Rmu_sc0013413.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013413.1
OG0000070
Physical Location & Seq
Reverse (-)
512 .. 8647
8136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013413.1_g000001.1.cds

Sequence Viewer

Length: 4761 bp
atgttagaaggcaacaacacagggtttgagggaagctctcttaagtgttcattgggtgacgttaataatgatgatgcctgctttaaaaaagccctagaagtttcaaacgataagtcagctcaggctaagtctcttgcacgcagtgcatacaacaggggggaatatagaacatcaaaacttctgtggcagtctgcaatggccttgaattctctgtatcctgatggctggtttgccctaggggctgctgcattaaaggatggggatattgagaaggcactagatggcttcactccggctgttcagcttgatcctgaaaatggggaggcatggaataatattgcttgtttgtcgatgggttttgtgtcgggtgtcattttccattccattgaattgtgcatatattggccaaaaagaacagagtggaaaggtcgcaagggacatgctgaagctgaagcttcaccgaagaaacttggacgttgccttgcgctgtcgaacatatgtggcgcacatgcttcttatcctcagctaatcacttttgactttgtccttcaacctcataattctgcaaagatttctcagtatatatccttctttgcttcattggctttgctgctttcttctctattctctttcctctttacaactaaagttgtacttcctttcaacaaaagcatggcagtgggagagatctttcttgcggcattccttcggttgctgctggacaggttaacgcgtctagagttctttggaaggttaggaggaggagttggcaaaaagctgcagaaatggagcgaaacactgtctgcaattgaagcggtgctttccgatgcggaggagaagcagctgacgaacacggcagtggatctgtggctgaatgacctcaaacacttggcttatgatatcgacgatctactcaacaccttttctaatgagatgttagcacgcgagcagctcaagcttcaccaaactggcacgagcaaggtacgacgcttcttgaccaaaggtcctcacaaagttatgttcaatttcagtgtgaactccgaaatagacgacattgctaatcgtttgcaagacatatttgaccggaaagagaaactcggtttgaaatatattgagcaaacctctacgtcaacatcgtcatcaaaaaggacaccaagttcgcctgtgttgggtggatctgtggttgggagagatgaagacgcaggaaagattgtggaattgttgtccagaaatgctgatccttcttctcccacaaattatcaagttgttgccattgttggtatgggtggactcggcaagacaacgcttgcgggacaagtcttcaatgatgtagttgcaatgaaacagtttgatgatctcaagatctgggtttcagtatccgataacttcgatcttcaaacggtgacgagagctatttttaaggaagttacatctcggccttgtgatatggatgagttcagtcgacttcaagataatctgagcaaggagatcgatggtaaaaggtttttgattgttttagatgatgtctggagaacatgtgattatgattcgtggacaaaactgcaagcgcccttccgtgggggagctaagggaagtaagataatggtgacaacacgtgacgaaaaagttgcaatattgatgggagccccagccggtgatgtttatcatttaaagactctatcagaagaagattgtttgcaagtatttgagcagcatgttagcaatgacaggccaccgaattatgacttgcttaagaagaaaattgtaacaaactgcaatggattgccattcgctgcaaaaactcttggtggctttttacgttgtaaccaaactgacaagtgggaggaaatactgaatgataaattatggagtatatcagatgggagtaatatactcccagtactcagattgagttatcattatctcccttcacctttgaagaggtgctttgcctattgctcaatacttcccaatgactatgaatttgggaaaacccaattaatccttctgtggatggcagagggtttccttgagcaaacagaagggactaaaggaatggaagatatcggtgacgaatattttggggagctactatctcggtcattatttcaaaaggcgggcaaaaacagttcatgctacgtaatgcacgatcttgttggtgatttggcacgatgggctgctggagaaacattttgcagattggaggataaactgcatggtagatgttctacaaatactcgtcatctaacttacgtttctggtaagtttgatggggtaaaaagatttgagatactttctcgagcaaaacgcttgcggactttcctaccacttcttgtttccggtggttatgagaattatctaactcgttatgctacttctgatttattgtcacaattgaagtacttgcgggtgctctccttcaatggctataaactgaccgaggtgccaaattccgtaggtaagttgagacatctacggtaccttgatctttctcacacattaataacgagtttgcctgagtcaacatgcatgctttacaacttacagacgttaatattagagaattgttcaaaattgaaaaccctaccttcaaacatgagcaatttatctaatttacgtcatctcaacaattcaaacatgccttcattcgaagaaatgcctccccaagtaagtcggttgactcgtctgcgaactttgcgtaattttgtggtggggaaatgtagtgcatcaaggattggagagatagggtcattgcatcttcgtgggaccttgagcgttggaagattggaaaatgtgattgatgttggggatgcgaagacggctcaaataatgaacaaggaagggctgaataccttgcaattggaatggagtggcacaagtgagaaggagtcggaggtgctgtgcagtttagaacctcaaaaaaagcttctacatctcactatcaaaggttacaatggtttcgaattttcaaaatggattggacatccttcattctctgatatgacatttgtgaagttggagaattgtaaaaattgtcaattcttacctcctctcggccaattaccatctctgaaaaacctttggatagaaggactggccagtgttgaaagtgtgggtgttgagttttacggagagtgtagcttgccttttccagtgttggaagccctgattttcaaggatatgcaaaattggaaggagtggcttccttgtaaaagagatgaagaaattcaagttttgccatgcatggaaaagcttttggtccttagttgccccaaattggaaggttggttacccaagatcatggattcattatcagatctgcgtatacgtgaatgtgaagagttagtggtttcaatagccaattataaacatcttcgtaagctgttcatcgacggttgtaaaagggtggtgcacagaagtggagttaagtttgagtcactggaggatatggggctttataatatttcagagttcagactcgaaatggacgggttcatcagaggattgccaaagcttcaaaatttgtggattactggttgtgaagagttgacatgtttatgggagaatgaggatagatggctgcaacgtgggatttctaatattattggaggcaacatgtctgactccccctctcactttattcaagagctaagagcactcaagcaacttgtgttaactggatgctcaaatctaatttctttacctgaagctagttggccaccttgtcttgaatatgtaaagatggagtcttgtaattctttgacatatttcgtaaggtatcaagtaccgtcaagcataagaagaatagagatagcaaaatgtccaaatttgaaactattagtgaaactactagagggttgtctggagcacttgaagataacagagtgtgcatctttgacatccttattaggcaaaggaggccgactacccagaacgctcaaatatctttatttacgtgactgtcaacaattggagtcaataagcaaaacattccacgatgacacttgtcttggagatattaggataaagaggtgtgcaaatctcaaatccttaccagaggggctatgccatctctccgctcttcgcattttacatatagatgaatgtggaagtctcgtttccttcccaagaggagggttgccatccaacctgatagactttcgtatcgacaattgtgatcaattggaagccctccccagaggcatggacaacctcagctctcttcagactttattgttggaatactgtggaggtaatttggcatccattctagaagagggttttccacccaacctaattaatcttcatatttggactcccaaaagctgcaagcctctctcagagtgggggcttcaccacttggacagactcacctctcttaaaggcttgtggatcggtggtgtagatccagatctggtgtcctttccgccaaaggaggtgctgctccctaaatctctcattcaactcgagattggagagttcccaaatctgaagcgcctgtcatcatcttttcaatcactcacctctcttgaatcccttaacattggttactgcccaaagctagcatctattattccagaaaaagaggatcatctgcctctttcacttacacagcttcgcatccgtgagggctgtccgctgctcacaaaaaaatacaaaccaggtaaaggacgacactggcccaaagaaatagcccacatcccttacgtttatgttggagacttcaaggacgaagccgacgccgaccgccgctgggcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1586

