Rw0G001130

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00036
OG0000070
Physical Location & Seq
Forward (+)
120523 .. 124629
4107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001130.1

Sequence Viewer

Length: 4107 bp
ATGGCAGTGGGAGAGATCTTTCTTGCGGCATTCCTTCAATTGCTGCTGGACAGGTTAACGCCTGGGGAGATCCTTGGCTACTTTGGAAGCTTGGGAGGAGTTGGCAAAAAGCTCCAGAAATTGAGAGAGACACTTTCCGCAGTTAAAGCGGTGCTTTCCGATGCGGAGGAGAAGCAGCTGACGAACACGGCAGTGGATCTGTGGCTGAATGACCTCAAACACTTGGCTTATGATCTGGACGATCTACTCAACACCTTTTCTAATGAGATGTTAGAACGCGAGCAGCTCAAGCTTCACCAAACTTGCACAAGCAAGGTACGACGCTTCTTTACCAAAGTTCCTCATAAAGTCAAGTTCAATTTCAATATGAGCTCCGAAATAGACGACATTGCTAACTGCTTGCAAGACATATTTGACCGGAAAGAGAAACTCGGTTTGAAATATATTGAGCATACCTCTACTTCAACATCATCATCGCAAAGGACACCAAGTTCGTATGTGTTGGATGGACCTGTGGTTGGAAGAGATGAAGACACAAGAAAGATTGCGGAATTGTTGTCCAGAGGTGTTGATCCTTCTTCTCCCACCAATTATCAAGTTGTTGCCATTGTTGGTATGGGAGGACTCGGCAAGACAACGATTGCGGGAAAAGTCTTCAATGATGTAGATGCAATGGAAGTTGAGAAACGGTTTGATCTCAAGGTCTGGGTTTCAGTGTCGGATGACTTCAATCTTGAAACGGTGACGAGAACTATTTTTAAGAAAGTCACATCTCGGCCATGTGATATGGATGATTTCAGTCAACTTCAAGATAATCTGAGCAAGGCGATAGATGGTAAAAGGTTTTTGGTTGTTTTAGATGATGTCTGGAGCACATGTGATTATGACTCATGGACAAAACTGCAAGCTCCCTTCCGTGGTGGAGCTAAGGGAAGTAAGATAATGGTGACAACACGGGATGAAAAAGTTGCAATATTGATGGGAGCCCCCGCCGCTGAAGTTTATTATTTAAAGACTCTATCAGATGAAGGCTGTTTGCAAGTATTTGAGCAGCATGTTAACAATGACAGGCCACCGAATTTCGAGTTGCTTAAGAAGAAAATTGTTACGAACTGCAATGGATTGCCATTGGCTGCTAAAACTCTTGGTGGTGTTTTACGTTGTACCAAAACTGACATGTGGGAGGAAATACTGAATGATAAATTATGGAGTATATCAGATGGGAGTAATATACTCCCAGTACTGAGATTGAGTTATCATCATCTCCCTTCACCTTTGAAGCGGTGCTTTGCCTATTGCTCAATACTTCCCAATGACTATGAGTTTGGGAAAACCCAATTAATCCTTTTGTGGATGGCTGAGGGTTTCCTTGAGCAACCAGAAGGGGATAAAGCAATGGAAGATATCGGTGACGAATATTTTGGCGGACTACTGTCTCGGTCATTATTTCAAAACTCAGGCAAAGCCAGTTCATGCTATGTAATGCATGACCTTGTTGGTGATTTGGCCCGATGGGCTGCTGGAGGCACATTTTGCATATTGGAGGATAAACTGCATGGTAGATGTTCTGCAAAGACTCGTCACTTGACTTACATTTCTGGTAAGTTCGATGGGGTAAAAAGATTTGAGACATCTTTTGGAGCAAAACGCTTGCGGACTTTCCTACCACTTTCAATTGCTCGTGCTTATGAGAATTATCTAACTCGTTATGCTACTTATGATTTATTGCCACAATGGAAGTATTTGCGGGTGCTCTCCTTCAATGGCTATAAGCTGACTGAGCTGCCAGATTCCATACGTAAGTTGAGACATCTACGATACCTTGATCTTTCTCACACATTAATAATGAGTTTGCCTGAGTCAGTGTGCATGCTTTACAACTTACAGACGATAATATTAGACAATTGTTCAAAATTGAAGACACTACCATCAAACATGAGTAATTTATCTAATTTACGTCATCTCCACAATTCAAACACGCCTTCATTGGAAGAAATGCCTCCCCAAGTATGCCGGTTGACTCATCTGCGAACTTTGTATAATTTTGTGGTGGGGAAAAGTAGTGCATCAGGGATTGGAGAGATAGGGTCATTGCATCTTCGTGGGACCTTGAGCGTCAGAAGACTGGAAAATGTGATTGATGTTGGGGATGCGAAGAGGGCCCGAATAATGAACAAGGAAGGGTTGAATGCCTTGCAATTGGAATGGAGCGGCACAAATGAGAAGGAGTTAGAGGTGCTCTGCAGTTTAGAACCTCATAAAGAGCTTCTACAGCTCACCATCAAGGGCTACAATGGTTTCGAATTTTCAAAATGGATTGGACATCCTTCATTCTCTGATATGACATTCGTGAAGTTAGAGGATTGTAAAAACTGTCGATTCTTACCCCCTTTTGGCCAATTACCTTGTCTGAAAAGCCTTTGGATAAAAGGACTGGGCAGTGTTGAAAGTGTGGGTGCTGAAATTTATGGAGAGTGTACCTCGCCTTTTCCAGTGTTGGAGGCCCTGAAGTTCGAGGATATGCAAAATTGGAAAGAGTGGCTTCCTTGCAAAAGAGATGAAGAAATTCGAGTTTTCCCATGGTTGAAAAAGCTTTCCATCCTTAGTTGCCCCATATTGAAAGGTTGGTTGCCCAAGAACATGGATTCATTATCAGAGCTGTGTATTGTTGAATGTGAAGAGCTAGTGGTTTCAATTGCCAATTATAAACATATACGTGAGTTGAGCATAAATGGTTGTAAAAGGCTAGTGCACAAAAGTGGAGTTAAGTTTGAGTTACTGGAGGATATGGGGATTTCAAGTATACCAGAGTTCAGACTCAAAATAGATGGGTTCATCAGAGGATTAACGAAGCTTCAAAGATTGTCGATTACTGGTTGTGAACAATTAACATGTTTGTGGGAGAACGAGGATAGATGGCTGCAGCGTCGGATTTCTAATATTATTGGAGGCAACATCTCTGACTCCCCCTCTCACTTTATTCAAGAACTGAGAGCACTCAAGAAACTTGTGTTAACTGGATGCTCAAGTCTAATTTCTCTTCCAGAAGCTGGTTTGCCTCCTTGTCTTGAATATGTAAGGATGGAGTCGTGTAATTCTTTGACGCATTTTGTAAGGTATCAGGTACCGCCAAGCATAAATAGAATAGTGATAGCAAAATGTCAAAATTTGATAGTATTAGTGAAGGAGGGGGAACTAGAGGGTTATGCATCCTCTTCTTGTTTGGAACACTTGGAGGTAACAGAGTGTGCATCTTTGACATCCTTATCAGGCAAAGGAGGCCGACTACCCAGAACGCTCAAATATCTAGAGATAAGTGACTGTGAACAATTGGAGTCAATAATAAAAACATTCCCTGAGGACACTTGTCTTGAAGATCTTAGGATACTGAGGTGTGCAAATCTCAAATCCTTACCAGAGGGGCTATGCCATCTCTCCATTCTTAGCAGGTTACTTTTACGTCATTGTGGAAGTCTCGTTTCCTTCCCGAGAGGAGGGTTGCCATCCAACCTGACATACTTGGAAGTCTTGTTTTGTGATCAATTGGAAGCCCTCCCGAGAGGCATGGACAACCTCAGCTCTCTTGAGACTTTGTTTTTGGGATACTGTGGAGGTTTGGCATCCATTCTAGAAGAGGGTTTCCCACCCAACCTAACTGACCTAAATATTGTCAATCCTAGAAGCTGCAAGCCTCTCTCAGAGTGGGGGCTTCACCACTTGGACAGACTCACCTCTCTTGAAGAATTGGATATCGCTGGTGTAGATCCAGATCTGGTGTCATTTCCGCCAGAGGAGGTGCTGCTCCCTAAATCTCTCATTAAACTCACCATTGACGACTTCCCAAATCTGAAGCGCCTGTCATCCCTTCAGTCACTCACCTCTCTTGTATCCCTTTCAATTGATGATTGCCCAAAGCTAGCATCTATTATTCCAGAGAAAGAGGATCATCTGCCTCTTTCGCTTACACAGCTTCGCATCCATCATGGCTGTCCGCTGCTCACAACGAAATACCAGCCAGGAAAAGGACGACACTGGCCCAAAGAAATTGCCCACATCCCTTACGTTTATGTTGGAGACTTCTTTGACGAAGCCGAAGCCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1368

Amino Acids

154.04

Weight (kDa)

6.2

