MD11G1029800.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000070
Physical Location & Seq
Forward (+)
2618565 .. 2620886
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1029800.v1.1.491

Sequence Viewer

Length: 2322 bp
ATGCCGGGAGAGGTTTTTCTTGTGGCATTCCTCCAAGTGCTGGTTGACAAGTTGGCGCAACGTGAGGTCTTGAAGTACTTTGGACTCGTAAAGGGCGTCGATCAAAACCTGAAGAAATGGAGTGCCACCTTGTCTGCAATTGGAGCGGTTCTGAATGACGCGGAGGAAAGGCAACTGATGGCTGAGAGCAACGCACTGAAGCTCTGGCTCGATGATCTCAAGGACTTGGCTTTTGATGCGGAAGACATGTTGGATAAATATCATACTAAAATGTTGAAACGTCAGATACAACATGCTCATTCCAGCACAAGAAGCAAAGCATGGAAATCAATTCCTAATCGTGTTTTCAACTTCAAAATGAACTCGGAAATACAGAAGATTTCCGAGCGATTACAAGAGATATCTGAAAGAAAAGACCAGCTTAGTTTGAAAATTGATACTAGGACATTGACTACAAAGGCACGCCAACACATATCGCCGAGTACTAGTCTACCAGATGGACCTGTGATTGGAAGGGATGAGGACAAAGGGAAGATTGTTGAGCTGCTGTCGAAACAAGAGCATCGGGCTGTCAATTTCGAGGTAGTTGCAATTGTCGGTATGGCTGGAGTCGGAAAGACAACACTTGCTGGACAAGTACTTAAAGATATGGTTGCAACCCAAATGTTTCAACCAGCCGTTTGGGTGTGCGTATCTGACGACTTCAACCTTGAAAGAGTGACAAAGCAAATTCTTGAATCAATCACATCTCGGCAATGTACCACAGAAGATTACAATAAGGTTCAAAATGATTTGCATAAGAAGTTAGCGGGGAAAAAGTTTTTAATTGTTTTAGACGATGTTTGGAAAACGTGTAGCTACGGTGAATGGAAGAAGCTGCAGTCCACTTTTCATGATGGAGCACAAGGAAGCAAGATAGTTGTGACAACACGTGATACAGATGTTTCAAAAATGATGGGAGCTGCCACGCTGGTTCACAATTTGGTGCCTATGGAAAATCATTTTTGTTTACAAGTATTTGAGCAGCATGCATTCTTAAATTCTAACGACAAGCCATCAAATTACGAGTTACTTAAGGAGAAAATTGTTGCAAAGTGTAGGGGATTGCCTTTGGCCGCGAGGACCCTTGGTGGTGTTCTACTTCGTAGAGAAATAGACGAATGGGAAGAACTATTGAACAACAAGTTGTGGAGTCTCTCAAATGAGCATGACATACTTCCTGTGTTGAGACTAAGTTACTTTTATCTTCCTTCACATTTGAAAAGATGCTTTGCCTATTGCTCAATAATTCCAAATGACTATGAATTCGGGGAGATGCAAATGATCCTTCTGTGGATGGCCGAGGGTTTGATTCATCCTCAACCAGAAGATAATAAGCAAATTGAAGATTTAGGTGCTGATTATTTTCGGGAGCTCGTATCTAGGTCATTGTTTCAAAAGTCAACCAAAAATACTTCAAAATATGTGATGCATGACCTCATTGGTGATTTAGCACGATGGGCAGCTGGAGATATTTGTTTTAGATTGGAGGATAAGCAAAATGATGATGGTGTACAACTTAGATGTTTTCCGAAGGCTCGCCATTCGTCTTACATTATCGGTCGTTATGATGGGGTTAAAAGATTTGAGGCATTTTCTGAAGTGAAATGTATGCGAACCTTCTTGCCACTCAGAAAGGGTTCTGCCTACAATTATTTAAGCCATCAGGTTACTTCTGATTTATTGCCAAAATTGCAGTACTTGCGGGTGCTTTCTTTTAATGGCTATAGAATAACTGAGCTGCCAAACTCAATTGGTGATTTGACATATCTACGGTATCTTGACCTTTCCTACACAGCTATAAGTAGTTTGCCTAAATCGATAAGTACTCTTTACAACTTGCAGACATTGATATTGGAATGCTGTTACGGTTTGAAGTCATTGCCTGCAGACATGAGTAATCTAATTAATTTGCGCCATCTCAACAACTCAGATGTATCTTCGTTGGAAGGAATGCCTCTAAAACTAGGTAGATTGGTGAATCTCCAATCTTTGCCTAATTTTATGGTCAATGCTGGAAGTGATCAATCAAGAATACGAGAGATGGGGCCCCTATCGCATCTCCGAGGGACATTGTGCATCTCAAGATTGGAGAATGTGACTGATGTTGAGGATGCTCAAGGGGCCAACTTAAAATACAAGGCGAGGCTTGATTCGTTGGTCCTAAAATGGTCTCATTCAAGTGACACAAGAGAAATGGAATCTGCTGTGCTTGACATGTTAGAGCCTCATAGAAAGATCAAGGAGCTCACCATCAAGAGTTATGCCGGCAAGGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