Amino Acids

178.47

Weight (kDa)

7.27

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3366, 3459
Acc65I GGTACC 1 cut(s) 2478
AccB1I GGYRCC 2 cut(s) 2443, 2478
AccBSI CCGCTC 1 cut(s) 4079
AccI GTMKAC 2 cut(s) 1462, 3325
AccII CGCG 2 cut(s) 733, 945
AclWI GGATC 7 cut(s) 302, 870, 1183, 1232, 4400, 4400, 4596
AcoI YGGCCR 4 cut(s) 404, 3055, 3096, 3716
AcsI RAATTY 7 cut(s) 205, 1982, 2449, 2963, 3225, 3520, 3826
AcuI CTGAAG 5 cut(s) 465, 471, 3726, 4208, 4511
AcvI CACGTG 1 cut(s) 1616
AcyI GRCGYC 1 cut(s) 4740
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 6 cut(s) 654, 984, 1902, 2402, 2480, 3786
AfiI CCNNNNNNNGG 9 cut(s) 317, 1169, 1577, 1578, 3053, 3277, 4133, 4667, 4753
AflII CTTAAG 2 cut(s) 41, 1751
AflIII ACRYGT 5 cut(s) 731, 1535, 1613, 3551, 3615
AhdI GACNNNNNGTC 1 cut(s) 1002
AjnI CCWGG 1 cut(s) 4660
AjuI GAANNNNNNNTTGG 2 cut(s) 1989, 2021
AleI CACNNNNGTG 2 cut(s) 857, 3417
AloI GAACNNNNNNTCC 2 cut(s) 1141, 1173
Alw21I GWGCWC 4 cut(s) 2415, 3414, 3658, 3870
Alw26I GTCTC 4 cut(s) 135, 2461, 4118, 4713
Alw44I GTGCAC 1 cut(s) 3410
AlwI GGATC 7 cut(s) 302, 870, 1183, 1232, 4400, 4400, 4596
Ama87I CYCGRG 2 cut(s) 2298, 4466
AoxI GGCC 9 cut(s) 198, 404, 1436, 1730, 3055, 3096, 3716, 3919, 4679
ApaLI GTGCAC 1 cut(s) 3410
ApoI RAATTY 7 cut(s) 205, 1982, 2449, 2963, 3225, 3520, 3826
ArsI GACNNNNNNTTYG 8 cut(s) 98, 130, 1141, 1173, 1967, 1999, 2063, 2095
AseI ATTAAT 3 cut(s) 2000, 2501, 4299
Asp700I GAANNNNTTC 1 cut(s) 3225
Asp718I GGTACC 1 cut(s) 2478
AspA2I CCTAGG 1 cut(s) 235
AspLEI GCGC 4 cut(s) 487, 506, 1570, 4497
AspS9I GGNCC 4 cut(s) 1004, 2766, 3259, 4680
AsuII TTCGAA 2 cut(s) 2649, 2961
AsuNHI GCTAGC 1 cut(s) 4561
AvaI CYCGRG 2 cut(s) 2298, 4466
AvaII GGWCC 3 cut(s) 1004, 2766, 3259
AvrII CCTAGG 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 3414
BaeI ACNNNNGTAYC 2 cut(s) 4147, 4180
BalI TGGCCA 3 cut(s) 406, 3098, 3718
BanI GGYRCC 2 cut(s) 2443, 2478
BanII GRGCYC 1 cut(s) 1648
BarI GAAGNNNNNNTAC 4 cut(s) 572, 604, 3273, 3305
BauI CACGAG 1 cut(s) 973
BbrPI CACGTG 1 cut(s) 1616
BbsI GAAGAC 3 cut(s) 1203, 1312, 2822
Bbv12I GWGCWC 4 cut(s) 2415, 3414, 3658, 3870
BbvCI CCTCAGC 2 cut(s) 522, 4214
BceAI ACGGC 2 cut(s) 870, 2835
BcgI CGANNNNNNTGC 4 cut(s) 1471, 1505, 1610, 1644
BciT130I CCWGG 1 cut(s) 4662
BciVI GTATCC 2 cut(s) 225, 1387
BclI TGATCA 1 cut(s) 4177
BcoDI GTCTC 4 cut(s) 135, 2461, 4118, 4713
BfaI CTAG 8 cut(s) 95, 236, 278, 737, 3711, 3851, 4271, 4562
