RchiOBHm_Chr1g0321091

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000070
Physical Location & Seq
Reverse (-)
8567687 .. 8572069
4383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55117

Sequence Viewer

Length: 4077 bp
ATGGCATTGGGAGAGATCTTTCTTGCGGCATTCCTTCAGTTGCTGCTGGACAGGTTAACGCCTCGGGAGGTCCTGGGCTACTTTGGAAGCTTGGGAGGAGTTGGCAAAAAGCTGCAGAAATTGAGGGAAACACTGTCCGCAGTTGCGGCGGTGCTTTCCGATGCGGAGGAGAAGCAGTTGACGAACAAGGCAGTGGAGCTGTGGCTGAATGACCTCAGACACTTGGCTTACGATATCGACGATCTACTCAACACCTTTCCTAATGAGATGTTAGAAGGCGAGCAGCTCAAGCTTCACCAAACTGGCACAAGCAAGGTACGAAGCTTCTTTACCAAAGGTCCTCACAAAGTCAGGTTCATTTTCAATATGAACTCCCAAATAGAGGAGATTTCTAATCGCTTGCAAAAGATATTTGACCTGAAAAAGAATCTTGGTTTGAAAGTGACTGGGCTTAACTCTACTTCAACATCCTCATGGCAAAGGCCACCAGGTTCGTATGTGTTGGATGGACCTGTGGTTGGGAGAGATGAAGACGCAAGAAAAATTGTTAAATTGTTGTCCAGAGATGTTGATCCTTCTTCTACCACCAATTATCAAGTTGTTGCCATTGTTGGTATGGGAGGAGTCGGCAAGACAACGATTGCGGGACAAGTCTTCAATGATGTAGCTGCAAAGGAACAGTTTGATCTCAAGGTCTGGGTTTCAGTGTCCGATGACTTCAATCTTGAAACGGTGACGAGAACTATTTTTAAGAAAGTCACATCTGGGCCATGTGATATTGATGATTTCAGTCAACTTCAAGATGATCTGAGCAAGGCGCTGGATGGTAAAAGGTTTTTGATTGTTTTAGATGATGTCTGGAGCACGTGTGGTTATGATTCATGGACAAAACTGCAAGCTCCCCTCCGTGGCGGAGCCAAGGGAAGTAAGGTAATGGTGACAACACGTGATGAAAAAGTTGCAGTATTAATGGGAGCTCGAGCCGCTGGAGTTTATTATTTAAAGAGACTATCAGATGAATGTTGTCTACAAGTATTTGAGCAGCATGTTAGCAATGACAGGCCACCAAATTTTGACTTGCTTAAGAAGAAAATTGTTACGAACTGCAATGGATTGCCATTGGCTGCAAAAACTCTTGGTGGTGTTTTACGTTGTAAAGAAACTGACAAGTGGGAGGAAATACTGAATGACAAATTATGGAGTATATCAGATGGGAGTGAAATACTCCCAGTACTGAGATTGAGTTATCTTTATCTCCCTTCAACTTTGAAGAGGTGCTTTGCTTATTGCTCAATACTTCCCAATGACTACAAATTTGAGAAAACCCAATTAATCCTTCTGTGGATGGCAGAGGGTTTTCTTGAGCAACCAGAAGGGGCTAAAGCAATGGAAGATATCGGTGACGAATATTTCGGGGAGCTATTGTCTCGGTCATTATTTCAAAATTCGGGCAAAAACAGTTCACATTATGTAATGCATGACCTTGTTGGTGATTTGGCACGATGGGCTGCTGGAGACACATTTTGCAGATTAGAGGATAAACCGCATGGTAGATGTTCTCCAAAGACTCGTCATCTGGCTTACACTTCTAGTAAGTTCGATGGGGTAAAAAGATTTGAGACATTTTCTGGAGCAAAACGCTTGCGGACTTTCCTACCACTTCCTGTTTCCGGTGGTTATGAGAATTATCTAACTCGTTATGCTACTTCTGATTTATTGCCACAATTGAAGTACTTGCGGGTGCTCTCTTTCAATGGTTATAAACTGACCGAGCTGCCAAAATCCGTAGGTAAGTTGAGACATCTACAGTACCTTGATCTTTCTCACACATTAATAACGAGTTTGCCTGAGTCAACATGCATGCTTTACAACTTACATACGTTAATATTAGAGAATTGTTCAAAATTGAAGACACTACCTTCAAACATGAGCAATTTATCTAATTTACGTCATCTCAACAATTCAAACATGCCTTCATTGGAAGAAATGCCTCCCCAAGTAAGTCGGTTGATTCATCTGCGAACTTTGCCTAACTTTGTGGTGGGGAGATCCGGGATTGGAGAGATAGGGTCATTGCATCTTTGTGGAACCTTGAGCGTTAGAAGATTGGAAAATGTGATTGATGTTGGGGATGCGAAGAGGGCCCAAATAATGAACAAGGAAGGGCTAAAAACCTTGCAATTGGAATGGAGTGGCACAAGTGAGAAGGAGTCGGAGGTGCTCTGCAGTTTAGAACCTCATAAAAAGCTTCTACACCTCACTATCAAGGGCTACAATGGTTCCGAACTTTCCAAATGGATTGGACGGCCTTCATTCTCTGATATGAAGTTTGTGAAGTTAGAGGACTGTAAAAACTGTCGATTCTTACCCCCTTTTGGCCAGTTACCTTGTCTGAAAAGCCTTTGGATAAAAGGACTGGCCAGTGTTGAAAGTGTGGGTGCTGAGTTTTATGGAGAGTGTAGCTTGCCTTTTCAAGTCTTGGAATTCCTAGGGTTCGAGGATATGCAAAATTGGAAGGATTGGCTTCCTTGCAAAATAAATGAAGAAGTTCGAGTTTTTCCATGCATAGAATTGCTTGACATCCGTAGTTGCCCCAAATGGAAGGGTTGGTTGCCCAAGATGGATTCATTATCACGTATGTTTATTAATGAATGTGAAGTGTCAGTGGTTTCAATAGCCAATTATAAACATCTTCATGATTTGACCATCAACGGTTGTAAAAGGGTGGTGCACAGAAGTGGAGTTAAGTTTGAGTCACTGGAGGATTTGGGGTTTTCAAGTATTCCGGAGTTCAGACTCGAAATAGATGGGTTCATCAGAGGATTACCAAAGCTTCAAAGATTGTGGATTACTGATTGTGAAGAGTTGACATGTCTGTGGGAGAATGAGGATAGATGGCTGCAGCCTCGGATTTCTAATAATATTGGAGGCAACATCTCTGACTCCCCCTCTCACTTTATTCAAGAGCTAAGAGCACTCAAGGAACTTCACTTAACTGGATGCTCAAATCTAATTTCTTTTCCAGAAGCTGGTTGGCCACCTTGTCTTGAATATGTAAAGATGGAGTCGTGTAATTCTTTGATGCATTTTGTGAGGCATCAGGTACCACCGAGCATAAAAAGATTAGAGATAGCAAAATGTCAAAATTTGAAACTATTAGTCAAGGATGCTGAGGAGGTAGAGAGTTGTCTGGAGTACTTGGAGATAAAAGAGTGTGCATCTTTAACATCTTTATCAAGCAAAGGAGGCCGATTACCCAGGACGCTCAAATATCTTTGGATAAGTGACTGTGAAAAATTGGAGTCAATAATCAGAACATTCCACGATGACACCTGTCTTGAACATATTCACATAGGCAGGTGTGCAAATCTCAAATCCTTACCAGAGGGGCTATGCCATCTCTCCATTCTTCGCAAGTTAAAGATACGCGAATGTGGAAGTCTCGTTTCCTTCCCGAGAGGAGGGTTGCCATCCAACCTGATAGACTTTCGTATCGTCAATTGTCGTCAAGCCCTCCCCAGAGGCATAGGCAACCTCAGCTCTCTTCAGTTTTTGCTGTTGGGATACTGTGGAGGTTTGGCATCCATTATAGAAGAGGGTTTCCCACCCAACCTAATTAATCTTCATATTTGGACTCCCGAAAGCTGCAAGCCTCTCTCAGAGTGGGGGCTTCACCACTTGGACAGACTCACCTCTCTTAAACAATTGGTCATCGGTGGTGTAGATCCAAATTTGGTGTCCTTTCCGCCAAAGGAGGTGCTGCTCCCTAAATCTCTCATTCAACTCACCATTGGAGTCTTCCCAAATCTGAAGCGCCTGTCATCATCTTTTCAATCACTCACCTCTCTTGAATCGCTTGACATTATTGAGTGCCCAAAGCTAGCATCTATTATCCCAGAACATGAGGATCATCTGCCTCTTTCACTTACACAGCTTCGCATCTATGAGGGCTGTCCGCTGCTCACAAAGAAATACCAACCAGGTAAAGGACGACACTGGCCCAAACAAATAGCCCACATCCCTTACGTTTATGTTGGAGACTACAAGGACGAAGCCAAAGCCGACCGCTGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1358

Amino Acids

153.28

Weight (kDa)

8.04

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 94 1.4e-18 Rx N-terminal domain
NB-ARC PF00931 195 - 352 3.6e-37 NB-ARC domain
WHD_DRP PF23559 432 - 500 4.7e-24 Disease resistance protein Winged helix domain
LRR_14 PF23598 573 - 833 2.3e-20 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 687 - 805 2.6e-31 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1761, 2685
AarI CACCTGC 1 cut(s) 3348