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 100 1.5e-18 Rx N-terminal domain
NB-ARC PF00931 180 - 355 1.5e-38 NB-ARC domain
WHD_DRP PF23559 435 - 503 1.3e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 576 - 842 5.4e-23 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 693 - 811 2.5e-31 R13L1/DRL21 LRRs
LRR_14 PF23598 1100 - 1300 1e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2706
Acc36I ACCTGC 1 cut(s) 3438
Acc65I GGTACC 1 cut(s) 3124
AccB1I GGYRCC 1 cut(s) 3124
AccB7I CCANNNNNTGG 1 cut(s) 3050
AccBSI CCGCTC 1 cut(s) 2211
AccI GTMKAC 1 cut(s) 2803
AccII CGCG 1 cut(s) 279
AclWI GGATC 5 cut(s) 64, 204, 566, 3758, 3951
AcoI YGGCCR 2 cut(s) 776, 2395
AcsI RAATTY 5 cut(s) 1078, 2303, 2463, 2565, 3166
AcuI CTGAAG 4 cut(s) 1017, 2528, 3851, 3869
AfaI GTAC 5 cut(s) 318, 1165, 1242, 2479, 3126
AfiI CCNNNNNNNGG 6 cut(s) 518, 917, 2393, 3050, 3494, 4022
AflII CTTAAG 1 cut(s) 1091
AflIII ACRYGT 3 cut(s) 875, 1176, 2891
AjnI CCWGG 2 cut(s) 61, 4015
AleI CACNNNNGTG 2 cut(s) 191, 2757
AloI GAACNNNNNNTCC 2 cut(s) 475, 507
Alw21I GWGCWC 6 cut(s) 374, 875, 1755, 2241, 2754, 2998
Alw26I GTCTC 7 cut(s) 122, 1440, 1622, 1801, 3479, 3581, 4068
Alw44I GTGCAC 1 cut(s) 2750
AlwI GGATC 5 cut(s) 64, 204, 566, 3758, 3951
AlwNI CAGNNNCTG 1 cut(s) 3050
Ama87I CYCGRG 2 cut(s) 3487, 3556
AoxI GGCC 8 cut(s) 776, 1070, 1506, 2160, 2395, 2502, 3280, 4034
ApaI GGGCCC 1 cut(s) 2164
ApaLI GTGCAC 1 cut(s) 2750
ApoI RAATTY 5 cut(s) 1078, 2303, 2463, 2565, 3166
ArsI GACNNNNNNTTYG 8 cut(s) 475, 507, 1307, 1339, 1403, 1435, 3580, 3612
AseI ATTAAT 2 cut(s) 1340, 1841
Asp700I GAANNNNTTC 1 cut(s) 2565
Asp718I GGTACC 1 cut(s) 3124
AspLEI GCGC 1 cut(s) 3855
AspS9I GGNCC 7 cut(s) 509, 1507, 2106, 2160, 2161, 2503, 4035
AsuII TTCGAA 1 cut(s) 2301
AsuNHI GCTAGC 1 cut(s) 3916
AvaI CYCGRG 2 cut(s) 3487, 3556
AvaII GGWCC 2 cut(s) 509, 2106
AxyI CCTNAGG 1 cut(s) 3357
BaeGI GKGCMC 2 cut(s) 2164, 2754
BaeI ACNNNNGTAYC 2 cut(s) 3377, 3410
BalI TGGCCA 1 cut(s) 2397
BanI GGYRCC 1 cut(s) 3124
BanII GRGCYC 3 cut(s) 374, 988, 2164
BauI CACGAG 1 cut(s) 1680
BbsI GAAGAC 4 cut(s) 537, 646, 1925, 2128
Bbv12I GWGCWC 6 cut(s) 374, 875, 1755, 2241, 2754, 2998
BbvCI CCTCAGC 2 cut(s) 1359, 3575
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 2 cut(s) 63, 4017
