Rh1AG041800

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000070
Physical Location & Seq
Reverse (-)
7275435 .. 7284059
8625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG041800.1

Sequence Viewer

Length: 627 bp
ATGGCAGTGGGAGAGATCTTTCTTGCGGCATTCGTTCAGTTGCTGCTGGAGAGGTTAACGCCTCAGGAGATTGTGGGCTACTTTGGAAGCTTGGGAGGAGCTGGCAAAAAGCTGCAGAAATGGAGAGAGACACTTTCCGCAGTTGCAGCGGTGCTTTCCGATGCGGAGGAGAAGCAGCTGACGAGCAAGGCAGTGGATCTGTGGCTGAATGACCTGAAACACTTGGCTTATGATCTGGACGATCTACTCAACACCTTTTCTAATGAGATGTTAGAACGCGAGCAGCTCAAGCTTCACCAAACTGGCACAAGCAAGACGTTAATATTAGAGAATTGTTCAAAATTGAAGACACTACCTTCAAACATGAGCAATTTATCTAATTTACGTCATCTCAACAATTCAAACATGCCTTCATTGGAAGAAATGCCTCCCAAACCTCACTCTCTCAGCGACGCCTTTCTTGACTCTCTTCGACTCACACAGTCACACTATCTCTCTCGGCCAGTGCCACCATTTTTGTTGAACGGCCAACCCACCCTGTCACCGCTTCTACCGCCGACCCAACCTCGCCGTTTCGATCTCTCCGATCCACTGTACGTAAAACCTTCTCTTCATTGTTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

208

Amino Acids

23.37

Weight (kDa)