Acc36I ACCTGC 1 cut(s) 3348
Acc65I GGTACC 1 cut(s) 3103
AccB1I GGYRCC 1 cut(s) 3103
AccB7I CCANNNNNTGG 1 cut(s) 3029
AccI GTMKAC 1 cut(s) 1027
AccII CGCG 1 cut(s) 3429
AccIII TCCGGA 1 cut(s) 2785
AclWI GGATC 4 cut(s) 566, 2043, 3719, 3915
AcoI YGGCCR 3 cut(s) 2377, 2418, 3035
AcsI RAATTY 6 cut(s) 1069, 1313, 1444, 2483, 3145, 3730
AcuI CTGAAG 3 cut(s) 20, 3530, 3830
AcvI CACGTG 2 cut(s) 867, 947
AfaI GTAC 6 cut(s) 318, 1233, 1733, 1811, 3105, 3197
AfiI CCNNNNNNNGG 9 cut(s) 382, 518, 908, 1670, 2375, 3029, 3461, 3986, 4068
AflII CTTAAG 1 cut(s) 1082
AflIII ACRYGT 3 cut(s) 866, 944, 2870
AjnI CCWGG 4 cut(s) 72, 487, 3257, 3979
AjuI GAANNNNNNNTTGG 2 cut(s) 1320, 1352
AleI CACNNNNGTG 1 cut(s) 2736
Alw21I GWGCWC 6 cut(s) 866, 979, 1746, 2223, 2733, 2977
Alw26I GTCTC 7 cut(s) 1000, 1431, 1509, 1613, 1792, 3446, 4032
Alw44I GTGCAC 1 cut(s) 2729
AlwI GGATC 4 cut(s) 566, 2043, 3719, 3915
AlwNI CAGNNNCTG 2 cut(s) 43, 3029
Ama87I CYCGRG 3 cut(s) 63, 978, 3454
Aor13HI TCCGGA 1 cut(s) 2785
ApaI GGGCCC 1 cut(s) 2146
ApaLI GTGCAC 1 cut(s) 2729
ApoI RAATTY 6 cut(s) 1069, 1313, 1444, 2483, 3145, 3730
ArsI GACNNNNNNTTYG 6 cut(s) 1298, 1330, 1394, 1426, 3722, 3754
AseI ATTAAT 5 cut(s) 968, 1331, 1832, 2646, 3618
Asp700I GAANNNNTTC 2 cut(s) 2547, 3345
Asp718I GGTACC 1 cut(s) 3103
AspA2I CCTAGG 1 cut(s) 2488
AspLEI GCGC 2 cut(s) 820, 3816
AspS9I GGNCC 7 cut(s) 70, 338, 509, 767, 2142, 2143, 3999
AsuC2I CCSGG 1 cut(s) 2053
AsuHPI GGTGA 9 cut(s) 287, 745, 949, 1412, 1502, 3665, 3682, 3778, 3832
AsuNHI GCTAGC 1 cut(s) 3880
AvaI CYCGRG 3 cut(s) 63, 978, 3454
AvaII GGWCC 3 cut(s) 70, 338, 509
AvrII CCTAGG 1 cut(s) 2488
BaeGI GKGCMC 3 cut(s) 2146, 2733, 3875
BaeI ACNNNNGTAYC 2 cut(s) 3475, 3508
BalI TGGCCA 3 cut(s) 2379, 2420, 3037
BanI GGYRCC 1 cut(s) 3103
BanII GRGCYC 2 cut(s) 979, 2146
BarI GAAGNNNNNNTAC 2 cut(s) 313, 345
BbrPI CACGTG 2 cut(s) 867, 947
BbsI GAAGAC 4 cut(s) 537, 646, 1916, 3790
Bbv12I GWGCWC 6 cut(s) 866, 979, 1746, 2223, 2733, 2977
BbvCI CCTCAGC 2 cut(s) 3171, 3536
BceAI ACGGC 1 cut(s) 2321
BciT130I CCWGG 4 cut(s) 74, 489, 3259, 3981
BciVI GTATCC 1 cut(s) 3557
BcnI CCSGG 1 cut(s) 2053
BcoDI GTCTC 7 cut(s) 1000, 1431, 1509, 1613, 1792, 3446, 4032
BfaI CTAG 3 cut(s) 1590, 2489, 3881
BfmI CTRYAG 4 cut(s) 113, 1805, 2224, 2900
BfoI RGCGCY 2 cut(s) 821, 3817
BfrI CTTAAG 1 cut(s) 1082
BfuAI ACCTGC 1 cut(s) 3348
BfuI GTATCC 1 cut(s) 3557
BglII AGATCT 1 cut(s) 15
BlnI CCTAGG 1 cut(s) 2488