BciVI GTATCC 3 cut(s) 3378, 3596, 3898
BclI TGATCA 1 cut(s) 3538
BcoDI GTCTC 7 cut(s) 122, 1440, 1622, 1801, 3479, 3581, 4068
BfaI CTAG 7 cut(s) 2684, 2747, 3197, 3308, 3629, 3678, 3917
BfmI CTRYAG 3 cut(s) 2242, 2270, 2921
BfoI RGCGCY 1 cut(s) 3856
BfrI CTTAAG 1 cut(s) 1091
BfuAI ACCTGC 1 cut(s) 3438
BfuI GTATCC 3 cut(s) 3378, 3596, 3898
BglI GCCNNNNNGGC 1 cut(s) 1514
BglII AGATCT 3 cut(s) 15, 3376, 3769
BmcAI AGTACT 1 cut(s) 1242
Bme1390I CCNGG 2 cut(s) 63, 4017
Bme18I GGWCC 2 cut(s) 509, 2106
BmeT110I CYCGRG 2 cut(s) 3487, 3556
BmgT120I GGNCC 7 cut(s) 509, 1507, 2106, 2160, 2161, 2503, 4035
BmiI GGNNCC 4 cut(s) 985, 2107, 2162, 3126
BmrFI CCNGG 2 cut(s) 63, 4017
BmrI ACTGGG 2 cut(s) 1232, 2444
BmtI GCTAGC 1 cut(s) 3920
BmuI ACTGGG 2 cut(s) 1232, 2444
BoxI GACNNNNGTC 2 cut(s) 1432, 3366
BpiI GAAGAC 4 cut(s) 537, 646, 1925, 2128
BplI GAGNNNNNCTC 4 cut(s) 440, 472, 2465, 2497
BpmI CTGGAG 4 cut(s) 98, 889, 1542, 2801
Bpu10I CCTNAGC 3 cut(s) 927, 1359, 3575
Bpu14I TTCGAA 1 cut(s) 2301
BpuEI CTTGAG 7 cut(s) 272, 683, 1391, 2131, 2984, 3010, 3605
BsaAI YACGTR 2 cut(s) 1799, 2717
BsaBI GATNNNNATC 1 cut(s) 3768
BsaJI CCNNGG 4 cut(s) 62, 73, 916, 2579
BsaWI WCCGGW 1 cut(s) 417
BsaXI ACNNNNNCTCC 4 cut(s) 862, 892, 1947, 1977
Bsc4I CCNNNNNNNGG 6 cut(s) 518, 917, 2393, 3050, 3494, 4022
Bse118I RCCGGY 1 cut(s) 2013
Bse1I ACTGG 9 cut(s) 1238, 1467, 2130, 2439, 2492, 2784, 2878, 3022, 4037
Bse21I CCTNAGG 1 cut(s) 3357
Bse3DI GCAATG 5 cut(s) 387, 678, 1123, 1401, 2090
Bse8I GATNNNNATC 1 cut(s) 3768
BseBI CCWGG 2 cut(s) 63, 4017
BseDI CCNNGG 4 cut(s) 62, 73, 916, 2579
BseJI GATNNNNATC 1 cut(s) 3768
BseLI CCNNNNNNNGG 6 cut(s) 518, 917, 2393, 3050, 3494, 4022
BseMI GCAATG 5 cut(s) 387, 678, 1123, 1401, 2090
BseNI ACTGG 9 cut(s) 1238, 1467, 2130, 2439, 2492, 2784, 2878, 3022, 4037
BseRI GAGGAG 4 cut(s) 111, 182, 3507, 3806
BseSI GKGCMC 2 cut(s) 2164, 2754
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 8 cut(s) 778, 1072, 1508, 2162, 2397, 2504, 3282, 4036
BshNI GGYRCC 1 cut(s) 3124
BsiHKAI GWGCWC 6 cut(s) 374, 875, 1755, 2241, 2754, 2998
BsiHKCI CYCGRG 2 cut(s) 3487, 3556
BsiSI CCGG 2 cut(s) 418, 2014
BslFI GGGAC 1 cut(s) 2119
BslI CCNNNNNNNGG 6 cut(s) 518, 917, 2393, 3050, 3494, 4022