774

Amino Acids

88.14

Weight (kDa)

8.34

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 101 6.5e-20 Rx N-terminal domain
NB-ARC PF00931 174 - 347 2.7e-35 NB-ARC domain
WHD_DRP PF23559 429 - 498 3.1e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 574 - 767 3.3e-20 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 692 - 773 6e-21 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 985
AccB7I CCANNNNNTGG 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 490
AccII CGCG 2 cut(s) 161, 1118
AciI CCGC 6 cut(s) 146, 161, 239, 809, 1116, 1744
AclWI GGATC 1 cut(s) 1318
AcoI YGGCCR 2 cut(s) 1113, 1338
AcsI RAATTY 4 cut(s) 729, 1039, 1304, 2315
AcuI CTGAAG 3 cut(s) 131, 218, 1659
AcvI CACGTG 1 cut(s) 932
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 7 cut(s) 77, 484, 639, 760, 1554, 1739, 1867
AfiI CCNNNNNNNGG 2 cut(s) 40, 509
AflII CTTAAG 1 cut(s) 1073
AflIII ACRYGT 4 cut(s) 246, 851, 929, 2256
AhlI ACTAGT 1 cut(s) 485
Alw21I GWGCWC 3 cut(s) 904, 1416, 2289
Alw26I GTCTC 3 cut(s) 1199, 1222, 2217
AlwI GGATC 1 cut(s) 1318
AoxI GGCC 4 cut(s) 1113, 1338, 2087, 2163
ApaI GGGCCC 1 cut(s) 2091
ApeKI GCWGC 6 cut(s) 544, 877, 962, 1024, 1502, 1780
ApoI RAATTY 4 cut(s) 729, 1039, 1304, 2315
ArsI GACNNNNNNTTYG 4 cut(s) 215, 247, 1289, 1321
AseI ATTAAT 1 cut(s) 1947
Asp700I GAANNNNTTC 1 cut(s) 1678
AspLEI GCGC 2 cut(s) 58, 1956
AspS9I GGNCC 6 cut(s) 500, 1122, 2087, 2088, 2163, 2200
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 5 cut(s) 875, 1496, 1808, 2029, 2281
AvaII GGWCC 3 cut(s) 500, 1122, 2200
BaeGI GKGCMC 1 cut(s) 2091
BaeI ACNNNNGTAYC 2 cut(s) 927, 960
BanI GGYRCC 1 cut(s) 985
BanII GRGCYC 3 cut(s) 1416, 2091, 2289
BbrPI CACGTG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 3 cut(s) 904, 1416, 2289
BbvI GCAGC 6 cut(s) 531, 864, 949, 1036, 1514, 1767
BceAI ACGGC 1 cut(s) 662
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BclI TGATCA 1 cut(s) 2062
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 3 cut(s) 1199, 1222, 2217