BmcAI AGTACT 3 cut(s) 1233, 1733, 3197
Bme1390I CCNGG 5 cut(s) 74, 489, 2053, 3259, 3981
Bme18I GGWCC 3 cut(s) 70, 338, 509
BmeT110I CYCGRG 3 cut(s) 63, 978, 3454
BmgT120I GGNCC 7 cut(s) 70, 338, 509, 767, 2142, 2143, 3999
BmiI GGNNCC 5 cut(s) 916, 2089, 2144, 2281, 3105
BmrFI CCNGG 5 cut(s) 74, 489, 2053, 3259, 3981
BmrI ACTGGG 2 cut(s) 456, 1223
BmtI GCTAGC 1 cut(s) 3884
BmuI ACTGGG 2 cut(s) 456, 1223
BoxI GACNNNNGTC 1 cut(s) 3333
BpiI GAAGAC 4 cut(s) 537, 646, 1916, 3790
BpmI CTGGAG 6 cut(s) 880, 1008, 1533, 1650, 2780, 3212
Bpu10I CCTNAGC 2 cut(s) 3171, 3536
BpuEI CTTGAG 5 cut(s) 272, 674, 1382, 2113, 2963
BpuMI CCSGG 1 cut(s) 2053
BsaAI YACGTR 3 cut(s) 867, 947, 2636
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 7 cut(s) 62, 73, 907, 918, 2488, 2906, 3257
BsaWI WCCGGW 2 cut(s) 1670, 2785
BsaXI ACNNNNNCTCC 6 cut(s) 161, 191, 853, 883, 1409, 1439
Bsc4I CCNNNNNNNGG 9 cut(s) 382, 518, 908, 1670, 2375, 3029, 3461, 3986, 4068
Bse1I ACTGG 9 cut(s) 307, 451, 1229, 2380, 2421, 2421, 2763, 3001, 4001
Bse3DI GCAATG 4 cut(s) 1060, 1114, 1392, 2072
Bse8I GATNNNNATC 1 cut(s) 570
BseAI TCCGGA 1 cut(s) 2785
BseBI CCWGG 4 cut(s) 74, 489, 3259, 3981
BseDI CCNNGG 7 cut(s) 62, 73, 907, 918, 2488, 2906, 3257
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 9 cut(s) 382, 518, 908, 1670, 2375, 3029, 3461, 3986, 4068
BseMI GCAATG 4 cut(s) 1060, 1114, 1392, 2072
BseMII CTCAG 8 cut(s) 229, 800, 1226, 1839, 2433, 3162, 3550, 3672
BseNI ACTGG 9 cut(s) 307, 451, 1229, 2380, 2421, 2421, 2763, 3001, 4001
BseRI GAGGAG 6 cut(s) 111, 182, 398, 636, 3188, 3474
BseSI GKGCMC 3 cut(s) 2146, 2733, 3875
BseYI CCCAGC 1 cut(s) 4068
Bsh1236I CGCG 1 cut(s) 3429
Bsh1285I CGRYCG 1 cut(s) 4066
BshNI GGYRCC 1 cut(s) 3103
BsiEI CGRYCG 1 cut(s) 4066
BsiHKAI GWGCWC 6 cut(s) 866, 979, 1746, 2223, 2733, 2977
BsiHKCI CYCGRG 3 cut(s) 63, 978, 3454
BsiSI CCGG 3 cut(s) 1671, 2052, 2786
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 9 cut(s) 382, 518, 908, 1670, 2375, 3029, 3461, 3986, 4068
BsmAI GTCTC 7 cut(s) 1000, 1431, 1509, 1613, 1792, 3446, 4032
BsmFI GGGAC 1 cut(s) 660
BsmI GAATGC 1 cut(s) 29
BsoBI CYCGRG 3 cut(s) 63, 978, 3454
Bsp120I GGGCCC 1 cut(s) 2142
Bsp1286I GDGCHC 8 cut(s) 866, 979, 1746, 2146, 2223, 2733, 2977, 3875
Bsp13I TCCGGA 1 cut(s) 2785
Bsp143I GATC 9 cut(s) 15, 241, 571, 685, 805, 1816, 2048, 3724, 3907
BspCNI CTCAG 8 cut(s) 228, 801, 1227, 1840, 2434, 3163, 3549, 3671