BfmI CTRYAG 1 cut(s) 779
BfoI RGCGCY 2 cut(s) 1571, 4498
BfrI CTTAAG 2 cut(s) 41, 1751
BfuI GTATCC 2 cut(s) 225, 1387
BglI GCCNNNNNGGC 1 cut(s) 239
BglII AGATCT 4 cut(s) 687, 1362, 3316, 4411
BlnI CCTAGG 1 cut(s) 235
BmcAI AGTACT 2 cut(s) 1902, 2402
Bme1390I CCNGG 1 cut(s) 4662
Bme18I GGWCC 3 cut(s) 1004, 2766, 3259
BmeRI GACNNNNNGTC 1 cut(s) 1002
BmeT110I CYCGRG 2 cut(s) 2298, 4466
BmgT120I GGNCC 4 cut(s) 1004, 2766, 3259, 4680
BmiI GGNNCC 4 cut(s) 1645, 2445, 2480, 2767
BmrFI CCNGG 1 cut(s) 4662
BmrI ACTGGG 1 cut(s) 1892
BmtI GCTAGC 1 cut(s) 4565
BmuI ACTGGG 1 cut(s) 1892
BoxI GACNNNNGTC 1 cut(s) 4005
BpiI GAAGAC 3 cut(s) 1203, 1312, 2822
BplI GAGNNNNNCTC 4 cut(s) 20, 52, 1106, 1138
BpmI CTGGAG 4 cut(s) 1549, 2202, 3461, 3884
Bpu10I CCTNAGC 4 cut(s) 120, 522, 1587, 4214
Bpu14I TTCGAA 2 cut(s) 2649, 2961
BpuEI CTTGAG 5 cut(s) 938, 1343, 2051, 2791, 3644
Bsa29I ATCGAT 1 cut(s) 1491
BsaAI YACGTR 4 cut(s) 1616, 2140, 3329, 3956
BsaBI GATNNNNATC 2 cut(s) 1662, 4410
BsaHI GRCGYC 1 cut(s) 4740
BsaJI CCNNGG 3 cut(s) 235, 1576, 2439
BsaWI WCCGGW 2 cut(s) 1083, 2339
BsaXI ACNNNNNCTCC 6 cut(s) 750, 780, 1522, 1552, 2885, 2915
Bsc4I CCNNNNNNNGG 9 cut(s) 317, 1169, 1577, 1578, 3053, 3277, 4133, 4667, 4753
Bse118I RCCGGY 1 cut(s) 1652
Bse1I ACTGG 9 cut(s) 973, 1898, 3099, 3099, 3152, 3444, 3538, 3682, 4682
Bse3DI GCAATG 6 cut(s) 201, 1053, 1344, 1729, 1783, 2750
Bse8I GATNNNNATC 2 cut(s) 1662, 4410
BseBI CCWGG 1 cut(s) 4662
BseCI ATCGAT 1 cut(s) 1491
BseDI CCNNGG 3 cut(s) 235, 1576, 2439
BseJI GATNNNNATC 2 cut(s) 1662, 4410
BseLI CCNNNNNNNGG 9 cut(s) 317, 1169, 1577, 1578, 3053, 3277, 4133, 4667, 4753
BseMI GCAATG 6 cut(s) 201, 1053, 1344, 1729, 1783, 2750
BseMII CTCAG 8 cut(s) 134, 536, 590, 1469, 1918, 2508, 4228, 4353
BseNI ACTGG 9 cut(s) 973, 1898, 3099, 3099, 3152, 3444, 3538, 3682, 4682
BseRI GAGGAG 5 cut(s) 774, 777, 848, 3039, 4146
BseSI GKGCMC 1 cut(s) 3414
BseYI CCCAGC 2 cut(s) 1648, 4752
BsgI GTGCAG 1 cut(s) 2923
Bsh1236I CGCG 2 cut(s) 733, 945
Bsh1285I CGRYCG 1 cut(s) 4747
BshFI GGCC 9 cut(s) 200, 406, 1438, 1732, 3057, 3098, 3718, 3921, 4681
BshNI GGYRCC 2 cut(s) 2443, 2478
BshVI ATCGAT 1 cut(s) 1491
BsiEI CGRYCG 1 cut(s) 4747
BsiHKAI GWGCWC 4 cut(s) 2415, 3414, 3658, 3870
BsiHKCI CYCGRG 2 cut(s) 2298, 4466
BsiSI CCGG 4 cut(s) 293, 1084, 1653, 2340
BslFI GGGAC 4 cut(s) 450, 1326, 2059, 2779
BslI CCNNNNNNNGG 9 cut(s) 317, 1169, 1577, 1578, 3053, 3277, 4133, 4667, 4753
BsmAI GTCTC 4 cut(s) 135, 2461, 4118, 4713
