RchiOBHm_Chr1g0327521

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
16400980 .. 16406348
5369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55702

Sequence Viewer

Length: 4203 bp
ATGGGAGAGGCTGCACTTGGGGCATTCCTTCCGGTGCTGCTTGACAAGTTAGCGCATCGAGAGGTCTTTCAGTACTTCGGACGCCTTAAGGGGGTCGGCAAAAAGGTACTGGAGAAATGGACTAGAATGTTGACTGCAATTGAAGCGGTGCTGAGTGATGCGGAGGAGAAGCAACTAACACAAAAAGGAGTGAAAATGTGGCTAGATGATCTCAGAGATTTGGCTTATGATATTGAAGACATATTGGACATAGTTGCTACTAAAATGCTGAAGCGAAGGATAGAAAGACATCAAGGAAGCAGACGCAAGTTGTGGATCAGCTCACTTTCTAAACTTAAATTCAATTTTAGTTTGAACTCAGAGATCCAGAAGATTACTGATCGGCTAGAAGAGATATCTAATAGAGAAAAACAGTTTGGATTGAAGAAACTAGGAGTGTCTAAAAAGCCATGGAAAATGCCACCCACTACATCTCAACTAGATGGACCTGTGATCGGAAGGGATGAAGCAAAAGCAACAATTCTTGATGATTTGCTCTCAAAAGGCGAACAAAGTACCAACAATTTTCAGAATTTTCACGTGGTTTCCATTGTTGGTACGGCTGGACTAGGGAAGACAACACTTGCCAAACATGTATTCAACGATGCTGTAACAGAACAGTTTTACCCAAAGGGATGGGTGTCTGTGTCCGATGACTTCGACCTTCTAAGGGTGACAACTGCAGTTCTTGAATCTGTCACGTCAGGTGATGTGAAGAAATCCAAAGAGCTCAACTCAGTTCAGGAGAAGTTGAGTAAGGAATTGGCTGGCAGAAAGTTTTTAATTGTTCTAGATGATGTCTGGAATACATGCAACTATGATCAATGGACAACATTGCAGTCCGCGTTTCGTGTTGGAGCAGTAGGAAGCAAGATCATAGTGACGACACGTGATGCGAATGTTGCAAAGATGATGGGAGACACTGAACCTCATAACTTGGAGTCGATGTCAGAAGATGATTGTTGGAAAATCTTTGTCAACCATGCACTCTTAAACAACAGACCCCAAGATGTTGAGTTATTTAAGGAGAAAATTGTAGTAAAATGCAATGGATTGCCGTTGGCTGCAAGGACTCTTGGAGGTCTTTTACGTTGTAAAAGAGCAGACGAGTGGGAAGAAATATTAGACCACAAGATGTGGAATCTATCCGACCAGATGGGCATCCTTCCAGCATTACAATTGAGCTATCATTATCTCCATTCGAATTTGAAACGCTGCTTCACCTACTGTGCAATACTTCCAAATGATTACGAATTTGGGGAGATGCAAATGATCCTATTGTGGATGGCAGAGGGTTTGATTCCGCAACAACTAAAAGAAAATAAAGAAATGGAAGATTTGGGTCGTCATTATTTTCAAGAGTTGGTGTCTAGGTCATTATTTCAAAAATCAAGCAAAGAAAAGTCGCGATACATAATGCATGATCTCGTTACTGATTTGGCACGCTGGGCTGCAGGAAATTCATGTTCTAGATTGGAGGATATGCAGAATTATGACTCGCAACTTAGATGTTTGCCCAAGGTTCGTCATTCATCTTACATTTGTGGTGACTTTGATGGGGTCAAAAAGTTTGAGGTCTATTATGAAGATAGATGTTTGCGGACGTTCTTACCACTTTCACTTTCAGATTATAATTTTTTGGCTCATAAGGTTACTTCTGATTTATTGCCCAAACTCCAATACTTAAGAGTACTTTCTCTGTTTGGATATCAAATAGAAGAGCTGCCAAATACAATTGGTAAATTGAAGCATCTACGGTATCTTGATCTTTCTCACACTCAGATAAGAAGTTTGCCAGATTCAACAACCACTCTTTACAACTTGCAGACATTGATATTGGACAATTGTAAGCGATTGGAAGCGCTACCCCCAAGCATGAGGAATCTGGTAAATTTGCGTCATCTCATCAATTCAGGTACTTATTCATTGGAAGAAATGCCTCCTCAACTTAGTCGATTGATTAATCTCCAAACATTGCCTAATTTTATTATTGGCAAAGGTAGTGGATCAGGAGTAAGAGAGATTGGGTCATTGTTGCATCTGCAAGGGACATTGCACCTTTCAAGACTAGAGAATGTGATTTGTGTCGAGGATGCTAGGAGTGCCAAATTAAAGAGCAAGGAGAGGCTTGAAGCCCTGTTACTTGAATGGTCTTCTTCAAGTGCCTCAACAGAAATTGCAACAGTTGTGCTTGGCATGTTAGAACCACATAGCAAGCTCAAAGAGCTCACCATCCAAGGTTATGCTGGATTGAAATTTTCAACATGGATTGGAGATCCTTCATTTTCTAATATGGTGCGTGTAAAGTTAGATGATTGTGATCATTGTCGATTCTTGCCACCATTTGGACAATTGCCTTCTCTCAAAGAACTTTATATACAAAGAATGGATGCAGTGGAAAGTGTTGGTCTTGAGTTTTATGGAGAAGGTAGCGTGCCATTTCAAGCTTTAGAGATCCTTGAATTTCAACATCTGAATAACTGGAAGAAGTGGTCTTCTTGCCAACAAAATGAGGGGGTTGGGGTTTTTTCTTGCCTGAAAAATCTTTCCATCGAATGGTGCCCCAAATTGGAGGTTAGTCTACCGGAGAAGCTTGATTCATTAGCACAGCTACATATATGTGGATGTAAGGAATTGGTGGTTTCAATATCCAAATATAAACAGCTTCATGAATCAAACATCAAATATTGCAAGATGGTGGTTTACGACACAAGTACGGTTCAGTTTGAATTACTAGAATCCTTGTGTTTTTCAAAAATTTCAAAGTTGAGATTCCAAACAGAGACGTTCGTGAAAAGCTTGAAAAATGTTAAAGAGTTGAAGATTAGTGGTTGTGAGGAGCTAACATATTCCTTTCAGAATGAGGATAGATTACTGCAACACCTAATTTCTCTTGGTCGTTTGTATATTGAAGACAACTCTGGCCTTGTTGAAAAGCTAGGGAAAGAAGCAGAGCAGTTGGTGCAGTTGCAGATACTGGACTGCAAGCTTGAACGTCTGGAATTAAGCAAGTGTGGAAGCCTTTTGAAGGTACCAGAAGGATTGCATAACCTTACATCTCTTCAAAAGCTTTGTATAAATCAATGTTCAAGTCTTGCTTCTTTTCCGGATGTTGGTCTGCCACCCTGTCTTAAAGTCATAGAGATTCGGAAATGCGATTCTCTGTTGCACTTTGCAAAATACCAGATTCCTCCAAGCCTAAGAAGAATAGAGATTCAGAAATGTGAGAATTTGAAATCATTGATAGAGAAAGAGGAGGTGGTGGTGGATGGTTCTTGCTCGTCTTATTGTCTCGAGTATTTGGAGATAACGATGTGTCCATCTCTGCTGTTCTTATTATGCAAAAGCCAATTACCCAAGGCTCTTAAAGAGCTTATGATATGGGATTGTAGACAGCTGGAGTTAATAACTGAGAGGTTCCTCGATGACACCTATCAACTCGAAGAACTTGGCATCATGCACTGCCCAAACCTTAAATCCTTACCCGAGGGACTGTGCCACCTCACCAATCTTCAGACATTTTATATTGTGGATTGTCAGAGTCTTGTTTGGTTTCCGAGAATGAGTGTGTGGCCAAGAGAGACGACTATCGAATCTTGTGAGAAATTGGAGGTGGCACACTTGCTGAGAGACATGATGCACTCTAATAATCTTGGGCATTTGGGGATTGAATACTGTGAAGGTTTGACTACTACTTTCTTTCCCGCCAACCTAACATCACTTCAAATTCAGAAGATCAAGAATTGTAAGGCGCTGATGGAATATCAAGGGTTGCACAGACTCACCTCTTTGAGGAATTTGTGGATCTATGGTGAAGATGATCCAGGTCTGGTGTCGTTTCCACCTGCTAAGAATTCGAAGGAGAAGGAGATGCTGCTCCCCAGATCTCTTGTTGAATTGGCAATTCTAAACTTCCCAAATCTAAAGAAACTGAACAAGGGCTTTCAATTCCTCACCTCTCTTGAATGTCTTCGCATCTGCAACTGTCCGAAGCTTAAAATCATTCCAGAGGAGGGCCTGCCTCTTTCACTTACTCAACTTGATATTCATGAGTGTCCTCTACTTGAAGAGAGATGCAAAGGACGATACCGGCCCAAGATAGCACACATCCCTTGCGTACAAATTTGGCCGCCCCTCAATCCAGCCCTTTCCAGGTACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1400

Amino Acids

160.06

Weight (kDa)

7.03

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 7 - 99 1.3e-19 Rx N-terminal domain
NB-ARC PF00931 190 - 343 3e-35 NB-ARC domain
WHD_DRP PF23559 425 - 494 8.8e-23 Disease resistance protein Winged helix domain
LRR_14 PF23598 569 - 836 2.2e-23 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 686 - 809 5e-35 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1671
AarI CACCTGC 1 cut(s) 3892
Acc36I ACCTGC 1 cut(s) 3892
Acc65I GGTACC 1 cut(s) 3070
AccB1I GGYRCC 2 cut(s) 2598, 3070
AccB7I CCANNNNNTGG 2 cut(s) 2384, 2595
AccI GTMKAC 2 cut(s) 2620, 3430
AccII CGCG 2 cut(s) 884, 1447
AccIII TCCGGA 1 cut(s) 3145
AciI CCGC 7 cut(s) 146, 161, 882, 1343, 1639, 3744, 4169
AclWI GGATC 8 cut(s) 323, 358, 1306, 2053, 2309, 2488, 3851, 3854
AcoI YGGCCR 2 cut(s) 3611, 4166
AcuI CTGAAG 2 cut(s) 290, 3536
AcvI CACGTG 2 cut(s) 580, 929
AcyI GRCGYC 1 cut(s) 82
AfeI AGCGCT 1 cut(s) 1902
AflII CTTAAG 2 cut(s) 86, 1723
AflIII ACRYGT 2 cut(s) 631, 926
AjiI CACGTC 1 cut(s) 741
AjnI CCWGG 2 cut(s) 3862, 4190
AjuI GAANNNNNNNTTGG 4 cut(s) 399, 431, 620, 652
Alw21I GWGCWC 2 cut(s) 771, 2268
Alw26I GTCTC 5 cut(s) 951, 2816, 3335, 3614, 3663
AlwI GGATC 8 cut(s) 323, 358, 1306, 2053, 2309, 2488, 3851, 3854
AlwNI CAGNNNCTG 1 cut(s) 3016
Ama87I CYCGRG 2 cut(s) 3332, 3524
Aor13HI TCCGGA 1 cut(s) 3145
Aor51HI AGCGCT 1 cut(s) 1902
AoxI GGCC 5 cut(s) 2962, 3611, 4054, 4130, 4166
ApeKI GCWGC 7 cut(s) 11, 37, 1103, 1254, 1490, 1762, 3913
AseI ATTAAT 1 cut(s) 2001
Asp700I GAANNNNTTC 1 cut(s) 4008
Asp718I GGTACC 1 cut(s) 3070
AspLEI GCGC 3 cut(s) 55, 1903, 3793