BspEI TCCGGA 1 cut(s) 2785
BspFNI CGCG 1 cut(s) 3429
BspHI TCATGA 1 cut(s) 2695
BspLI GGNNCC 5 cut(s) 916, 2089, 2144, 2281, 3105
BspMAI CTGCAG 3 cut(s) 117, 2228, 2904
BspMI ACCTGC 1 cut(s) 3348
BspOI GCTAGC 1 cut(s) 3884
BspPI GGATC 4 cut(s) 566, 2043, 3719, 3915
BspT107I GGYRCC 1 cut(s) 3103
BspTI CTTAAG 1 cut(s) 1082
BsrDI GCAATG 4 cut(s) 1060, 1114, 1392, 2072
BsrI ACTGG 9 cut(s) 307, 451, 1229, 2380, 2421, 2421, 2763, 3001, 4001
BssECI CCNNGG 7 cut(s) 62, 73, 907, 918, 2488, 2906, 3257
BssMI GATC 9 cut(s) 15, 241, 571, 685, 805, 1816, 2048, 3724, 3907
BssT1I CCWWGG 2 cut(s) 918, 2488
Bst2UI CCWGG 4 cut(s) 74, 489, 3259, 3981
Bst6I CTCTTC 5 cut(s) 1265, 2132, 2856, 3549, 3588
BstAFI CTTAAG 1 cut(s) 1082
BstBAI YACGTR 3 cut(s) 867, 947, 2636
BstC8I GCNNGC 8 cut(s) 281, 401, 897, 1643, 1862, 2465, 3650, 3882
BstDEI CTNAG 9 cut(s) 215, 809, 1235, 1848, 2442, 2969, 3171, 3536, 3658
BstDSI CCRYGG 1 cut(s) 907
BstFNI CGCG 1 cut(s) 3429
BstH2I RGCGCY 2 cut(s) 821, 3817
BstHHI GCGC 2 cut(s) 820, 3816
BstKTI GATC 9 cut(s) 18, 244, 574, 688, 808, 1819, 2051, 3727, 3910
BstMAI GTCTC 7 cut(s) 1000, 1431, 1509, 1613, 1792, 3446, 4032
BstMBI GATC 9 cut(s) 15, 241, 571, 685, 805, 1816, 2048, 3724, 3907
BstMCI CGRYCG 1 cut(s) 4066
BstMWI GCNNNNNNNGC 8 cut(s) 146, 289, 983, 1505, 2026, 2141, 3246, 3537
BstNI CCWGG 4 cut(s) 74, 489, 3259, 3981
BstNSI RCATGY 5 cut(s) 1049, 1860, 1864, 1972, 2874
BstPAI GACNNNNGTC 1 cut(s) 3333
BstSCI CCNGG 5 cut(s) 72, 487, 2051, 3257, 3979
BstSFI CTRYAG 4 cut(s) 113, 1805, 2224, 2900
BstSLI GKGCMC 3 cut(s) 2146, 2733, 3875
BstUI CGCG 1 cut(s) 3429
BstV2I GAAGAC 4 cut(s) 537, 646, 1916, 3790
BstX2I RGATCY 3 cut(s) 15, 2048, 3724
BstYI RGATCY 3 cut(s) 15, 2048, 3724
BsuI GTATCC 1 cut(s) 3557
BtgI CCRYGG 1 cut(s) 907
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 7 cut(s) 131, 198, 711, 2428, 2670, 2756, 3994
BveI ACCTGC 1 cut(s) 3348
Cac8I GCNNGC 8 cut(s) 281, 401, 897, 1643, 1862, 2465, 3650, 3882
CaiI CAGNNNCTG 2 cut(s) 43, 3029
CciI TCATGA 1 cut(s) 2695
CfoI GCGC 2 cut(s) 820, 3816
Cfr13I GGNCC 7 cut(s) 70, 338, 509, 767, 2142, 2143, 3999
CseI GACGC 2 cut(s) 542, 3271
CsiI ACCWGGT 2 cut(s) 487, 3979
Csp6I GTAC 6 cut(s) 317, 1232, 1732, 1810, 3104, 3196
CspCI CAANNNNNGTGG 2 cut(s) 2825, 2860
CviQI GTAC 6 cut(s) 317, 1232, 1732, 1810, 3104, 3196
DdeI CTNAG 9 cut(s) 215, 809, 1235, 1848, 2442, 2969, 3171, 3536, 3658
DpnI GATC 9 cut(s) 17, 243, 573, 687, 807, 1818, 2050, 3726, 3909