BsmAI GTCTC 7 cut(s) 122, 1440, 1622, 1801, 3479, 3581, 4068
BsmFI GGGAC 1 cut(s) 2119
BsmI GAATGC 2 cut(s) 29, 2194
BsnI GGCC 8 cut(s) 778, 1072, 1508, 2162, 2397, 2504, 3282, 4036
BsoBI CYCGRG 2 cut(s) 3487, 3556
Bsp119I TTCGAA 1 cut(s) 2301
Bsp120I GGGCCC 1 cut(s) 2160
Bsp1286I GDGCHC 8 cut(s) 374, 875, 988, 1755, 2164, 2241, 2754, 2998
Bsp19I CCATGG 1 cut(s) 2579
BspANI GGCC 8 cut(s) 778, 1072, 1508, 2162, 2397, 2504, 3282, 4036
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 985, 2107, 2162, 3126
BspMAI CTGCAG 2 cut(s) 2246, 2925
BspMI ACCTGC 1 cut(s) 3438
BspOI GCTAGC 1 cut(s) 3920
BspPI GGATC 5 cut(s) 64, 204, 566, 3758, 3951
BspQI GCTCTTC 1 cut(s) 2673
BspT104I TTCGAA 1 cut(s) 2301
BspT107I GGYRCC 1 cut(s) 3124
BspTI CTTAAG 1 cut(s) 1091
BsrBI CCGCTC 1 cut(s) 2211
BsrDI GCAATG 5 cut(s) 387, 678, 1123, 1401, 2090
BsrFI RCCGGY 1 cut(s) 2013
BsrI ACTGG 9 cut(s) 1238, 1467, 2130, 2439, 2492, 2784, 2878, 3022, 4037
BssAI RCCGGY 1 cut(s) 2013
BssECI CCNNGG 4 cut(s) 62, 73, 916, 2579
BssNAI GTATAC 1 cut(s) 2804
BssSI CACGAG 1 cut(s) 1680
BssT1I CCWWGG 2 cut(s) 73, 2579
Bst1107I GTATAC 1 cut(s) 2804
Bst2BI CACGAG 1 cut(s) 1680
Bst2UI CCWGG 2 cut(s) 63, 4017
Bst4CI ACNGT 6 cut(s) 690, 742, 1434, 2375, 3323, 3608
Bst6I CTCTTC 6 cut(s) 517, 2150, 2673, 3045, 3220, 3627
BstAFI CTTAAG 1 cut(s) 1091
BstAPI GCANNNNNTGC 1 cut(s) 1533
BstBAI YACGTR 2 cut(s) 1799, 2717
BstBI TTCGAA 1 cut(s) 2301
BstC8I GCNNGC 7 cut(s) 281, 401, 906, 1652, 1871, 3689, 3918
BstDSI CCRYGG 2 cut(s) 916, 2579
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 3856
BstHHI GCGC 1 cut(s) 3855
BstMAI GTCTC 7 cut(s) 122, 1440, 1622, 1801, 3479, 3581, 4068
BstNI CCWGG 2 cut(s) 63, 4017
BstNSI RCATGY 5 cut(s) 879, 1058, 1180, 1873, 2895
BstPAI GACNNNNGTC 2 cut(s) 1432, 3366
BstSCI CCNGG 2 cut(s) 61, 4015
BstSFI CTRYAG 3 cut(s) 2242, 2270, 2921
BstSLI GKGCMC 2 cut(s) 2164, 2754
BstSNI TACGTA 1 cut(s) 1799
BstUI CGCG 1 cut(s) 279
BstV2I GAAGAC 4 cut(s) 537, 646, 1925, 2128
BstX2I RGATCY 6 cut(s) 15, 69, 196, 3376, 3763, 3769
BstXI CCANNNNNNTGG 1 cut(s) 2641
BstYI RGATCY 6 cut(s) 15, 69, 196, 3376, 3763, 3769
BstZ17I GTATAC 1 cut(s) 2804
Bsu36I CCTNAGG 1 cut(s) 3357
BsuI GTATCC 3 cut(s) 3378, 3596, 3898
BsuRI GGCC 8 cut(s) 778, 1072, 1508, 2162, 2397, 2504, 3282, 4036
