Rroxscaffold_2G00113190

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
38717712 .. 38724180
6469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113190.1

Sequence Viewer

Length: 2721 bp
ATGCAGTTGATCCTCCTATGGATGGCAGAGGATTTAATTCCACAACCGAAAGACAACAAACAATTGGAAGATTTAGGTGCTGATTATTTTCGGGAGTTGTTATCTAGATCATTCTTTCAAAATTCAAGCAAAAGCAATGCACGATATGTAATGCATGATCTCATTAGTGATTTGGCAAGAAAGATCACAGGAGCGATATGTTTTAGATTGGAGGACGCACAGAATAGTTACAGGCAAATTAGATCTTCTCCGAAGGCTCGTCAATTGTCTTACATTTCTGGCATATCTGATGGTGTTCAAAAATTCGAAGCCTTTGATCAAGTCAAACATCTGCGGACTTTTCTACCATTTACTGTTTCAACACTGCCAGGTTTTCGACATTGTTTGACTCGTAAGATCACTCATGATTTAGTGCCAAAACTGCCATACCTAAGGGTGTTATCTTTTAATGGCTATGGAATCACAGATCTGCCAAAATCGATAGGGGAGTTGAAGTCTTTACGGTATCTTGATGTTTCTCATGCAGTAATAAAGGATTTTCCTGAATCTGCCAGTACTCTTTACAACTTACAAACATTGATAGTAAATGATTGTAATTTTTTGAGAACACTACCTACAAACATGAGGAATCTAATCAGTTTGCGTCATCTTCACAATTCGAAACTATATTTGTTGGAAAGAATGCCTGCCCAACTTGGTAGTCTGACAAATCTGCAAACATTGAATAATTTTCTGGTGGCCGAAAGTGGAGATTCAGGGATAAGTCAGATCGGTCCCCTATTGCATCTCCGGGGGACATTGCATCTTTCAAGATTGGAGAATGTGAATGATGCGGAGGATGCAAAGATGGCCAACTGTATTAAGAAGGACAAGCTTGATGAATTGGTACTCGAATGGAGTGAAAACAGAGAAATGAGACTAGATGTACTTGACATGTTGCAACCTCATAAAAACCTCAAAATGCTCACAGTAAGGGGTTTCAGGGGATTGCAATTTTCAGCATGGATTGGAGATTCTTTATTCTCTAAAATGGTGGTGGTGAGGTTAGAAAATTGTAGAAACTGCCAGCTCTTGCCACCACTTGGGCAATTGTGTTCTCTGAAAGAGCTATATATAAGAAAAATGCCTGGAGTGGTAAATGTAGGGCAGGAGTTTTATGGGGAGGGTAGCTTGCCTTTCCCTCGATTAGAAATTCTGGAATTTGAGCTGATGGACCTTTGGAAGGAGTGGTTTTCCTATCAACAAGATCAGGGACTTGAAACTTTCCCTTGCTTGAAAATGCTTTCCATCAAAAACTGCTGGAAACTGCAGGGTCGGTTACCTGAGAACCTTCATTTACTGTCCACGCTTGTGATTCATCAATGTGAGCAGCTAGTGGTTTCAATCACAAATTGTAAAAGCCTTTGTGAATTGAAGATAAATAATTGCAGACAGGTGATCCATAGAAGTGCTGCTCAGTTTGAGTCACTAGAGGCACTAGAGCTTTCAAGTATTTCAGAGTTCGTACTCCAAGCAGAGGAATTTGTGAGAGGGTTGACAAAAACTAAAGATCTGAAGATTACAGTTTCTAAGAAGCCGACATTTTTAAGAAAGAATGAGGATAGATTACTGGAAAACCCGATTTCTGTTCCTCATTTCTTCATTGGAAGCAACTCCCACCTTGTTTTGTTTCATTACTTATCATCACTTCAGAAACTTCACATATACGACTGCTCTAGTATAATTTCTTTTGAAGAGGTTTGTTTTCCACCTTTTCTTAAAGAAATAGAGATTGTGCGTTGCCATTCTCTTGTATATTTCGCAAGATATCAGAATGCCCCACAACTGAGAAGATTAAGTATCCGGGTTTGCGAAAACTTTAAATCATTAGTAGAGATTGAAGTAGGAAGTACTCAGACTTCATCTTATTGGTCTTCTTCATCTTCTGCTTCAACTCCTTGCCTGATGATGCAAAAGGAGACATCTAGTCTCGAGGACTTGGAAATAAATAGTTGTCCCTCTATGACGTCCTTAGGCTACCTACTAATCAGGACGCTTAAACATCTTCAGATATCGGACTGTGCAAATATGGAGAAAATAGTCGATAGGTTCCATGATAACATTCTTCTTGAAGAAATTCAATTATGGAGATGCCCAAATCTTAAATCCTTCCCGGAGGGTCTATGTCACCTGACCAATCTTCTATCATTATCGATCATAAACTGTGAAAGTTTTGTTTCCTTTCCCAGAGAAGTGTTTCCAAGAAGCGCCTTCAACTTGAGGATGATTGAGATTTCCAACTGCCATAATTTGGAGGGCATCCCCAAAGGCATGCAGAACCTGAACTCTCTTCAGGACTTTCATGGATTGGCGTCTTTTCTAGAAGAGGGTTTTCCCACCAATCTAACGAGACTAGTAGTTTGGAAAGTCAAGAATTGCAAGGCACTGTTGGAGTTGGGATTGCACAGTCTCACCTCTCTTAGAGAGTTGTATATCAGTGGTGAAGATCCAGATTTGGTGTCCTTTCCACCTGAAGACAAGATGACACCACCCCTGCCCAAATCTCTCATTCAAATGACAATCGCCGACTTCCCAAATCTTACTAAACTCAGCAAGGGCTTTCAATTCCTCACCTCTCTTGAATATCTTGAAGTATCTAGTTGTCCTAAACTAGCATCAATTCCAGAGGGGGTTTGCCTCTTTCACTTACTCGACTTTATGTCATTCAATGTCCTCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

906

Amino Acids

103.67

Weight (kDa)

6.8

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 2 - 59 1.2e-19 Disease resistance protein Winged helix domain
LRR_14 PF23598 127 - 220 1.8e-13 Leucine-rich repeat region
LRR_14 PF23598 190 - 412 8.5e-10 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 254 - 375 1.8e-32 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2009
AccB7I CCANNNNNTGG 2 cut(s) 1082, 2290
AciI CCGC 2 cut(s) 334, 833
AclWI GGATC 3 cut(s) 4, 1432, 2480
AcoI YGGCCR 2 cut(s) 738, 849
AcsI RAATTY 6 cut(s) 121, 302, 1191, 1199, 1520, 2115
AcuI CTGAAG 5 cut(s) 1574, 1673, 2030, 2315, 2532
AcyI GRCGYC 2 cut(s) 2006, 2351
AfaI GTAC 5 cut(s) 556, 888, 927, 1506, 1891
AfiI CCNNNNNNNGG 5 cut(s) 22, 1082, 1222, 1516, 2290
AflIII ACRYGT 1 cut(s) 933
AhdI GACNNNNNGTC 2 cut(s) 1965, 2698
AhlI ACTAGT 1 cut(s) 2392
AjnI CCWGG 2 cut(s) 367, 1126
AleI CACNNNNGTG 1 cut(s) 1349
AluBI AGCT 7 cut(s) 874, 1069, 1108, 1170, 1207, 1372, 1483
AluI AGCT 7 cut(s) 874, 1069, 1108, 1170, 1207, 1372, 1483
Alw26I GTCTC 5 cut(s) 910, 1952, 1973, 2383, 2453
AlwI GGATC 3 cut(s) 4, 1432, 2480
AlwNI CAGNNNCTG 1 cut(s) 2320
Ama87I CYCGRG 1 cut(s) 1970
AoxI GGCC 2 cut(s) 738, 849
ApeKI GCWGC 2 cut(s) 1369, 1451
ApoI RAATTY 6 cut(s) 121, 302, 1191, 1199, 1520, 2115
ArsI GACNNNNNNTTYG 2 cut(s) 2382, 2414
Asp700I GAANNNNTTC 2 cut(s) 2115, 2235
AspLEI GCGC 1 cut(s) 2249
AspS9I GGNCC 2 cut(s) 773, 1213
AsuC2I CCSGG 3 cut(s) 791, 1844, 2153
AsuHPI GGTGA 6 cut(s) 1051, 1447, 2159, 2443, 2492, 2602
AsuII TTCGAA 2 cut(s) 306, 659
AvaI CYCGRG 1 cut(s) 1970
AvaII GGWCC 2 cut(s) 773, 1213
AxyI CCTNAGG 2 cut(s) 431, 2011
BalI TGGCCA 1 cut(s) 851
BarI GAAGNNNNNNTAC 2 cut(s) 1882, 1914
BbsI GAAGAC 2 cut(s) 1905, 2520
BbvI GCAGC 2 cut(s) 1381, 1438
BccI CCATC 5 cut(s) 16, 284, 841, 1204, 1295