DpnII GATC 9 cut(s) 15, 241, 571, 685, 805, 1816, 2048, 3724, 3907
DraI TTTAAA 1 cut(s) 1002
EaeI YGGCCR 3 cut(s) 2377, 2418, 3035
Eam1104I CTCTTC 5 cut(s) 1265, 2132, 2856, 3549, 3588
EarI CTCTTC 5 cut(s) 1265, 2132, 2856, 3549, 3588
EciI GGCGGA 2 cut(s) 927, 3735
Ecl136II GAGCTC 1 cut(s) 977
Eco130I CCWWGG 2 cut(s) 918, 2488
Eco24I GRGCYC 2 cut(s) 979, 2146
Eco32I GATATC 2 cut(s) 235, 1396
Eco47I GGWCC 3 cut(s) 70, 338, 509
Eco53kI GAGCTC 1 cut(s) 977
Eco57I CTGAAG 3 cut(s) 20, 3530, 3830
Eco72I CACGTG 2 cut(s) 867, 947
Eco88I CYCGRG 3 cut(s) 63, 978, 3454
EcoICRI GAGCTC 1 cut(s) 977
EcoO109I RGGNCCY 3 cut(s) 70, 338, 2142
EcoRI GAATTC 1 cut(s) 2483
EcoRII CCWGG 4 cut(s) 72, 487, 3257, 3979
EcoRV GATATC 2 cut(s) 235, 1396
EcoT14I CCWWGG 2 cut(s) 918, 2488
EcoT22I ATGCAT 4 cut(s) 1479, 1862, 2567, 3087
EcoT38I GRGCYC 2 cut(s) 979, 2146
ErhI CCWWGG 2 cut(s) 918, 2488
FalI AAGNNNNNCTT 2 cut(s) 1262, 1294
FaqI GGGAC 1 cut(s) 660
FauI CCCGC 2 cut(s) 637, 1731
FblI GTMKAC 1 cut(s) 1027
FriOI GRGCYC 2 cut(s) 979, 2146
FspBI CTAG 3 cut(s) 1590, 2489, 3881
GlaI GCGC 2 cut(s) 819, 3815
GsaI CCCAGC 1 cut(s) 4072
GsuI CTGGAG 6 cut(s) 880, 1008, 1533, 1650, 2780, 3212
HaeII RGCGCY 2 cut(s) 821, 3817
HapII CCGG 3 cut(s) 1671, 2052, 2786
HgaI GACGC 2 cut(s) 542, 3271
HhaI GCGC 2 cut(s) 820, 3816
Hin6I GCGC 2 cut(s) 818, 3814
HinP1I GCGC 2 cut(s) 818, 3814
HincII GTYRAC 5 cut(s) 57, 180, 794, 1854, 2868
HindII GTYRAC 5 cut(s) 57, 180, 794, 1854, 2868
HindIII AAGCTT 5 cut(s) 88, 290, 322, 2246, 2831
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 3 cut(s) 1671, 2052, 2786
HphI GGTGA 9 cut(s) 287, 745, 949, 1412, 1502, 3665, 3682, 3778, 3832
Hpy166II GTNNAC 8 cut(s) 57, 180, 794, 1028, 1463, 1854, 2731, 2868
Hpy8I GTNNAC 8 cut(s) 57, 180, 794, 1028, 1463, 1854, 2731, 2868
Hpy99I CGWCG 1 cut(s) 242
HpyCH4IV ACGT 7 cut(s) 866, 946, 1150, 1880, 1948, 2635, 4026
HpyF10VI GCNNNNNNNGC 8 cut(s) 146, 289, 983, 1505, 2026, 2141, 3246, 3537
HpyF3I CTNAG 9 cut(s) 215, 809, 1235, 1848, 2442, 2969, 3171, 3536, 3658
HpySE526I ACGT 7 cut(s) 866, 946, 1150, 1880, 1948, 2635, 4026
HspAI GCGC 2 cut(s) 818, 3814
Kpn2I TCCGGA 1 cut(s) 2785
KpnI GGTACC 1 cut(s) 3107
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 9 cut(s) 15, 241, 571, 685, 805, 1816, 2048, 3724, 3907
LmnI GCTCC 8 cut(s) 196, 861, 904, 914, 974, 1417, 1631, 3768
MabI ACCWGGT 2 cut(s) 487, 3979