BtgI CCRYGG 2 cut(s) 916, 2579
BtgZI GCGATG 1 cut(s) 459
BtsI GCAGTG 3 cut(s) 12, 198, 2446
BtsIMutI CAGTG 7 cut(s) 12, 198, 720, 1869, 2446, 2499, 4030
BveI ACCTGC 1 cut(s) 3438
Cac8I GCNNGC 7 cut(s) 281, 401, 906, 1652, 1871, 3689, 3918
CaiI CAGNNNCTG 1 cut(s) 3050
CfoI GCGC 1 cut(s) 3855
Cfr10I RCCGGY 1 cut(s) 2013
Cfr13I GGNCC 7 cut(s) 509, 1507, 2106, 2160, 2161, 2503, 4035
CseI GACGC 4 cut(s) 330, 2104, 2915, 3112
Csp6I GTAC 5 cut(s) 317, 1164, 1241, 2478, 3125
CviQI GTAC 5 cut(s) 317, 1164, 1241, 2478, 3125
DraI TTTAAA 1 cut(s) 1011
EaeI YGGCCR 2 cut(s) 776, 2395
Eam1104I CTCTTC 6 cut(s) 517, 2150, 2673, 3045, 3220, 3627
EarI CTCTTC 6 cut(s) 517, 2150, 2673, 3045, 3220, 3627
EciI GGCGGA 2 cut(s) 1440, 3774
Ecl136II GAGCTC 1 cut(s) 372
Eco105I TACGTA 1 cut(s) 1799
Eco130I CCWWGG 2 cut(s) 73, 2579
Eco24I GRGCYC 3 cut(s) 374, 988, 2164
Eco32I GATATC 2 cut(s) 1405, 3751
Eco47I GGWCC 2 cut(s) 509, 2106
Eco53kI GAGCTC 1 cut(s) 372
Eco57I CTGAAG 4 cut(s) 1017, 2528, 3851, 3869
Eco81I CCTNAGG 1 cut(s) 3357
Eco88I CYCGRG 2 cut(s) 3487, 3556
EcoICRI GAGCTC 1 cut(s) 372
EcoO109I RGGNCCY 3 cut(s) 2106, 2160, 2503
EcoRII CCWGG 2 cut(s) 61, 4015
EcoRV GATATC 2 cut(s) 1405, 3751
EcoT14I CCWWGG 2 cut(s) 73, 2579
EcoT22I ATGCAT 2 cut(s) 1488, 3211
EcoT38I GRGCYC 3 cut(s) 374, 988, 2164
ErhI CCWWGG 2 cut(s) 73, 2579
FalI AAGNNNNNCTT 6 cut(s) 138, 170, 1271, 1303, 2526, 2558
FaqI GGGAC 1 cut(s) 2119
FauI CCCGC 3 cut(s) 637, 997, 1740
FbaI TGATCA 1 cut(s) 3538
FblI GTMKAC 1 cut(s) 2803
FriOI GRGCYC 3 cut(s) 374, 988, 2164
FspBI CTAG 7 cut(s) 2684, 2747, 3197, 3308, 3629, 3678, 3917
GlaI GCGC 1 cut(s) 3854
GsuI CTGGAG 4 cut(s) 98, 889, 1542, 2801
HaeII RGCGCY 1 cut(s) 3856
HaeIII GGCC 8 cut(s) 778, 1072, 1508, 2162, 2397, 2504, 3282, 4036
HapII CCGG 2 cut(s) 418, 2014
HgaI GACGC 4 cut(s) 330, 2104, 2915, 3112
HhaI GCGC 1 cut(s) 3855
Hin6I GCGC 1 cut(s) 3853
HinP1I GCGC 1 cut(s) 3853
HincII GTYRAC 5 cut(s) 57, 803, 1060, 2019, 3015
HindII GTYRAC 5 cut(s) 57, 803, 1060, 2019, 3015
HindIII AAGCTT 4 cut(s) 88, 290, 2591, 2852
HpaI GTTAAC 3 cut(s) 57, 1060, 3015
HpaII CCGG 2 cut(s) 418, 2014
Hpy99I CGWCG 2 cut(s) 324, 2931
HpyCH4III ACNGT 6 cut(s) 690, 742, 1434, 2375, 3323, 3608