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 4 cut(s) 441, 486, 1422, 2006
BfmI CTRYAG 3 cut(s) 878, 1765, 1926
BfrI CTTAAG 1 cut(s) 1073
BisI GCNGC 7 cut(s) 545, 878, 963, 1025, 1116, 1503, 1781
BlsI GCNGC 7 cut(s) 546, 879, 964, 1026, 1117, 1504, 1782
BmcAI AGTACT 5 cut(s) 77, 484, 639, 1739, 1867
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 3 cut(s) 500, 1122, 2200
BmgT120I GGNCC 6 cut(s) 500, 1122, 2087, 2088, 2163, 2200
BmiI GGNNCC 6 cut(s) 987, 1124, 2088, 2089, 2090, 2164
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 8 cut(s) 226, 571, 1256, 1305, 1458, 2107, 2127, 2143
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 627, 1527
BpuEI CTTGAG 3 cut(s) 203, 2107, 2142
BpuMI CCSGG 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 1859
BsaAI YACGTR 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 2217
BsaJI CCNNGG 3 cut(s) 1126, 1341, 2104
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 509
Bse118I RCCGGY 1 cut(s) 2306
Bse3DI GCAATG 2 cut(s) 761, 1919
Bse8I GATNNNNATC 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 1859
BseDI CCNNGG 3 cut(s) 1126, 1341, 2104
BseGI GGATG 4 cut(s) 523, 1341, 1354, 2158
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 40, 509
BseMI GCAATG 2 cut(s) 761, 1919
BseMII CTCAG 4 cut(s) 174, 1684, 1767, 1983
BseSI GKGCMC 1 cut(s) 2091
BseXI GCAGC 6 cut(s) 531, 864, 949, 1036, 1514, 1767
Bsh1236I CGCG 2 cut(s) 161, 1118
Bsh1285I CGRYCG 1 cut(s) 1603
BshFI GGCC 4 cut(s) 1115, 1340, 2089, 2165
BshNI GGYRCC 1 cut(s) 985
BshVI ATCGAT 1 cut(s) 1859
BsiEI CGRYCG 1 cut(s) 1603
BsiHKAI GWGCWC 3 cut(s) 904, 1416, 2289
BsiSI CCGG 2 cut(s) 5, 2307
BslFI GGGAC 1 cut(s) 2122
BslI CCNNNNNNNGG 2 cut(s) 40, 509
BsmAI GTCTC 3 cut(s) 1199, 1222, 2217
BsmFI GGGAC 1 cut(s) 2122
BsmI GAATGC 4 cut(s) 26, 1031, 1904, 1998
BsnI GGCC 4 cut(s) 1115, 1340, 2089, 2165
Bso31I GGTCTC 1 cut(s) 2217
Bsp120I GGGCCC 1 cut(s) 2087
Bsp1286I GDGCHC 4 cut(s) 904, 1416, 2091, 2289
Bsp1407I TGTACA 1 cut(s) 1552
Bsp143I GATC 5 cut(s) 100, 214, 1323, 2062, 2277
BspACI CCGC 6 cut(s) 146, 161, 239, 809, 1116, 1744
BspANI GGCC 4 cut(s) 1115, 1340, 2089, 2165
BspCNI CTCAG 4 cut(s) 175, 1683, 1768, 1982
BspDI ATCGAT 1 cut(s) 1859
BspFNI CGCG 2 cut(s) 161, 1118
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 6 cut(s) 987, 1124, 2088, 2089, 2090, 2164
BspMAI CTGCAG 2 cut(s) 882, 1930