MaeI CTAG 3 cut(s) 1590, 2489, 3881
MaeII ACGT 7 cut(s) 866, 946, 1150, 1880, 1948, 2635, 4026
MaeIII GTNAC 9 cut(s) 442, 733, 757, 937, 1096, 1400, 2382, 2754, 3284
MalI GATC 9 cut(s) 17, 243, 573, 687, 807, 1818, 2050, 3726, 3909
MboI GATC 9 cut(s) 15, 241, 571, 685, 805, 1816, 2048, 3724, 3907
MfeI CAATTG 4 cut(s) 1724, 2180, 3499, 3704
MflI RGATCY 3 cut(s) 15, 2048, 3724
MhlI GDGCHC 8 cut(s) 866, 979, 1746, 2146, 2223, 2733, 2977, 3875
MlsI TGGCCA 3 cut(s) 2379, 2420, 3037
MluNI TGGCCA 3 cut(s) 2379, 2420, 3037
MmeI TCCRAC 4 cut(s) 483, 2193, 3498, 4015
Mox20I TGGCCA 3 cut(s) 2379, 2420, 3037
Mph1103I ATGCAT 4 cut(s) 1479, 1862, 2567, 3087
MroI TCCGGA 1 cut(s) 2785
MroXI GAANNNNTTC 2 cut(s) 2547, 3345
MscI TGGCCA 3 cut(s) 2379, 2420, 3037
MslI CAYNNNNRTG 5 cut(s) 472, 2082, 2694, 2736, 2875
Msp20I TGGCCA 3 cut(s) 2379, 2420, 3037
MspA1I CMGCKG 3 cut(s) 986, 3958, 4068
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 3 cut(s) 1671, 2052, 2786
MspR9I CCNGG 5 cut(s) 74, 489, 2053, 3259, 3981
MunI CAATTG 4 cut(s) 1724, 2180, 3499, 3704
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 4 cut(s) 74, 489, 3259, 3981
MvnI CGCG 1 cut(s) 3429
MwoI GCNNNNNNNGC 8 cut(s) 146, 289, 983, 1505, 2026, 2141, 3246, 3537
NciI CCSGG 1 cut(s) 2053
NdeII GATC 9 cut(s) 15, 241, 571, 685, 805, 1816, 2048, 3724, 3907
NheI GCTAGC 1 cut(s) 3880
NlaIV GGNNCC 5 cut(s) 916, 2089, 2144, 2281, 3105
NmuCI GTSAC 7 cut(s) 442, 733, 757, 937, 1400, 2754, 3284
NsiI ATGCAT 4 cut(s) 1479, 1862, 2567, 3087
NspI RCATGY 5 cut(s) 1049, 1860, 1864, 1972, 2874
OliI CACNNNNGTG 1 cut(s) 2736
PaeI GCATGC 1 cut(s) 1864
PaeR7I CTCGAG 1 cut(s) 978
PagI TCATGA 1 cut(s) 2695
PaqCI CACCTGC 1 cut(s) 3348
PciI ACATGT 1 cut(s) 2870
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 2 cut(s) 2547, 3345
PfeI GAWTC 6 cut(s) 427, 878, 2011, 2361, 2624, 3851
PflMI CCANNNNNTGG 1 cut(s) 3029
PfoI TCCNGGA 1 cut(s) 2051
PmaCI CACGTG 2 cut(s) 867, 947
PmlI CACGTG 2 cut(s) 867, 947
Ppu21I YACGTR 3 cut(s) 867, 947, 2636
PpuMI RGGWCCY 2 cut(s) 70, 338
PscI ACATGT 1 cut(s) 2870
PshAI GACNNNNGTC 1 cut(s) 3333
PshBI ATTAAT 5 cut(s) 968, 1331, 1832, 2646, 3618
PsiI TTATAA 2 cut(s) 1761, 2685
Psp124BI GAGCTC 1 cut(s) 979
Psp5II RGGWCCY 2 cut(s) 70, 338
Psp6I CCWGG 4 cut(s) 72, 487, 3257, 3979
PspCI CACGTG 2 cut(s) 867, 947
PspFI CCCAGC 1 cut(s) 4068
PspGI CCWGG 4 cut(s) 72, 487, 3257, 3979
PspN4I GGNNCC 5 cut(s) 916, 2089, 2144, 2281, 3105