AspS9I GGNCC 3 cut(s) 485, 4054, 4131
AsuHPI GGTGA 9 cut(s) 724, 758, 1252, 1598, 2260, 3535, 3814, 3863, 3985
AsuII TTCGAA 2 cut(s) 1241, 3896
AvaI CYCGRG 2 cut(s) 3332, 3524
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 2603
BalI TGGCCA 1 cut(s) 3613
BanI GGYRCC 2 cut(s) 2598, 3070
BanII GRGCYC 2 cut(s) 771, 2268
BarI GAAGNNNNNNTAC 2 cut(s) 2163, 2195
BbrPI CACGTG 2 cut(s) 580, 929
BbsI GAAGAC 6 cut(s) 243, 620, 2184, 2526, 2958, 4001
Bbv12I GWGCWC 2 cut(s) 771, 2268
BbvI GCAGC 6 cut(s) 24, 1090, 1241, 1477, 1749, 3900
BceAI ACGGC 2 cut(s) 615, 1081
BciT130I CCWGG 2 cut(s) 3864, 4192
BclI TGATCA 2 cut(s) 859, 2359
BcoDI GTCTC 5 cut(s) 951, 2816, 3335, 3614, 3663
BfmI CTRYAG 2 cut(s) 720, 1491
BfoI RGCGCY 2 cut(s) 1904, 3794
BfrI CTTAAG 2 cut(s) 86, 1723
BfuAI ACCTGC 1 cut(s) 3892
BglII AGATCT 1 cut(s) 3923
BisI GCNGC 8 cut(s) 12, 38, 1104, 1255, 1491, 1763, 3914, 4169
BlsI GCNGC 8 cut(s) 13, 39, 1105, 1256, 1492, 1764, 3915, 4170
BmcAI AGTACT 2 cut(s) 74, 1731
Bme1390I CCNGG 2 cut(s) 3864, 4192
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 2 cut(s) 3332, 3524
BmgBI CACGTC 1 cut(s) 741
BmgT120I GGNCC 3 cut(s) 485, 4054, 4131
BmiI GGNNCC 3 cut(s) 2600, 3072, 3458
BmrFI CCNGG 2 cut(s) 3864, 4192
BpiI GAAGAC 6 cut(s) 243, 620, 2184, 2526, 2958, 4001
BplI GAGNNNNNCTC 2 cut(s) 758, 790
BpmI CTGGAG 2 cut(s) 131, 3458
Bpu14I TTCGAA 2 cut(s) 1241, 3896
BpuEI CTTGAG 1 cut(s) 2471
BsaAI YACGTR 2 cut(s) 580, 929
BsaBI GATNNNNATC 2 cut(s) 1199, 2358
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 5 cut(s) 449, 1557, 2275, 3396, 3525
BsaWI WCCGGW 3 cut(s) 31, 2623, 3145
BsaXI ACNNNNNCTCC 2 cut(s) 971, 1001
Bse118I RCCGGY 1 cut(s) 4128
Bse1I ACTGG 3 cut(s) 114, 2525, 3021
Bse3DI GCAATG 4 cut(s) 872, 1093, 2012, 2090
Bse8I GATNNNNATC 2 cut(s) 1199, 2358
BseAI TCCGGA 1 cut(s) 3145
BseBI CCWGG 2 cut(s) 3864, 4192
BseDI CCNNGG 5 cut(s) 449, 1557, 2275, 3396, 3525
BseJI GATNNNNATC 2 cut(s) 1199, 2358
BseMI GCAATG 4 cut(s) 872, 1093, 2012, 2090
BseMII CTCAG 7 cut(s) 143, 226, 372, 789, 1832, 3441, 3656