BspPI GGATC 1 cut(s) 1318
BspT107I GGYRCC 1 cut(s) 985
BspTI CTTAAG 1 cut(s) 1073
BspTNI GGTCTC 1 cut(s) 2217
BsrBI CCGCTC 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 761, 1919
BsrFI RCCGGY 1 cut(s) 2306
BsrGI TGTACA 1 cut(s) 1552
BssAI RCCGGY 1 cut(s) 2306
BssECI CCNNGG 3 cut(s) 1126, 1341, 2104
BssMI GATC 5 cut(s) 100, 214, 1323, 2062, 2277
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 1126
Bst4CI ACNGT 3 cut(s) 863, 1815, 1910
BstACI GRCGYC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 1073
BstAPI GCANNNNNTGC 1 cut(s) 1741
BstAUI TGTACA 1 cut(s) 1552
BstBAI YACGTR 1 cut(s) 932
BstC8I GCNNGC 5 cut(s) 463, 1029, 1579, 1926, 2308
BstDEI CTNAG 7 cut(s) 183, 422, 1232, 1559, 1670, 1776, 1969
BstF5I GGATG 4 cut(s) 523, 1341, 1354, 2158
BstFNI CGCG 2 cut(s) 161, 1118
BstHHI GCGC 2 cut(s) 58, 1956
BstKTI GATC 5 cut(s) 103, 217, 1326, 2065, 2280
BstMAI GTCTC 3 cut(s) 1199, 1222, 2217
BstMBI GATC 5 cut(s) 100, 214, 1323, 2062, 2277
BstMCI CGRYCG 1 cut(s) 1603
BstMWI GCNNNNNNNGC 8 cut(s) 143, 236, 312, 1499, 1732, 1741, 2095, 2162
BstNSI RCATGY 4 cut(s) 250, 296, 1031, 2260
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 3 cut(s) 878, 1765, 1926
BstSLI GKGCMC 1 cut(s) 2091
BstUI CGCG 2 cut(s) 161, 1118
BstV1I GCAGC 6 cut(s) 531, 864, 949, 1036, 1514, 1767
BstV2I GAAGAC 1 cut(s) 249
BstXI CCANNNNNNTGG 1 cut(s) 681
Bsu15I ATCGAT 1 cut(s) 1859
BsuRI GGCC 4 cut(s) 1115, 1340, 2089, 2165
BsuTUI ATCGAT 1 cut(s) 1859
BtsCI GGATG 4 cut(s) 523, 1341, 1354, 2158
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 5 cut(s) 463, 1029, 1579, 1926, 2308
CciI TCATGA 1 cut(s) 892
CfoI GCGC 2 cut(s) 58, 1956
Cfr10I RCCGGY 1 cut(s) 2306
Cfr13I GGNCC 6 cut(s) 500, 1122, 2087, 2088, 2163, 2200
ClaI ATCGAT 1 cut(s) 1859
CseI GACGC 2 cut(s) 85, 167
Csp6I GTAC 7 cut(s) 76, 483, 638, 759, 1553, 1738, 1866
CviAII CATG 9 cut(s) 247, 293, 321, 893, 1028, 1208, 1472, 1933, 2257
CviQI GTAC 7 cut(s) 76, 483, 638, 759, 1553, 1738, 1866
DdeI CTNAG 7 cut(s) 183, 422, 1232, 1559, 1670, 1776, 1969
DpnI GATC 5 cut(s) 102, 216, 1325, 2064, 2279
DpnII GATC 5 cut(s) 100, 214, 1323, 2062, 2277
EaeI YGGCCR 2 cut(s) 1113, 1338
Ecl136II GAGCTC 2 cut(s) 1414, 2287
Eco130I CCWWGG 1 cut(s) 1126
Eco24I GRGCYC 3 cut(s) 1416, 2091, 2289
Eco31I GGTCTC 1 cut(s) 2217
Eco32I GATATC 1 cut(s) 402
