GTCTC | 1 cut(s) | 57 |
| BstMBI | GATC | 2 cut(s) | 292, 567 |
| BstNI | CCWGG | 1 cut(s) | 213 |
| BstSCI | CCNGG | 2 cut(s) | 211, 605 |
| BstSFI | CTRYAG | 1 cut(s) | 515 |
| BstV1I | GCAGC | 3 cut(s) | 89, 498, 520 |
| BstV2I | GAAGAC | 1 cut(s) | 431 |
| BsuI | GTATCC | 1 cut(s) | 479 |
| BsuRI | GGCC | 2 cut(s) | 10, 343 |
| BtgZI | GCGATG | 1 cut(s) | 424 |
| BtsCI | GGATG | 1 cut(s) | 439 |
| BtsI | GCAGTG | 1 cut(s) | 24 |
| BtsIMutI | CAGTG | 1 cut(s) | 24 |
| Cac8I | GCNNGC | 1 cut(s) | 149 |
| CaiI | CAGNNNCTG | 1 cut(s) | 523 |
| Cfr13I | GGNCC | 1 cut(s) | 209 |
| CviAII | CATG | 3 cut(s) | 296, 370, 502 |
| CviJI | RGCY | 9 cut(s) | 10, 110, 239, 277, 343, 362, 384, 398, 511 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 110, 239, 277, 343, 362, 384, 398, 511 |
| DdeI | CTNAG | 1 cut(s) | 524 |
| DpnI | GATC | 2 cut(s) | 294, 569 |
| DpnII | GATC | 2 cut(s) | 292, 567 |
| DriI | GACNNNNNGTC | 1 cut(s) | 215 |
| Eam1104I | CTCTTC | 1 cut(s) | 42 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 215 |
| EarI | CTCTTC | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 1 cut(s) | 473 |
| Eco147I | AGGCCT | 1 cut(s) | 343 |
| Eco32I | GATATC | 1 cut(s) | 349 |
| Eco47I | GGWCC | 1 cut(s) | 209 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 356 |
| EcoRI | GAATTC | 1 cut(s) | 283 |
| EcoRII | CCWGG | 1 cut(s) | 211 |
| EcoRV | GATATC | 1 cut(s) | 349 |
| EcoT14I | CCWWGG | 1 cut(s) | 473 |
| ErhI | CCWWGG | 1 cut(s) | 473 |
| Esp3I | CGTCTC | 1 cut(s) | 57 |
| FaeI | CATG | 3 cut(s) | 299, 373, 505 |
| FatI | CATG | 3 cut(s) | 295, 369, 501 |
| FauNDI | CATATG | 1 cut(s) | 460 |
| FbaI | TGATCA | 2 cut(s) | 292, 567 |
| Fnu4HI | GCNGC | 3 cut(s) | 78, 509, 512 |
| FokI | GGATG | 1 cut(s) | 446 |
| Fsp4HI | GCNGC | 3 cut(s) | 78, 509, 512 |
| GluI | GCNGC | 3 cut(s) | 78, 509, 512 |
| GsaI | CCCAGC | 1 cut(s) | 402 |
| HaeIII | GGCC | 2 cut(s) | 10, 343 |
| HapII | CCGG | 1 cut(s) | 607 |
| Hin1II | CATG | 3 cut(s) | 299, 373, 505 |
| HincII | GTYRAC | 1 cut(s) | 601 |
| HindII | GTYRAC | 1 cut(s) | 601 |
| HindIII | AAGCTT | 1 cut(s) | 237 |
| HpaI | GTTAAC | 1 cut(s) | 601 |
| HpaII | CCGG | 1 cut(s) | 607 |
| HphI | GGTGA | 2 cut(s) | 16, 128 |
| Hpy166II | GTNNAC | 3 cut(s) | 104, 440, 601 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 621 |
| Hpy188III | TCNNGA | 2 cut(s) | 307, 571 |
| Hpy8I | GTNNAC | 3 cut(s) | 104, 440, 601 |
| HpyAV | CCTTC | 3 cut(s) | 16, 310, 362 |
| HpyCH4III | ACNGT | 1 cut(s) | 588 |
| HpyCH4IV | ACGT | 1 cut(s) | 479 |
| HpyCH4V | TGCA | 2 cut(s) | 299, 508 |
| HpyF3I | CTNAG | 1 cut(s) | 524 |
| HpySE526I | ACGT | 1 cut(s) | 479 |
| Hsp92II | CATG | 3 cut(s) | 299, 373, 505 |
| Ksp22I | TGATCA | 2 cut(s) | 292, 567 |
| KspAI | GTTAAC | 1 cut(s) | 601 |