HpyCH4IV ACGT 6 cut(s) 1159, 1798, 1957, 2716, 3460, 4062
HpySE526I ACGT 6 cut(s) 1159, 1798, 1957, 2716, 3460, 4062
HspAI GCGC 1 cut(s) 3853
KpnI GGTACC 1 cut(s) 3128
Ksp22I TGATCA 1 cut(s) 3538
KspAI GTTAAC 3 cut(s) 57, 1060, 3015
LguI GCTCTTC 1 cut(s) 2673
LmnI GCTCC 9 cut(s) 117, 377, 870, 913, 923, 983, 1640, 2208, 3807
MaeI CTAG 7 cut(s) 2684, 2747, 3197, 3308, 3629, 3678, 3917
MaeII ACGT 6 cut(s) 1159, 1798, 1957, 2716, 3460, 4062
MbiI CCGCTC 1 cut(s) 2211
MfeI CAATTG 8 cut(s) 38, 1674, 1903, 2198, 2694, 3329, 3542, 3897
MflI RGATCY 6 cut(s) 15, 69, 196, 3376, 3763, 3769
MhlI GDGCHC 8 cut(s) 374, 875, 988, 1755, 2164, 2241, 2754, 2998
MlsI TGGCCA 1 cut(s) 2397
MluNI TGGCCA 1 cut(s) 2397
MmeI TCCRAC 7 cut(s) 483, 499, 699, 2478, 2909, 3531, 4051
Mox20I TGGCCA 1 cut(s) 2397
Mph1103I ATGCAT 2 cut(s) 1488, 3211
MroXI GAANNNNTTC 1 cut(s) 2565
MscI TGGCCA 1 cut(s) 2397
MslI CAYNNNNRTG 5 cut(s) 191, 2100, 2715, 2757, 2896
Msp20I TGGCCA 1 cut(s) 2397
MspA1I CMGCKG 3 cut(s) 178, 995, 3994
MspCI CTTAAG 1 cut(s) 1091
MspI CCGG 2 cut(s) 418, 2014
MspR9I CCNGG 2 cut(s) 63, 4017
MunI CAATTG 8 cut(s) 38, 1674, 1903, 2198, 2694, 3329, 3542, 3897
Mva1269I GAATGC 2 cut(s) 29, 2194
MvaI CCWGG 2 cut(s) 63, 4017
MvnI CGCG 1 cut(s) 279
NcoI CCATGG 1 cut(s) 2579
NheI GCTAGC 1 cut(s) 3916
NlaIV GGNNCC 4 cut(s) 985, 2107, 2162, 3126
NmeAIII GCCGAG 2 cut(s) 606, 754
NmuCI GTSAC 7 cut(s) 742, 766, 946, 1409, 1580, 3317, 3870
NsiI ATGCAT 2 cut(s) 1488, 3211
NspI RCATGY 5 cut(s) 879, 1058, 1180, 1873, 2895
NspV TTCGAA 1 cut(s) 2301
OliI CACNNNNGTG 2 cut(s) 191, 2757
PaeI GCATGC 1 cut(s) 1873
PciI ACATGT 3 cut(s) 875, 1176, 2891
PciSI GCTCTTC 1 cut(s) 2673
PctI GAATGC 2 cut(s) 29, 2194
PdmI GAANNNNTTC 1 cut(s) 2565
PfeI GAWTC 3 cut(s) 1790, 2379, 2645
PflMI CCANNNNNTGG 1 cut(s) 3050
Ppu21I YACGTR 2 cut(s) 1799, 2717
PpuMI RGGWCCY 1 cut(s) 2106
PscI ACATGT 3 cut(s) 875, 1176, 2891
PshAI GACNNNNGTC 2 cut(s) 1432, 3366
PshBI ATTAAT 2 cut(s) 1340, 1841
PsiI TTATAA 1 cut(s) 2706
Psp124BI GAGCTC 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 2106
Psp6I CCWGG 2 cut(s) 61, 4015
PspGI CCWGG 2 cut(s) 61, 4015
PspN4I GGNNCC 4 cut(s) 985, 2107, 2162, 3126
PspOMI GGGCCC 1 cut(s) 2160
PspPI GGNCC 7 cut(s) 509, 1507, 2106, 2160, 2161, 2503, 4035