BciT130I CCWGG 2 cut(s) 369, 1128
BciVI GTATCC 1 cut(s) 1850
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 3 cut(s) 791, 1844, 2153
BcoDI GTCTC 5 cut(s) 910, 1952, 1973, 2383, 2453
BcuI ACTAGT 1 cut(s) 2392
BfmI CTRYAG 1 cut(s) 1307
BfoI RGCGCY 1 cut(s) 2250
BfuI GTATCC 1 cut(s) 1850
BglII AGATCT 3 cut(s) 242, 466, 1549
BisI GCNGC 2 cut(s) 1370, 1452
BlsI GCNGC 2 cut(s) 1371, 1453
BmcAI AGTACT 2 cut(s) 556, 1891
Bme1390I CCNGG 5 cut(s) 369, 791, 1128, 1844, 2153
Bme18I GGWCC 2 cut(s) 773, 1213
BmeRI GACNNNNNGTC 2 cut(s) 1965, 2698
BmeT110I CYCGRG 1 cut(s) 1970
BmgT120I GGNCC 2 cut(s) 773, 1213
BmiI GGNNCC 2 cut(s) 775, 2090
BmrFI CCNGG 5 cut(s) 369, 791, 1128, 1844, 2153
BmsI GCATC 8 cut(s) 793, 811, 820, 829, 1938, 2120, 2307, 2663
BpiI GAAGAC 2 cut(s) 1905, 2520
BpmI CTGGAG 1 cut(s) 1149
Bpu14I TTCGAA 2 cut(s) 306, 659
BpuEI CTTGAG 1 cut(s) 2278
BpuMI CCSGG 3 cut(s) 791, 1844, 2153
Bsa29I ATCGAT 2 cut(s) 479, 2192
BsaHI GRCGYC 2 cut(s) 2006, 2351
BsaJI CCNNGG 1 cut(s) 790
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 1082, 1222, 1516, 2290
Bse1I ACTGG 2 cut(s) 552, 1614
Bse21I CCTNAGG 2 cut(s) 431, 2011
Bse3DI GCAATG 2 cut(s) 142, 797
BseBI CCWGG 2 cut(s) 369, 1128
BseCI ATCGAT 2 cut(s) 479, 2192
BseDI CCNNGG 1 cut(s) 790
BseGI GGATG 4 cut(s) 27, 844, 2268, 2298
BseLI CCNNNNNNNGG 5 cut(s) 22, 1082, 1222, 1516, 2290
BseMI GCAATG 2 cut(s) 142, 797
BseMII CTCAG 5 cut(s) 1314, 1469, 1817, 1907, 2602
BseNI ACTGG 2 cut(s) 552, 1614
BseXI GCAGC 2 cut(s) 1381, 1438
BshFI GGCC 2 cut(s) 740, 851
BshVI ATCGAT 2 cut(s) 479, 2192
BsiHKCI CYCGRG 1 cut(s) 1970
BsiSI CCGG 3 cut(s) 790, 1843, 2153
BslFI GGGAC 4 cut(s) 759, 808, 1266, 1980
BslI CCNNNNNNNGG 5 cut(s) 22, 1082, 1222, 1516, 2290
BsmAI GTCTC 5 cut(s) 910, 1952, 1973, 2383, 2453
BsmFI GGGAC 4 cut(s) 759, 808, 1266, 1980
BsmI GAATGC 2 cut(s) 687, 1819
BsnI GGCC 2 cut(s) 740, 851
BsoBI CYCGRG 1 cut(s) 1970
Bsp119I TTCGAA 2 cut(s) 306, 659
BspACI CCGC 2 cut(s) 334, 833
BspANI GGCC 2 cut(s) 740, 851
BspCNI CTCAG 5 cut(s) 1315, 1468, 1818, 1906, 2601
BspDI ATCGAT 2 cut(s) 479, 2192
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 775, 2090
BspMAI CTGCAG 1 cut(s) 1311
BspPI GGATC 3 cut(s) 4, 1432, 2480
BspT104I TTCGAA 2 cut(s) 306, 659
BsrDI GCAATG 2 cut(s) 142, 797
BsrI ACTGG 2 cut(s) 552, 1614
BssECI CCNNGG 1 cut(s) 790
BssNI GRCGYC 2 cut(s) 2006, 2351