| Kzo9I | GATC | 2 cut(s) | 292, 567 |
| Lsp1109I | GCAGC | 3 cut(s) | 89, 498, 520 |
| MaeII | ACGT | 1 cut(s) | 479 |
| MaeIII | GTNAC | 2 cut(s) | 116, 580 |
| MalI | GATC | 2 cut(s) | 294, 569 |
| MboI | GATC | 2 cut(s) | 292, 567 |
| MboII | GAAGA | 6 cut(s) | 59, 80, 83, 322, 325, 436 |
| MfeI | CAATTG | 1 cut(s) | 174 |
| MluCI | AATT | 5 cut(s) | 152, 174, 283, 301, 625 |
| MmeI | TCCRAC | 1 cut(s) | 241 |
| MnlI | CCTC | 7 cut(s) | 36, 85, 136, 157, 377, 396, 424 |
| MseI | TTAA | 4 cut(s) | 390, 453, 483, 600 |
| MspA1I | CMGCKG | 1 cut(s) | 511 |
| MspI | CCGG | 1 cut(s) | 607 |
| MspR9I | CCNGG | 2 cut(s) | 213, 607 |
| MunI | CAATTG | 1 cut(s) | 174 |
| Mva1269I | GAATGC | 1 cut(s) | 168 |
| MvaI | CCWGG | 1 cut(s) | 213 |
| NciI | CCSGG | 1 cut(s) | 607 |
| NdeI | CATATG | 1 cut(s) | 460 |
| NdeII | GATC | 2 cut(s) | 292, 567 |
| NlaIII | CATG | 3 cut(s) | 299, 373, 505 |
| NlaIV | GGNNCC | 1 cut(s) | 96 |
| NmuCI | GTSAC | 2 cut(s) | 116, 580 |
| PceI | AGGCCT | 1 cut(s) | 343 |
| PctI | GAATGC | 1 cut(s) | 168 |
| PfoI | TCCNGGA | 1 cut(s) | 605 |
| PkrI | GCNGC | 3 cut(s) | 79, 510, 513 |
| PshBI | ATTAAT | 1 cut(s) | 390 |
| Psp6I | CCWGG | 1 cut(s) | 211 |
| PspFI | CCCAGC | 1 cut(s) | 398 |
| PspGI | CCWGG | 1 cut(s) | 211 |
| PspN4I | GGNNCC | 1 cut(s) | 96 |
| PspPI | GGNCC | 1 cut(s) | 209 |
| PstNI | CAGNNNCTG | 1 cut(s) | 523 |
| PvuII | CAGCTG | 1 cut(s) | 511 |
| SaqAI | TTAA | 4 cut(s) | 390, 453, 483, 600 |
| SatI | GCNGC | 3 cut(s) | 78, 509, 512 |
| Sau3AI | GATC | 2 cut(s) | 292, 567 |
| Sau96I | GGNCC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 2 cut(s) | 213, 607 |
| SetI | ASST | 9 cut(s) | 112, 214, 241, 279, 400, 407, 482, 513, 598 |
| SfcI | CTRYAG | 1 cut(s) | 515 |
| SinI | GGWCC | 1 cut(s) | 209 |
| SmlI | CTYRAG | 2 cut(s) | 161, 230 |
| SmoI | CTYRAG | 2 cut(s) | 161, 230 |
| Sse9I | AATT | 5 cut(s) | 152, 174, 283, 301, 625 |
| SseBI | AGGCCT | 1 cut(s) | 343 |
| SsiI | CCGC | 2 cut(s) | 207, 487 |
| StuI | AGGCCT | 1 cut(s) | 343 |
| StyD4I | CCNGG | 2 cut(s) | 211, 605 |
| StyI | CCWWGG | 1 cut(s) | 473 |
| TaaI | ACNGT | 1 cut(s) | 588 |
| TaiI | ACGT | 1 cut(s) | 482 |
| TaqII | GACCGA | 1 cut(s) | 443 |
| TasI | AATT | 5 cut(s) | 152, 174, 283, 301, 625 |
| Tru1I | TTAA | 4 cut(s) | 390, 453, 483, 600 |
| Tru9I | TTAA | 4 cut(s) | 390, 453, 483, 600 |
| TscAI | CASTG | 1 cut(s) | 24 |
| TseFI | GTSAC | 2 cut(s) | 116, 580 |
| TseI | GCWGC | 3 cut(s) | 77, 508, 511 |
| Tsp45I | GTSAC | 2 cut(s) | 116, 580 |
| TspDTI | ATGAA | 2 cut(s) | 141, 344 |
| TspRI | CASTG | 1 cut(s) | 24 |
| VpaK11BI | GGWCC | 1 cut(s) | 209 |
| VspI | ATTAAT | 1 cut(s) | 390 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 356 |
| XapI | RAATTY | 2 cut(s) | 283, 301 |