BseNI ACTGG 3 cut(s) 114, 2525, 3021
BseRI GAGGAG 5 cut(s) 179, 1971, 2891, 3308, 4064
BseSI GKGCMC 1 cut(s) 2603
BseXI GCAGC 6 cut(s) 24, 1090, 1241, 1477, 1749, 3900
BseYI CCCAGC 1 cut(s) 1485
BsgI GTGCAG 1 cut(s) 3023
Bsh1236I CGCG 2 cut(s) 884, 1447
BshFI GGCC 5 cut(s) 2964, 3613, 4056, 4132, 4168
BshNI GGYRCC 2 cut(s) 2598, 3070
BsiHKAI GWGCWC 2 cut(s) 771, 2268
BsiHKCI CYCGRG 2 cut(s) 3332, 3524
BsiSI CCGG 4 cut(s) 32, 2624, 3146, 4129
BslFI GGGAC 2 cut(s) 2101, 3543
BsmAI GTCTC 5 cut(s) 951, 2816, 3335, 3614, 3663
BsmBI CGTCTC 2 cut(s) 2816, 3614
BsmFI GGGAC 2 cut(s) 2101, 3543
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 5 cut(s) 2964, 3613, 4056, 4132, 4168
BsoBI CYCGRG 2 cut(s) 3332, 3524
Bsp119I TTCGAA 2 cut(s) 1241, 3896
Bsp1286I GDGCHC 3 cut(s) 771, 2268, 2603
Bsp13I TCCGGA 1 cut(s) 3145
Bsp19I CCATGG 1 cut(s) 449
Bsp68I TCGCGA 1 cut(s) 1447
BspACI CCGC 7 cut(s) 146, 161, 882, 1343, 1639, 3744, 4169
BspANI GGCC 5 cut(s) 2964, 3613, 4056, 4132, 4168
BspCNI CTCAG 7 cut(s) 144, 225, 371, 788, 1831, 3442, 3657
BspEI TCCGGA 1 cut(s) 3145
BspFNI CGCG 2 cut(s) 884, 1447
BspHI TCATGA 2 cut(s) 2707, 4087
BspLI GGNNCC 3 cut(s) 2600, 3072, 3458
BspMAI CTGCAG 2 cut(s) 724, 1495
BspMI ACCTGC 1 cut(s) 3892
BspPI GGATC 8 cut(s) 323, 358, 1306, 2053, 2309, 2488, 3851, 3854
BspQI GCTCTTC 1 cut(s) 1752
BspT104I TTCGAA 2 cut(s) 1241, 3896
BspT107I GGYRCC 2 cut(s) 2598, 3070
BspTI CTTAAG 2 cut(s) 86, 1723
BsrDI GCAATG 4 cut(s) 872, 1093, 2012, 2090
BsrFI RCCGGY 1 cut(s) 4128
BsrI ACTGG 3 cut(s) 114, 2525, 3021
BssAI RCCGGY 1 cut(s) 4128
BssECI CCNNGG 5 cut(s) 449, 1557, 2275, 3396, 3525
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 4 cut(s) 449, 1557, 2275, 3396
Bst2UI CCWGG 2 cut(s) 3864, 4192
Bst4CI ACNGT 9 cut(s) 414, 660, 1268, 1797, 2224, 2758, 3534, 3716, 4025
Bst6I CTCTTC 4 cut(s) 384, 1752, 3105, 4101
BstACI GRCGYC 1 cut(s) 82
BstAFI CTTAAG 2 cut(s) 86, 1723
BstAPI GCANNNNNTGC 1 cut(s) 3001
BstBAI YACGTR 2 cut(s) 580, 929
BstBI TTCGAA 2 cut(s) 1241, 3896