PspPPI RGGWCCY 1 cut(s) 2106
PstI CTGCAG 2 cut(s) 2246, 2925
PstNI CAGNNNCTG 1 cut(s) 3050
PsuI RGATCY 6 cut(s) 15, 69, 196, 3376, 3763, 3769
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 5 cut(s) 318, 1165, 1242, 2479, 3126
RsaNI GTAC 5 cut(s) 317, 1164, 1241, 2478, 3125
RseI CAYNNNNRTG 5 cut(s) 191, 2100, 2715, 2757, 2896
SacI GAGCTC 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 2673
Sau96I GGNCC 7 cut(s) 509, 1507, 2106, 2160, 2161, 2503, 4035
ScaI AGTACT 1 cut(s) 1242
ScrFI CCNGG 2 cut(s) 63, 4017
SduI GDGCHC 8 cut(s) 374, 875, 988, 1755, 2164, 2241, 2754, 2998
SfcI CTRYAG 3 cut(s) 2242, 2270, 2921
SfuI TTCGAA 1 cut(s) 2301
SinI GGWCC 2 cut(s) 509, 2106
SmiMI CAYNNNNRTG 5 cut(s) 191, 2100, 2715, 2757, 2896
SmlI CTYRAG 8 cut(s) 287, 698, 1091, 1370, 2110, 2999, 3025, 3584
SmoI CTYRAG 8 cut(s) 287, 698, 1091, 1370, 2110, 2999, 3025, 3584
SnaBI TACGTA 1 cut(s) 1799
SphI GCATGC 1 cut(s) 1873
SspI AATATT 5 cut(s) 975, 1418, 1896, 2941, 3667
SspMI CTAG 7 cut(s) 2684, 2747, 3197, 3308, 3629, 3678, 3917
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 61, 4015
StyI CCWWGG 2 cut(s) 73, 2579
TaaI ACNGT 6 cut(s) 690, 742, 1434, 2375, 3323, 3608
TaiI ACGT 6 cut(s) 1162, 1801, 1960, 2719, 3463, 4065
TaqI TCGA 7 cut(s) 1083, 1608, 2301, 2377, 2514, 2569, 2867
TaqII GACCGA 1 cut(s) 1428
TatI WGTACW 1 cut(s) 1240
TauI GCSGC 3 cut(s) 29, 995, 2214
TfiI GAWTC 3 cut(s) 1790, 2379, 2645
TscAI CASTG 7 cut(s) 12, 198, 720, 1869, 2446, 2499, 4037
TseFI GTSAC 7 cut(s) 742, 766, 946, 1409, 1580, 3317, 3870
Tsp45I GTSAC 7 cut(s) 742, 766, 946, 1409, 1580, 3317, 3870
TspGWI ACGGA 1 cut(s) 905
TspRI CASTG 7 cut(s) 12, 198, 720, 1869, 2446, 2499, 4037
Van91I CCANNNNNTGG 1 cut(s) 3050
Vha464I CTTAAG 1 cut(s) 1091
VneI GTGCAC 1 cut(s) 2750
VpaK11BI GGWCC 2 cut(s) 509, 2106
VspI ATTAAT 2 cut(s) 1340, 1841
XapI RAATTY 5 cut(s) 1078, 2303, 2463, 2565, 3166
XbaI TCTAGA 2 cut(s) 3307, 3628
XceI RCATGY 5 cut(s) 879, 1058, 1180, 1873, 2895
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 2803
XmnI GAANNNNTTC 1 cut(s) 2565
XspI CTAG 7 cut(s) 2684, 2747, 3197, 3308, 3629, 3678, 3917
ZrmI AGTACT 1 cut(s) 1242
Zsp2I ATGCAT 2 cut(s) 1488, 3211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.