BsmFI GGGAC 4 cut(s) 450, 1326, 2059, 2779
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 9 cut(s) 200, 406, 1438, 1732, 3057, 3098, 3718, 3921, 4681
BsoBI CYCGRG 2 cut(s) 2298, 4466
Bsp119I TTCGAA 2 cut(s) 2649, 2961
Bsp1286I GDGCHC 5 cut(s) 1648, 2415, 3414, 3658, 3870
BspANI GGCC 9 cut(s) 200, 406, 1438, 1732, 3057, 3098, 3718, 3921, 4681
BspCNI CTCAG 8 cut(s) 133, 535, 589, 1470, 1917, 2509, 4227, 4352
BspDI ATCGAT 1 cut(s) 1491
BspFNI CGCG 2 cut(s) 733, 945
BspLI GGNNCC 4 cut(s) 1645, 2445, 2480, 2767
BspMAI CTGCAG 1 cut(s) 783
BspOI GCTAGC 1 cut(s) 4565
BspPI GGATC 7 cut(s) 302, 870, 1183, 1232, 4400, 4400, 4596
BspQI GCTCTTC 1 cut(s) 4086
BspT104I TTCGAA 2 cut(s) 2649, 2961
BspT107I GGYRCC 2 cut(s) 2443, 2478
BspTI CTTAAG 2 cut(s) 41, 1751
BsrBI CCGCTC 1 cut(s) 4079
BsrDI GCAATG 6 cut(s) 201, 1053, 1344, 1729, 1783, 2750
BsrFI RCCGGY 1 cut(s) 1652
BsrI ACTGG 9 cut(s) 973, 1898, 3099, 3099, 3152, 3444, 3538, 3682, 4682
BssAI RCCGGY 1 cut(s) 1652
BssECI CCNNGG 3 cut(s) 235, 1576, 2439
BssNAI GTATAC 1 cut(s) 3326
BssNI GRCGYC 1 cut(s) 4740
BssSI CACGAG 1 cut(s) 973
BssT1I CCWWGG 1 cut(s) 235
Bst1107I GTATAC 1 cut(s) 3326
Bst2BI CACGAG 1 cut(s) 973
Bst2UI CCWGG 1 cut(s) 4662
Bst4CI ACNGT 9 cut(s) 801, 1347, 1402, 2129, 2478, 3395, 3789, 3962, 4247
Bst6I CTCTTC 6 cut(s) 1934, 3333, 3537, 4086, 4227, 4269
BstACI GRCGYC 1 cut(s) 4740
BstAFI CTTAAG 2 cut(s) 41, 1751
BstAPI GCANNNNNTGC 1 cut(s) 143
BstBAI YACGTR 4 cut(s) 1616, 2140, 3329, 3956
BstBI TTCGAA 2 cut(s) 2649, 2961
BstDSI CCRYGG 1 cut(s) 1576
BstEII GGTNACC 1 cut(s) 3288
BstFNI CGCG 2 cut(s) 733, 945
BstH2I RGCGCY 2 cut(s) 1571, 4498
BstHHI GCGC 4 cut(s) 487, 506, 1570, 4497
BstMAI GTCTC 4 cut(s) 135, 2461, 4118, 4713
BstMCI CGRYCG 1 cut(s) 4747
BstMWI GCNNNNNNNGC 9 cut(s) 143, 239, 602, 812, 955, 2174, 2695, 2819, 3918
BstNI CCWGG 1 cut(s) 4662
BstNSI RCATGY 9 cut(s) 443, 512, 1539, 1718, 2529, 2533, 2641, 3555, 3619
BstPAI GACNNNNGTC 1 cut(s) 4005
BstPI GGTNACC 1 cut(s) 3288
BstSCI CCNGG 1 cut(s) 4660
BstSFI CTRYAG 1 cut(s) 779
BstSLI GKGCMC 1 cut(s) 3414
BstSNI TACGTA 1 cut(s) 2140
BstUI CGCG 2 cut(s) 733, 945
BstV2I GAAGAC 3 cut(s) 1203, 1312, 2822
BstX2I RGATCY 7 cut(s) 687, 862, 1175, 1362, 3316, 4405, 4411
BstXI CCANNNNNNTGG 2 cut(s) 3301, 4204
BstYI RGATCY 7 cut(s) 687, 862, 1175, 1362, 3316, 4405, 4411
BstZ17I GTATAC 1 cut(s) 3326
Bsu15I ATCGAT 1 cut(s) 1491
BsuI GTATCC 2 cut(s) 225, 1387
BsuRI GGCC 9 cut(s) 200, 406, 1438, 1732, 3057, 3098, 3718, 3921, 4681
BsuTUI ATCGAT 1 cut(s) 1491