Eco47I GGWCC 3 cut(s) 500, 1122, 2200
Eco53kI GAGCTC 2 cut(s) 1414, 2287
Eco57I CTGAAG 3 cut(s) 131, 218, 1659
Eco72I CACGTG 1 cut(s) 932
EcoICRI GAGCTC 2 cut(s) 1414, 2287
EcoO109I RGGNCCY 3 cut(s) 1122, 2087, 2088
EcoRI GAATTC 1 cut(s) 1304
EcoRV GATATC 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 1126
EcoT22I ATGCAT 2 cut(s) 1033, 1473
EcoT38I GRGCYC 3 cut(s) 1416, 2091, 2289
ErhI CCWWGG 1 cut(s) 1126
FaeI CATG 9 cut(s) 250, 296, 324, 896, 1031, 1211, 1475, 1936, 2260
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 1 cut(s) 2122
FatI CATG 9 cut(s) 246, 292, 320, 892, 1027, 1207, 1471, 1932, 2256
FauI CCCGC 2 cut(s) 802, 1737
FbaI TGATCA 1 cut(s) 2062
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 7 cut(s) 545, 878, 963, 1025, 1116, 1503, 1781
FokI GGATG 4 cut(s) 530, 1341, 1348, 2165
FriOI GRGCYC 3 cut(s) 1416, 2091, 2289
Fsp4HI GCNGC 7 cut(s) 545, 878, 963, 1025, 1116, 1503, 1781
FspBI CTAG 4 cut(s) 441, 486, 1422, 2006
GlaI GCGC 2 cut(s) 57, 1955
GluI GCNGC 7 cut(s) 545, 878, 963, 1025, 1116, 1503, 1781
GsuI CTGGAG 2 cut(s) 627, 1527
HaeIII GGCC 4 cut(s) 1115, 1340, 2089, 2165
HapII CCGG 2 cut(s) 5, 2307
HgaI GACGC 2 cut(s) 85, 167
HhaI GCGC 2 cut(s) 58, 1956
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 9 cut(s) 250, 296, 324, 896, 1031, 1211, 1475, 1936, 2260
Hin6I GCGC 2 cut(s) 56, 1954
HinP1I GCGC 2 cut(s) 56, 1954
HincII GTYRAC 2 cut(s) 46, 1443
HindII GTYRAC 2 cut(s) 46, 1443
HinfI GANTC 8 cut(s) 84, 609, 737, 1192, 1351, 2020, 2192, 2240
HpaII CCGG 2 cut(s) 5, 2307
HphI GGTGA 5 cut(s) 875, 1496, 1808, 2029, 2281
Hpy166II GTNNAC 7 cut(s) 46, 491, 885, 976, 1010, 1443, 1553
Hpy188III TCNNGA 8 cut(s) 70, 734, 893, 1409, 1820, 2070, 2124, 2296
Hpy8I GTNNAC 7 cut(s) 46, 491, 885, 976, 1010, 1443, 1553
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 507, 1260, 1337, 1567, 1669, 1982
HpyCH4III ACNGT 3 cut(s) 863, 1815, 1910
HpyCH4IV ACGT 4 cut(s) 61, 280, 851, 931
HpyF10VI GCNNNNNNNGC 8 cut(s) 143, 236, 312, 1499, 1732, 1741, 2095, 2162
HpyF3I CTNAG 7 cut(s) 183, 422, 1232, 1559, 1670, 1776, 1969
HpySE526I ACGT 4 cut(s) 61, 280, 851, 931
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 9 cut(s) 250, 296, 324, 896, 1031, 1211, 1475, 1936, 2260
HspAI GCGC 2 cut(s) 56, 1954
KroI GCCGGC 1 cut(s) 2306
KroNI GCCGGC 1 cut(s) 2308