PspOMI GGGCCC 1 cut(s) 2142
PspPI GGNCC 7 cut(s) 70, 338, 509, 767, 2142, 2143, 3999
PspPPI RGGWCCY 2 cut(s) 70, 338
PspXI VCTCGAGB 1 cut(s) 978
PstI CTGCAG 3 cut(s) 117, 2228, 2904
PstNI CAGNNNCTG 2 cut(s) 43, 3029
PsuI RGATCY 3 cut(s) 15, 2048, 3724
RsaI GTAC 6 cut(s) 318, 1233, 1733, 1811, 3105, 3197
RsaNI GTAC 6 cut(s) 317, 1232, 1732, 1810, 3104, 3196
RseI CAYNNNNRTG 5 cut(s) 472, 2082, 2694, 2736, 2875
SacI GAGCTC 1 cut(s) 979
Sau3AI GATC 9 cut(s) 15, 241, 571, 685, 805, 1816, 2048, 3724, 3907
Sau96I GGNCC 7 cut(s) 70, 338, 509, 767, 2142, 2143, 3999
ScaI AGTACT 3 cut(s) 1233, 1733, 3197
ScrFI CCNGG 5 cut(s) 74, 489, 2053, 3259, 3981
SduI GDGCHC 8 cut(s) 866, 979, 1746, 2146, 2223, 2733, 2977, 3875
SexAI ACCWGGT 2 cut(s) 487, 3979
SfcI CTRYAG 4 cut(s) 113, 1805, 2224, 2900
Sfr274I CTCGAG 1 cut(s) 978
SinI GGWCC 3 cut(s) 70, 338, 509
SlaI CTCGAG 1 cut(s) 978
SmiMI CAYNNNNRTG 5 cut(s) 472, 2082, 2694, 2736, 2875
SmlI CTYRAG 7 cut(s) 287, 689, 978, 1082, 1361, 2092, 2978
SmoI CTYRAG 7 cut(s) 287, 689, 978, 1082, 1361, 2092, 2978
SphI GCATGC 1 cut(s) 1864
SspI AATATT 3 cut(s) 1409, 1887, 2923
SspMI CTAG 3 cut(s) 1590, 2489, 3881
SstI GAGCTC 1 cut(s) 979
StyD4I CCNGG 5 cut(s) 72, 487, 2051, 3257, 3979
StyI CCWWGG 2 cut(s) 918, 2488
TaiI ACGT 7 cut(s) 869, 949, 1153, 1883, 1951, 2638, 4029
TaqI TCGA 7 cut(s) 237, 979, 1599, 2359, 2496, 2551, 2799
TaqII GACCGA 2 cut(s) 1419, 1784
TatI WGTACW 3 cut(s) 1231, 1731, 3195
TauI GCSGC 3 cut(s) 29, 149, 986
TfiI GAWTC 6 cut(s) 427, 878, 2011, 2361, 2624, 3851
TscAI CASTG 7 cut(s) 138, 198, 711, 2428, 2670, 2763, 4001
TseFI GTSAC 7 cut(s) 442, 733, 757, 937, 1400, 2754, 3284
Tsp45I GTSAC 7 cut(s) 442, 733, 757, 937, 1400, 2754, 3284
TspGWI ACGGA 3 cut(s) 896, 1774, 2573
TspRI CASTG 7 cut(s) 138, 198, 711, 2428, 2670, 2763, 4001
Van91I CCANNNNNTGG 1 cut(s) 3029
Vha464I CTTAAG 1 cut(s) 1082
VneI GTGCAC 1 cut(s) 2729
VpaK11BI GGWCC 3 cut(s) 70, 338, 509
VspI ATTAAT 5 cut(s) 968, 1331, 1832, 2646, 3618
XapI RAATTY 6 cut(s) 1069, 1313, 1444, 2483, 3145, 3730
XceI RCATGY 5 cut(s) 1049, 1860, 1864, 1972, 2874
XcmI CCANNNNNNNNNTGG 2 cut(s) 613, 3030
XhoI CTCGAG 1 cut(s) 978
XmaJI CCTAGG 1 cut(s) 2488
XmiI GTMKAC 1 cut(s) 1027
XmnI GAANNNNTTC 2 cut(s) 2547, 3345
XspI CTAG 3 cut(s) 1590, 2489, 3881
ZrmI AGTACT 3 cut(s) 1233, 1733, 3197
Zsp2I ATGCAT 4 cut(s) 1479, 1862, 2567, 3087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.