BtgI CCRYGG 1 cut(s) 1576
BtsI GCAGTG 3 cut(s) 148, 684, 864
BtsIMutI CAGTG 9 cut(s) 148, 684, 797, 864, 1036, 3106, 3159, 3437, 4675
CfoI GCGC 4 cut(s) 487, 506, 1570, 4497
Cfr10I RCCGGY 1 cut(s) 1652
Cfr13I GGNCC 4 cut(s) 1004, 2766, 3259, 4680
ClaI ATCGAT 1 cut(s) 1491
CseI GACGC 4 cut(s) 722, 996, 1208, 4748
CsiI ACCWGGT 1 cut(s) 4660
Csp6I GTAC 6 cut(s) 653, 983, 1901, 2401, 2479, 3785
CspCI CAANNNNNGTGG 2 cut(s) 3506, 3541
CviQI GTAC 6 cut(s) 653, 983, 1901, 2401, 2479, 3785
DraI TTTAAA 2 cut(s) 85, 1671
DraIII CACNNNGTG 1 cut(s) 143
DriI GACNNNNNGTC 1 cut(s) 1002
EaeI YGGCCR 4 cut(s) 404, 3055, 3096, 3716
Eam1104I CTCTTC 6 cut(s) 1934, 3333, 3537, 4086, 4227, 4269
Eam1105I GACNNNNNGTC 1 cut(s) 1002
EarI CTCTTC 6 cut(s) 1934, 3333, 3537, 4086, 4227, 4269
EciI GGCGGA 1 cut(s) 4416
Eco105I TACGTA 1 cut(s) 2140
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 1648
Eco32I GATATC 2 cut(s) 901, 2065
Eco47I GGWCC 3 cut(s) 1004, 2766, 3259
Eco57I CTGAAG 5 cut(s) 465, 471, 3726, 4208, 4511
Eco72I CACGTG 1 cut(s) 1616
Eco88I CYCGRG 2 cut(s) 2298, 4466
Eco91I GGTNACC 1 cut(s) 3288
EcoO109I RGGNCCY 2 cut(s) 1004, 2766
EcoO65I GGTNACC 1 cut(s) 3288
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 4660
EcoRV GATATC 2 cut(s) 901, 2065
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 2 cut(s) 2531, 3245
EcoT38I GRGCYC 1 cut(s) 1648
ErhI CCWWGG 1 cut(s) 235
FalI AAGNNNNNCTT 6 cut(s) 639, 671, 804, 836, 1931, 1963
FaqI GGGAC 4 cut(s) 450, 1326, 2059, 2779
FauI CCCGC 3 cut(s) 1303, 2110, 2400
FauNDI CATATG 1 cut(s) 497
FbaI TGATCA 1 cut(s) 4177
FblI GTMKAC 2 cut(s) 1462, 3325
FriOI GRGCYC 1 cut(s) 1648
FspBI CTAG 8 cut(s) 95, 236, 278, 737, 3711, 3851, 4271, 4562
GlaI GCGC 4 cut(s) 486, 505, 1569, 4496
GsaI CCCAGC 2 cut(s) 1652, 4756
GsuI CTGGAG 4 cut(s) 1549, 2202, 3461, 3884
HaeII RGCGCY 2 cut(s) 1571, 4498
HaeIII GGCC 9 cut(s) 200, 406, 1438, 1732, 3057, 3098, 3718, 3921, 4681
HapII CCGG 4 cut(s) 293, 1084, 1653, 2340
HgaI GACGC 4 cut(s) 722, 996, 1208, 4748
HhaI GCGC 4 cut(s) 487, 506, 1570, 4497
Hin1I GRCGYC 1 cut(s) 4740
Hin6I GCGC 4 cut(s) 485, 504, 1568, 4495
HinP1I GCGC 4 cut(s) 485, 504, 1568, 4495
HincII GTYRAC 8 cut(s) 729, 1131, 1463, 2523, 2679, 3549, 3675, 3965
HindII GTYRAC 8 cut(s) 729, 1131, 1463, 2523, 2679, 3549, 3675, 3965
HindIII AAGCTT 5 cut(s) 453, 956, 2924, 3251, 3512
HpaI GTTAAC 2 cut(s) 729, 3675
HpaII CCGG 4 cut(s) 293, 1084, 1653, 2340
Hpy99I CGWCG 4 cut(s) 908, 990, 3395, 4742