Ksp22I TGATCA 1 cut(s) 2062
Kzo9I GATC 5 cut(s) 100, 214, 1323, 2062, 2277
LmnI GCTCC 5 cut(s) 143, 899, 959, 1411, 2284
Lsp1109I GCAGC 6 cut(s) 531, 864, 949, 1036, 1514, 1767
LweI GCATC 8 cut(s) 226, 571, 1256, 1305, 1458, 2107, 2127, 2143
MaeI CTAG 4 cut(s) 441, 486, 1422, 2006
MaeII ACGT 4 cut(s) 61, 280, 851, 931
MaeIII GTNAC 8 cut(s) 718, 922, 1068, 1235, 1708, 1904, 2137, 2222
MalI GATC 5 cut(s) 102, 216, 1325, 2064, 2279
MbiI CCGCTC 1 cut(s) 146
MboI GATC 5 cut(s) 100, 214, 1323, 2062, 2277
MfeI CAATTG 3 cut(s) 138, 591, 1791
MhlI GDGCHC 4 cut(s) 904, 1416, 2091, 2289
MlyI GAGTC 3 cut(s) 78, 618, 1201
MmeI TCCRAC 3 cut(s) 231, 592, 1965
Mph1103I ATGCAT 2 cut(s) 1033, 1473
MroNI GCCGGC 1 cut(s) 2306
MroXI GAANNNNTTC 1 cut(s) 1678
MseI TTAA 9 cut(s) 642, 824, 1037, 1074, 1617, 1697, 1758, 1947, 2171
MslI CAYNNNNRTG 1 cut(s) 2220
MspA1I CMGCKG 1 cut(s) 1505
MspCI CTTAAG 1 cut(s) 1073
MspI CCGG 2 cut(s) 5, 2307
MspR9I CCNGG 1 cut(s) 6
MunI CAATTG 3 cut(s) 138, 591, 1791
Mva1269I GAATGC 4 cut(s) 26, 1031, 1904, 1998
MvnI CGCG 2 cut(s) 161, 1118
MwoI GCNNNNNNNGC 8 cut(s) 143, 236, 312, 1499, 1732, 1741, 2095, 2162
NaeI GCCGGC 1 cut(s) 2308
NciI CCSGG 1 cut(s) 6
NdeII GATC 5 cut(s) 100, 214, 1323, 2062, 2277
NgoMIV GCCGGC 1 cut(s) 2306
NlaIII CATG 9 cut(s) 250, 296, 324, 896, 1031, 1211, 1475, 1936, 2260
NlaIV GGNNCC 6 cut(s) 987, 1124, 2088, 2089, 2090, 2164
NmeAIII GCCGAG 3 cut(s) 504, 730, 1366
NmuCI GTSAC 4 cut(s) 718, 922, 2137, 2222
NsiI ATGCAT 2 cut(s) 1033, 1473
NspI RCATGY 4 cut(s) 250, 296, 1031, 2260
PaeI GCATGC 1 cut(s) 1031
PagI TCATGA 1 cut(s) 892
PciI ACATGT 2 cut(s) 246, 2256
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 4 cut(s) 26, 1031, 1904, 1998
PdiI GCCGGC 1 cut(s) 2308
PdmI GAANNNNTTC 1 cut(s) 1678
PfeI GAWTC 5 cut(s) 737, 1351, 2020, 2192, 2240
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 7 cut(s) 546, 879, 964, 1026, 1117, 1504, 1782
PleI GAGTC 3 cut(s) 78, 617, 1200
PmaCI CACGTG 1 cut(s) 932
PmlI CACGTG 1 cut(s) 932
PpsI GAGTC 3 cut(s) 78, 617, 1200
Ppu21I YACGTR 1 cut(s) 932
PpuMI RGGWCCY 1 cut(s) 1122
PscI ACATGT 2 cut(s) 246, 2256
PshBI ATTAAT 1 cut(s) 1947
Psp124BI GAGCTC 2 cut(s) 1416, 2289
Psp5II RGGWCCY 1 cut(s) 1122
PspCI CACGTG 1 cut(s) 932
PspN4I GGNNCC 6 cut(s) 987, 1124, 2088, 2089, 2090, 2164
PspOMI GGGCCC 1 cut(s) 2087