Bst2UI CCWGG 2 cut(s) 369, 1128
Bst6I CTCTTC 3 cut(s) 1728, 2334, 2358
BstACI GRCGYC 2 cut(s) 2006, 2351
BstBI TTCGAA 2 cut(s) 306, 659
BstC8I GCNNGC 4 cut(s) 687, 1067, 1172, 2312
BstDEI CTNAG 9 cut(s) 431, 1323, 1455, 1569, 1826, 1893, 2011, 2459, 2588
BstEII GGTNACC 1 cut(s) 1317
BstENI CCTNNNNNAGG 1 cut(s) 1220
BstF5I GGATG 4 cut(s) 27, 844, 2268, 2298
BstH2I RGCGCY 1 cut(s) 2250
BstHHI GCGC 1 cut(s) 2249
BstMAI GTCTC 5 cut(s) 910, 1952, 1973, 2383, 2453
BstMWI GCNNNNNNNGC 3 cut(s) 421, 839, 848
BstNI CCWGG 2 cut(s) 369, 1128
BstNSI RCATGY 2 cut(s) 937, 2314
BstPI GGTNACC 1 cut(s) 1317
BstSCI CCNGG 5 cut(s) 367, 789, 1126, 1842, 2151
BstSFI CTRYAG 1 cut(s) 1307
BstV1I GCAGC 2 cut(s) 1381, 1438
BstV2I GAAGAC 2 cut(s) 1905, 2520
BstX2I RGATCY 4 cut(s) 242, 466, 1549, 2485
BstYI RGATCY 4 cut(s) 242, 466, 1549, 2485
Bsu15I ATCGAT 2 cut(s) 479, 2192
Bsu36I CCTNAGG 2 cut(s) 431, 2011
BsuI GTATCC 1 cut(s) 1850
BsuRI GGCC 2 cut(s) 740, 851
BsuTUI ATCGAT 2 cut(s) 479, 2192
BtsCI GGATG 4 cut(s) 27, 844, 2268, 2298
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 3 cut(s) 362, 2423, 2482
Cac8I GCNNGC 4 cut(s) 687, 1067, 1172, 2312
CaiI CAGNNNCTG 1 cut(s) 2320
CciI TCATGA 1 cut(s) 403
CfoI GCGC 1 cut(s) 2249
Cfr13I GGNCC 2 cut(s) 773, 1213
ClaI ATCGAT 2 cut(s) 479, 2192
CseI GACGC 4 cut(s) 224, 632, 2041, 2340
Csp6I GTAC 5 cut(s) 555, 887, 926, 1505, 1890
CviAII CATG 9 cut(s) 155, 404, 521, 622, 934, 1002, 2093, 2311, 2342
CviQI GTAC 5 cut(s) 555, 887, 926, 1505, 1890
DdeI CTNAG 9 cut(s) 431, 1323, 1455, 1569, 1826, 1893, 2011, 2459, 2588
DraI TTTAAA 1 cut(s) 1861
DriI GACNNNNNGTC 2 cut(s) 1965, 2698
EaeI YGGCCR 2 cut(s) 738, 849
Eam1104I CTCTTC 3 cut(s) 1728, 2334, 2358
Eam1105I GACNNNNNGTC 2 cut(s) 1965, 2698
EarI CTCTTC 3 cut(s) 1728, 2334, 2358
Eco32I GATATC 2 cut(s) 1808, 2052
Eco47I GGWCC 2 cut(s) 773, 1213
Eco57I CTGAAG 5 cut(s) 1574, 1673, 2030, 2315, 2532
Eco81I CCTNAGG 2 cut(s) 431, 2011
Eco88I CYCGRG 1 cut(s) 1970
Eco91I GGTNACC 1 cut(s) 1317
EcoNI CCTNNNNNAGG 1 cut(s) 1220
EcoO65I GGTNACC 1 cut(s) 1317
EcoRII CCWGG 2 cut(s) 367, 1126
EcoRV GATATC 2 cut(s) 1808, 2052
EcoT22I ATGCAT 1 cut(s) 156
FaeI CATG 9 cut(s) 158, 407, 524, 625, 937, 1005, 2096, 2314, 2345
FaqI GGGAC 4 cut(s) 759, 808, 1266, 1980
FatI CATG 9 cut(s) 154, 403, 520, 621, 933, 1001, 2092, 2310, 2341
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 1370, 1452