HpyCH4III ACNGT 9 cut(s) 801, 1347, 1402, 2129, 2478, 3395, 3789, 3962, 4247
HpyF10VI GCNNNNNNNGC 9 cut(s) 143, 239, 602, 812, 955, 2174, 2695, 2819, 3918
Hsp92I GRCGYC 1 cut(s) 4740
HspAI GCGC 4 cut(s) 485, 504, 1568, 4495
KpnI GGTACC 1 cut(s) 2482
Ksp22I TGATCA 1 cut(s) 4177
KspAI GTTAAC 2 cut(s) 729, 3675
LguI GCTCTTC 1 cut(s) 4086
LmnI GCTCC 6 cut(s) 789, 1583, 1643, 2086, 3865, 4449
MabI ACCWGGT 1 cut(s) 4660
MaeI CTAG 8 cut(s) 95, 236, 278, 737, 3711, 3851, 4271, 4562
MbiI CCGCTC 1 cut(s) 4079
MfeI CAATTG 6 cut(s) 807, 2393, 2858, 3968, 4171, 4181
MflI RGATCY 7 cut(s) 687, 862, 1175, 1362, 3316, 4405, 4411
MhlI GDGCHC 5 cut(s) 1648, 2415, 3414, 3658, 3870
MlsI TGGCCA 3 cut(s) 406, 3098, 3718
MluI ACGCGT 1 cut(s) 731
MluNI TGGCCA 3 cut(s) 406, 3098, 3718
MmeI TCCRAC 7 cut(s) 2758, 2871, 2997, 3138, 4170, 4218, 4696
Mox20I TGGCCA 3 cut(s) 406, 3098, 3718
Mph1103I ATGCAT 2 cut(s) 2531, 3245
MroXI GAANNNNTTC 1 cut(s) 3225
MscI TGGCCA 3 cut(s) 406, 3098, 3718
MslI CAYNNNNRTG 6 cut(s) 677, 857, 2760, 3417, 3556, 4098
Msp20I TGGCCA 3 cut(s) 406, 3098, 3718
MspA1I CMGCKG 3 cut(s) 844, 4639, 4752
MspCI CTTAAG 2 cut(s) 41, 1751
MspI CCGG 4 cut(s) 293, 1084, 1653, 2340
MspR9I CCNGG 1 cut(s) 4662
MunI CAATTG 6 cut(s) 807, 2393, 2858, 3968, 4171, 4181
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 1 cut(s) 4662
MvnI CGCG 2 cut(s) 733, 945
MwoI GCNNNNNNNGC 9 cut(s) 143, 239, 602, 812, 955, 2174, 2695, 2819, 3918
NdeI CATATG 1 cut(s) 497
NheI GCTAGC 1 cut(s) 4561
NlaIV GGNNCC 4 cut(s) 1645, 2445, 2480, 2767
NmeAIII GCCGAG 3 cut(s) 1272, 1414, 3033
NmuCI GTSAC 8 cut(s) 56, 1402, 1606, 1616, 2069, 2388, 3435, 3956
NsiI ATGCAT 2 cut(s) 2531, 3245
NspI RCATGY 9 cut(s) 443, 512, 1539, 1718, 2529, 2533, 2641, 3555, 3619
NspV TTCGAA 2 cut(s) 2649, 2961
OliI CACNNNNGTG 2 cut(s) 857, 3417
PaeI GCATGC 1 cut(s) 2533
PaeR7I CTCGAG 2 cut(s) 2298, 4466
PciI ACATGT 3 cut(s) 1535, 3551, 3615
PciSI GCTCTTC 1 cut(s) 4086
PcsI WCGNNNNNNNCGW 3 cut(s) 1133, 2145, 2680
PctI GAATGC 1 cut(s) 701
PdmI GAANNNNTTC 1 cut(s) 3225
PfeI GAWTC 3 cut(s) 1547, 3305, 4532
PflFI GACNNNGTC 1 cut(s) 542
PmaCI CACGTG 1 cut(s) 1616
PmlI CACGTG 1 cut(s) 1616
Ppu21I YACGTR 4 cut(s) 1616, 2140, 3329, 3956
PpuMI RGGWCCY 2 cut(s) 1004, 2766
PscI ACATGT 3 cut(s) 1535, 3551, 3615
PshAI GACNNNNGTC 1 cut(s) 4005
PshBI ATTAAT 3 cut(s) 2000, 2501, 4299
PsiI TTATAA 2 cut(s) 3366, 3459
Psp5II RGGWCCY 2 cut(s) 1004, 2766
Psp6I CCWGG 1 cut(s) 4660
PspCI CACGTG 1 cut(s) 1616
PspEI GGTNACC 1 cut(s) 3288
PspFI CCCAGC 2 cut(s) 1648, 4752