PspPI GGNCC 6 cut(s) 500, 1122, 2087, 2088, 2163, 2200
PspPPI RGGWCCY 1 cut(s) 1122
PstI CTGCAG 2 cut(s) 882, 1930
PvuII CAGCTG 1 cut(s) 1505
RsaI GTAC 7 cut(s) 77, 484, 639, 760, 1554, 1739, 1867
RsaNI GTAC 7 cut(s) 76, 483, 638, 759, 1553, 1738, 1866
RseI CAYNNNNRTG 1 cut(s) 2220
SacI GAGCTC 2 cut(s) 1416, 2289
SaqAI TTAA 9 cut(s) 642, 824, 1037, 1074, 1617, 1697, 1758, 1947, 2171
SatI GCNGC 7 cut(s) 545, 878, 963, 1025, 1116, 1503, 1781
Sau3AI GATC 5 cut(s) 100, 214, 1323, 2062, 2277
Sau96I GGNCC 6 cut(s) 500, 1122, 2087, 2088, 2163, 2200
ScaI AGTACT 5 cut(s) 77, 484, 639, 1739, 1867
SchI GAGTC 3 cut(s) 78, 618, 1201
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 4 cut(s) 904, 1416, 2091, 2289
SfaNI GCATC 8 cut(s) 226, 571, 1256, 1305, 1458, 2107, 2127, 2143
SfcI CTRYAG 3 cut(s) 878, 1765, 1926
SinI GGWCC 3 cut(s) 500, 1122, 2200
SmiMI CAYNNNNRTG 1 cut(s) 2220
SmlI CTYRAG 4 cut(s) 218, 1073, 2122, 2157
SmoI CTYRAG 4 cut(s) 218, 1073, 2122, 2157
SpeI ACTAGT 1 cut(s) 485
SphI GCATGC 1 cut(s) 1031
SsiI CCGC 6 cut(s) 146, 161, 239, 809, 1116, 1744
SspMI CTAG 4 cut(s) 441, 486, 1422, 2006
SstI GAGCTC 2 cut(s) 1416, 2289
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 1126
TaaI ACNGT 3 cut(s) 863, 1815, 1910
TaiI ACGT 4 cut(s) 64, 283, 854, 934
TaqI TCGA 5 cut(s) 99, 210, 551, 579, 1859
TaqII GACCGA 1 cut(s) 1589
TatI WGTACW 6 cut(s) 75, 482, 637, 1552, 1737, 1865
TauI GCSGC 1 cut(s) 1118
TfiI GAWTC 5 cut(s) 737, 1351, 2020, 2192, 2240
Tru1I TTAA 9 cut(s) 642, 824, 1037, 1074, 1617, 1697, 1758, 1947, 2171
Tru9I TTAA 9 cut(s) 642, 824, 1037, 1074, 1617, 1697, 1758, 1947, 2171
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 4 cut(s) 718, 922, 2137, 2222
TseI GCWGC 6 cut(s) 544, 877, 962, 1024, 1502, 1780
Tsp45I GTSAC 4 cut(s) 718, 922, 2137, 2222
TspDTI ATGAA 4 cut(s) 374, 881, 1317, 1343
TspRI CASTG 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 40
Vha464I CTTAAG 1 cut(s) 1073
VpaK11BI GGWCC 3 cut(s) 500, 1122, 2200
VspI ATTAAT 1 cut(s) 1947
XapI RAATTY 4 cut(s) 729, 1039, 1304, 2315
XceI RCATGY 4 cut(s) 250, 296, 1031, 2260
XmiI GTMKAC 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 1678
XspI CTAG 4 cut(s) 441, 486, 1422, 2006
ZrmI AGTACT 5 cut(s) 77, 484, 639, 1739, 1867
Zsp2I ATGCAT 2 cut(s) 1033, 1473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.