FokI GGATG 4 cut(s) 34, 851, 2275, 2285
Fsp4HI GCNGC 2 cut(s) 1370, 1452
GlaI GCGC 1 cut(s) 2248
GluI GCNGC 2 cut(s) 1370, 1452
GsuI CTGGAG 1 cut(s) 1149
HaeII RGCGCY 1 cut(s) 2250
HaeIII GGCC 2 cut(s) 740, 851
HapII CCGG 3 cut(s) 790, 1843, 2153
HgaI GACGC 4 cut(s) 224, 632, 2041, 2340
HhaI GCGC 1 cut(s) 2249
Hin1I GRCGYC 2 cut(s) 2006, 2351
Hin1II CATG 9 cut(s) 158, 407, 524, 625, 937, 1005, 2096, 2314, 2345
Hin6I GCGC 1 cut(s) 2247
HinP1I GCGC 1 cut(s) 2247
HincII GTYRAC 1 cut(s) 1536
HindII GTYRAC 1 cut(s) 1536
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 8 cut(s) 388, 459, 545, 628, 752, 1013, 1354, 1463
HpaII CCGG 3 cut(s) 790, 1843, 2153
HphI GGTGA 6 cut(s) 1051, 1447, 2159, 2443, 2492, 2602
Hpy166II GTNNAC 2 cut(s) 1344, 1536
Hpy8I GTNNAC 2 cut(s) 1344, 1536
HpyAV CCTTC 6 cut(s) 247, 859, 1216, 1340, 2158, 2260
HpyCH4IV ACGT 1 cut(s) 2006
HpyF10VI GCNNNNNNNGC 3 cut(s) 421, 839, 848
HpyF3I CTNAG 9 cut(s) 431, 1323, 1455, 1569, 1826, 1893, 2011, 2459, 2588
HpySE526I ACGT 1 cut(s) 2006
Hsp92I GRCGYC 2 cut(s) 2006, 2351
Hsp92II CATG 9 cut(s) 158, 407, 524, 625, 937, 1005, 2096, 2314, 2345
HspAI GCGC 1 cut(s) 2247
Ksp22I TGATCA 1 cut(s) 316
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 2 cut(s) 1381, 1438
LweI GCATC 8 cut(s) 793, 811, 820, 829, 1938, 2120, 2307, 2663
MaeII ACGT 1 cut(s) 2006
MaeIII GTNAC 4 cut(s) 227, 1317, 1464, 2165
MfeI CAATTG 3 cut(s) 62, 263, 1088
MflI RGATCY 4 cut(s) 242, 466, 1549, 2485
MlsI TGGCCA 1 cut(s) 851
MluNI TGGCCA 1 cut(s) 851
MlyI GAGTC 2 cut(s) 382, 1472
MmeI TCCRAC 3 cut(s) 654, 2301, 2409
Mox20I TGGCCA 1 cut(s) 851
Mph1103I ATGCAT 1 cut(s) 156
MroXI GAANNNNTTC 2 cut(s) 2115, 2235
MscI TGGCCA 1 cut(s) 851
MseI TTAA 9 cut(s) 35, 447, 861, 1586, 1758, 1835, 1860, 2037, 2142
MslI CAYNNNNRTG 4 cut(s) 1349, 1362, 1446, 2552
Msp20I TGGCCA 1 cut(s) 851
MspI CCGG 3 cut(s) 790, 1843, 2153
MspR9I CCNGG 5 cut(s) 369, 791, 1128, 1844, 2153
MunI CAATTG 3 cut(s) 62, 263, 1088
Mva1269I GAATGC 2 cut(s) 687, 1819
MvaI CCWGG 2 cut(s) 369, 1128
MwoI GCNNNNNNNGC 3 cut(s) 421, 839, 848
NciI CCSGG 3 cut(s) 791, 1844, 2153
NlaIII CATG 9 cut(s) 158, 407, 524, 625, 937, 1005, 2096, 2314, 2345
NlaIV GGNNCC 2 cut(s) 775, 2090
NmuCI GTSAC 2 cut(s) 1464, 2165
NsiI ATGCAT 1 cut(s) 156
NspI RCATGY 2 cut(s) 937, 2314
NspV TTCGAA 2 cut(s) 306, 659
OliI CACNNNNGTG 1 cut(s) 1349
PaeI GCATGC 1 cut(s) 2314
PaeR7I CTCGAG 1 cut(s) 1970