PspGI CCWGG 1 cut(s) 4660
PspN4I GGNNCC 4 cut(s) 1645, 2445, 2480, 2767
PspPI GGNCC 4 cut(s) 1004, 2766, 3259, 4680
PspPPI RGGWCCY 2 cut(s) 1004, 2766
PstI CTGCAG 1 cut(s) 783
PsuI RGATCY 7 cut(s) 687, 862, 1175, 1362, 3316, 4405, 4411
PsyI GACNNNGTC 1 cut(s) 542
PvuII CAGCTG 1 cut(s) 844
RsaI GTAC 6 cut(s) 654, 984, 1902, 2402, 2480, 3786
RsaNI GTAC 6 cut(s) 653, 983, 1901, 2401, 2479, 3785
RseI CAYNNNNRTG 6 cut(s) 677, 857, 2760, 3417, 3556, 4098
SalI GTCGAC 1 cut(s) 1461
SapI GCTCTTC 1 cut(s) 4086
Sau96I GGNCC 4 cut(s) 1004, 2766, 3259, 4680
ScaI AGTACT 2 cut(s) 1902, 2402
ScrFI CCNGG 1 cut(s) 4662
SduI GDGCHC 5 cut(s) 1648, 2415, 3414, 3658, 3870
SexAI ACCWGGT 1 cut(s) 4660
SfcI CTRYAG 1 cut(s) 779
Sfr274I CTCGAG 2 cut(s) 2298, 4466
SfuI TTCGAA 2 cut(s) 2649, 2961
SinI GGWCC 3 cut(s) 1004, 2766, 3259
SlaI CTCGAG 2 cut(s) 2298, 4466
SmiMI CAYNNNNRTG 6 cut(s) 677, 857, 2760, 3417, 3556, 4098
SmlI CTYRAG 9 cut(s) 41, 953, 1358, 1751, 2030, 2298, 2770, 3659, 4466
SmoI CTYRAG 9 cut(s) 41, 953, 1358, 1751, 2030, 2298, 2770, 3659, 4466
SnaBI TACGTA 1 cut(s) 2140
SphI GCATGC 1 cut(s) 2533
SspI AATATT 6 cut(s) 337, 1635, 2078, 2556, 3463, 3601
SspMI CTAG 8 cut(s) 95, 236, 278, 737, 3711, 3851, 4271, 4562
StyD4I CCNGG 1 cut(s) 4660
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 9 cut(s) 801, 1347, 1402, 2129, 2478, 3395, 3789, 3962, 4247
TaqII GACCGA 2 cut(s) 2088, 2453
TatI WGTACW 3 cut(s) 652, 1900, 2400
TauI GCSGC 2 cut(s) 701, 4752
TfiI GAWTC 3 cut(s) 1547, 3305, 4532
TscAI CASTG 9 cut(s) 148, 684, 804, 864, 1036, 3106, 3159, 3444, 4682
TseFI GTSAC 8 cut(s) 56, 1402, 1606, 1616, 2069, 2388, 3435, 3956
Tsp45I GTSAC 8 cut(s) 56, 1402, 1606, 1616, 2069, 2388, 3435, 3956
TspGWI ACGGA 4 cut(s) 1565, 2443, 3144, 4613
TspRI CASTG 9 cut(s) 148, 684, 804, 864, 1036, 3106, 3159, 3444, 4682
Tth111I GACNNNGTC 1 cut(s) 542
Vha464I CTTAAG 2 cut(s) 41, 1751
VneI GTGCAC 1 cut(s) 3410
VpaK11BI GGWCC 3 cut(s) 1004, 2766, 3259
VspI ATTAAT 3 cut(s) 2000, 2501, 4299
XapI RAATTY 7 cut(s) 205, 1982, 2449, 2963, 3225, 3520, 3826
XbaI TCTAGA 2 cut(s) 736, 4270
XceI RCATGY 9 cut(s) 443, 512, 1539, 1718, 2529, 2533, 2641, 3555, 3619
XcmI CCANNNNNNNNNTGG 1 cut(s) 1279
XhoI CTCGAG 2 cut(s) 2298, 4466
XmaJI CCTAGG 1 cut(s) 235
XmiI GTMKAC 2 cut(s) 1462, 3325
XmnI GAANNNNTTC 1 cut(s) 3225
XspI CTAG 8 cut(s) 95, 236, 278, 737, 3711, 3851, 4271, 4562
ZrmI AGTACT 2 cut(s) 1902, 2402
Zsp2I ATGCAT 2 cut(s) 2531, 3245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.