6.07

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 99 1.3e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 279
AciI CCGC 6 cut(s) 26, 138, 149, 164, 545, 554
AclWI GGATC 2 cut(s) 204, 581
AcoI YGGCCR 2 cut(s) 500, 526
AcyI GRCGYC 1 cut(s) 453
AfaI GTAC 1 cut(s) 596
AgsI TTSAA 5 cut(s) 339, 346, 360, 402, 523
AluBI AGCT 6 cut(s) 90, 101, 112, 178, 286, 292
AluI AGCT 6 cut(s) 90, 101, 112, 178, 286, 292
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 2 cut(s) 204, 581
AlwNI CAGNNNCTG 1 cut(s) 43
AoxI GGCC 2 cut(s) 500, 526
ApeKI GCWGC 5 cut(s) 43, 112, 146, 175, 283
AsuHPI GGTGA 2 cut(s) 287, 534
AxyI CCTNAGG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 353
BbvI GCAGC 5 cut(s) 30, 99, 158, 187, 295
BceAI ACGGC 2 cut(s) 541, 555
BcoDI GTCTC 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 113
BglII AGATCT 1 cut(s) 15
BisI GCNGC 6 cut(s) 27, 44, 113, 147, 176, 284
BlsI GCNGC 6 cut(s) 28, 45, 114, 148, 177, 285
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 453
Bse1I ACTGG 2 cut(s) 307, 503
Bse21I CCTNAGG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 77, 460
BseNI ACTGG 2 cut(s) 307, 503
BseRI GAGGAG 2 cut(s) 111, 182
BseXI GCAGC 5 cut(s) 30, 99, 158, 187, 295
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 2 cut(s) 502, 528
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 2 cut(s) 502, 528
Bsp143I GATC 6 cut(s) 15, 196, 232, 241, 577, 586
BspACI CCGC 6 cut(s) 26, 138, 149, 164, 545, 554
BspANI GGCC 2 cut(s) 502, 528
BspCNI CTCAG 2 cut(s) 76, 459
BspFNI CGCG 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 2 cut(s) 204, 581
BsrI ACTGG 2 cut(s) 307, 503
BssMI GATC 6 cut(s) 15, 196, 232, 241, 577, 586
BssNI GRCGYC 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 483, 594
Bst6I CTCTTC 2 cut(s) 474, 615
BstACI GRCGYC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 598
BstC8I GCNNGC 2 cut(s) 103, 281
BstDEI CTNAG 2 cut(s) 63, 446
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 6 cut(s) 18, 199, 235, 244, 580, 589
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 6 cut(s) 15, 196, 232, 241, 577, 586
BstMWI GCNNNNNNNGC 3 cut(s) 146, 289, 553
BstNSI RCATGY 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 113
BstSNI TACGTA 1 cut(s) 598
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 5 cut(s) 30, 99, 158, 187, 295
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 2 cut(s) 15, 196
BstYI RGATCY 2 cut(s) 15, 196
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 2 cut(s) 502, 528
BtsI GCAGTG 2 cut(s) 12, 198
BtsIMutI CAGTG 4 cut(s) 12, 198, 510, 590
Cac8I GCNNGC 2 cut(s) 103, 281
CaiI CAGNNNCTG 1 cut(s) 43
CseI GACGC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 595
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 2 cut(s) 364, 406
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 2 cut(s) 63, 446
DpnI GATC 6 cut(s) 17, 198, 234, 243, 579, 588
DpnII GATC 6 cut(s) 15, 196, 232, 241, 577, 586
EaeI YGGCCR 2 cut(s) 500, 526
Eam1104I CTCTTC 2 cut(s) 474, 615
EarI CTCTTC 2 cut(s) 474, 615
Eco105I TACGTA 1 cut(s) 598
Eco81I CCTNAGG 1 cut(s) 63
FaeI CATG 2 cut(s) 367, 409
FaiI YATR 3 cut(s) 231, 365, 407
FatI CATG 2 cut(s) 363, 405
Fnu4HI GCNGC 6 cut(s) 27, 44, 113, 147, 176, 284
Fsp4HI GCNGC 6 cut(s) 27, 44, 113, 147, 176, 284
GluI GCNGC 6 cut(s) 27, 44, 113, 147, 176, 284
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 2 cut(s) 502, 528
HgaI GACGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 2 cut(s) 367, 409
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 2 cut(s) 88, 290
HinfI GANTC 2 cut(s) 464, 474
HpaI GTTAAC 1 cut(s) 57
HphI GGTGA 2 cut(s) 287, 534
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 160, 586
Hpy188III TCNNGA 3 cut(s) 65, 236, 461
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 3 cut(s) 366, 420, 615
HpyCH4III ACNGT 2 cut(s) 483, 594
HpyCH4IV ACGT 3 cut(s) 317, 385, 597
HpyCH4V TGCA 2 cut(s) 115, 146
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 289, 553
HpyF3I CTNAG 2 cut(s) 63, 446
HpySE526I ACGT 3 cut(s) 317, 385, 597
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 2 cut(s) 367, 409
KspAI GTTAAC 1 cut(s) 57
Kzo9I GATC 6 cut(s) 15, 196, 232, 241, 577, 586
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 8 cut(s) 32, 50, 87, 221, 227, 288, 516, 551
Lsp1109I GCAGC 5 cut(s) 30, 99, 158, 187, 295
LweI GCATC 1 cut(s) 151
MaeII ACGT 3 cut(s) 317, 385, 597
MaeIII GTNAC 2 cut(s) 483, 540
MalI GATC 6 cut(s) 17, 198, 234, 243, 579, 588
MboI GATC 6 cut(s) 15, 196, 232, 241, 577, 586
MboII GAAGA 4 cut(s) 358, 431, 461, 602
MflI RGATCY 2 cut(s) 15, 196
MluCI AATT 5 cut(s) 331, 341, 370, 379, 397
MlyI GAGTC 2 cut(s) 458, 468
MnlI CCTC 7 cut(s) 45, 72, 89, 160, 438, 447, 576
MseI TTAA 2 cut(s) 56, 320
MspA1I CMGCKG 2 cut(s) 149, 178
Mva1269I GAATGC 1 cut(s) 29
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 3 cut(s) 146, 289, 553
NdeII GATC 6 cut(s) 15, 196, 232, 241, 577, 586
NlaIII CATG 2 cut(s) 367, 409
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 2 cut(s) 483, 540
NspI RCATGY 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 582
PctI GAATGC 1 cut(s) 29
PkrI GCNGC 6 cut(s) 28, 45, 114, 148, 177, 285
PleI GAGTC 2 cut(s) 458, 468
PpsI GAGTC 2 cut(s) 458, 468
Ppu21I YACGTR 1 cut(s) 598
PstI CTGCAG 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 43
PsuI RGATCY 2 cut(s) 15, 196
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SaqAI TTAA 2 cut(s) 56, 320
SatI GCNGC 6 cut(s) 27, 44, 113, 147, 176, 284
Sau3AI GATC 6 cut(s) 15, 196, 232, 241, 577, 586
SchI GAGTC 2 cut(s) 458, 468
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
SnaBI TACGTA 1 cut(s) 598
Sse9I AATT 5 cut(s) 331, 341, 370, 379, 397
SsiI CCGC 6 cut(s) 26, 138, 149, 164, 545, 554
SspI AATATT 1 cut(s) 324
TaaI ACNGT 2 cut(s) 483, 594
TaiI ACGT 3 cut(s) 320, 388, 600
TaqI TCGA 2 cut(s) 472, 576
TasI AATT 5 cut(s) 331, 341, 370, 379, 397
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 56, 320
Tru9I TTAA 2 cut(s) 56, 320
TscAI CASTG 4 cut(s) 12, 198, 510, 597
TseFI GTSAC 2 cut(s) 483, 540
TseI GCWGC 5 cut(s) 43, 112, 146, 175, 283
Tsp45I GTSAC 2 cut(s) 483, 540
TspDTI ATGAA 2 cut(s) 402, 602
TspRI CASTG 4 cut(s) 12, 198, 510, 597
XceI RCATGY 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.