PagI TCATGA 1 cut(s) 403
PciI ACATGT 1 cut(s) 933
PctI GAATGC 2 cut(s) 687, 1819
PdmI GAANNNNTTC 2 cut(s) 2115, 2235
PfeI GAWTC 6 cut(s) 459, 545, 628, 752, 1013, 1354
PflMI CCANNNNNTGG 2 cut(s) 1082, 2290
PfoI TCCNGGA 1 cut(s) 2151
PkrI GCNGC 2 cut(s) 1371, 1453
PleI GAGTC 2 cut(s) 382, 1471
PpsI GAGTC 2 cut(s) 382, 1471
PscI ACATGT 1 cut(s) 933
Psp6I CCWGG 2 cut(s) 367, 1126
PspEI GGTNACC 1 cut(s) 1317
PspGI CCWGG 2 cut(s) 367, 1126
PspN4I GGNNCC 2 cut(s) 775, 2090
PspPI GGNCC 2 cut(s) 773, 1213
PsrI GAACNNNNNNTAC 2 cut(s) 598, 630
PstI CTGCAG 1 cut(s) 1311
PstNI CAGNNNCTG 1 cut(s) 2320
PsuI RGATCY 4 cut(s) 242, 466, 1549, 2485
RsaI GTAC 5 cut(s) 556, 888, 927, 1506, 1891
RsaNI GTAC 5 cut(s) 555, 887, 926, 1505, 1890
RseI CAYNNNNRTG 4 cut(s) 1349, 1362, 1446, 2552
SaqAI TTAA 9 cut(s) 35, 447, 861, 1586, 1758, 1835, 1860, 2037, 2142
SatI GCNGC 2 cut(s) 1370, 1452
Sau96I GGNCC 2 cut(s) 773, 1213
ScaI AGTACT 2 cut(s) 556, 1891
SchI GAGTC 2 cut(s) 382, 1472
ScrFI CCNGG 5 cut(s) 369, 791, 1128, 1844, 2153
SfaNI GCATC 8 cut(s) 793, 811, 820, 829, 1938, 2120, 2307, 2663
SfcI CTRYAG 1 cut(s) 1307
Sfr274I CTCGAG 1 cut(s) 1970
SfuI TTCGAA 2 cut(s) 306, 659
SinI GGWCC 2 cut(s) 773, 1213
SlaI CTCGAG 1 cut(s) 1970
SmiMI CAYNNNNRTG 4 cut(s) 1349, 1362, 1446, 2552
SmlI CTYRAG 2 cut(s) 1970, 2257
SmoI CTYRAG 2 cut(s) 1970, 2257
SpeI ACTAGT 1 cut(s) 2392
SphI GCATGC 1 cut(s) 2314
SsiI CCGC 2 cut(s) 334, 833
StyD4I CCNGG 5 cut(s) 367, 789, 1126, 1842, 2151
TaiI ACGT 1 cut(s) 2009
TaqII GACCGA 1 cut(s) 761
TatI WGTACW 3 cut(s) 554, 925, 1889
TfiI GAWTC 6 cut(s) 459, 545, 628, 752, 1013, 1354
Tru1I TTAA 9 cut(s) 35, 447, 861, 1586, 1758, 1835, 1860, 2037, 2142
Tru9I TTAA 9 cut(s) 35, 447, 861, 1586, 1758, 1835, 1860, 2037, 2142
TscAI CASTG 3 cut(s) 369, 2430, 2482
TseFI GTSAC 2 cut(s) 1464, 2165
TseI GCWGC 2 cut(s) 1369, 1451
Tsp45I GTSAC 2 cut(s) 1464, 2165
TspDTI ATGAA 8 cut(s) 894, 1322, 1346, 1630, 1661, 1890, 1908, 2330
TspRI CASTG 3 cut(s) 369, 2430, 2482
Van91I CCANNNNNTGG 2 cut(s) 1082, 2290
VpaK11BI GGWCC 2 cut(s) 773, 1213
XagI CCTNNNNNAGG 1 cut(s) 1220
XapI RAATTY 6 cut(s) 121, 302, 1191, 1199, 1520, 2115
XbaI TCTAGA 2 cut(s) 104, 2359
XceI RCATGY 2 cut(s) 937, 2314
XhoI CTCGAG 1 cut(s) 1970
XmnI GAANNNNTTC 2 cut(s) 2115, 2235
ZraI GACGTC 1 cut(s) 2007
ZrmI AGTACT 2 cut(s) 556, 1891
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.