BstC8I GCNNGC 6 cut(s) 808, 1483, 2255, 2474, 3026, 4058
BstDSI CCRYGG 1 cut(s) 449
BstENI CCTNNNNNAGG 2 cut(s) 3065, 3829
BstFNI CGCG 2 cut(s) 884, 1447
BstH2I RGCGCY 2 cut(s) 1904, 3794
BstHHI GCGC 3 cut(s) 55, 1903, 3793
BstMAI GTCTC 5 cut(s) 951, 2816, 3335, 3614, 3663
BstMWI GCNNNNNNNGC 7 cut(s) 20, 143, 941, 1487, 2141, 2263, 3001
BstNI CCWGG 2 cut(s) 3864, 4192
BstNSI RCATGY 3 cut(s) 635, 852, 2239
BstSCI CCNGG 2 cut(s) 3862, 4190
BstSFI CTRYAG 2 cut(s) 720, 1491
BstSLI GKGCMC 1 cut(s) 2603
BstUI CGCG 2 cut(s) 884, 1447
BstV1I GCAGC 6 cut(s) 24, 1090, 1241, 1477, 1749, 3900
BstV2I GAAGAC 6 cut(s) 243, 620, 2184, 2526, 2958, 4001
BstX2I RGATCY 5 cut(s) 363, 2314, 2493, 3843, 3923
BstXI CCANNNNNNTGG 1 cut(s) 675
BstYI RGATCY 5 cut(s) 363, 2314, 2493, 3843, 3923
BsuRI GGCC 5 cut(s) 2964, 3613, 4056, 4132, 4168
BtgI CCRYGG 1 cut(s) 449
BtrI CACGTC 1 cut(s) 741
BtsI GCAGTG 2 cut(s) 2439, 3499
BtsIMutI CAGTG 3 cut(s) 960, 2439, 3499
BtuMI TCGCGA 1 cut(s) 1447
BveI ACCTGC 1 cut(s) 3892
Cac8I GCNNGC 6 cut(s) 808, 1483, 2255, 2474, 3026, 4058
CaiI CAGNNNCTG 1 cut(s) 3016
CciI TCATGA 2 cut(s) 2707, 4087
CfoI GCGC 3 cut(s) 55, 1903, 3793
Cfr10I RCCGGY 1 cut(s) 4128
Cfr13I GGNCC 3 cut(s) 485, 4054, 4131
CseI GACGC 3 cut(s) 90, 312, 1925
CspCI CAANNNNNGTGG 2 cut(s) 2023, 2058
EaeI YGGCCR 2 cut(s) 3611, 4166
Eam1104I CTCTTC 4 cut(s) 384, 1752, 3105, 4101
EarI CTCTTC 4 cut(s) 384, 1752, 3105, 4101
Ecl136II GAGCTC 2 cut(s) 769, 2266
Eco130I CCWWGG 4 cut(s) 449, 1557, 2275, 3396
Eco24I GRGCYC 2 cut(s) 771, 2268
Eco32I GATATC 2 cut(s) 396, 1748
Eco47I GGWCC 1 cut(s) 485
Eco47III AGCGCT 1 cut(s) 1902
Eco53kI GAGCTC 2 cut(s) 769, 2266
Eco57I CTGAAG 2 cut(s) 290, 3536
Eco72I CACGTG 2 cut(s) 580, 929
Eco88I CYCGRG 2 cut(s) 3332, 3524
EcoICRI GAGCTC 2 cut(s) 769, 2266
EcoNI CCTNNNNNAGG 2 cut(s) 3065, 3829
EcoO109I RGGNCCY 1 cut(s) 4054
EcoRI GAATTC 1 cut(s) 3892
EcoRII CCWGG 2 cut(s) 3862, 4190
EcoRV GATATC 2 cut(s) 396, 1748
EcoT14I CCWWGG 4 cut(s) 449, 1557, 2275, 3396
EcoT22I ATGCAT 1 cut(s) 1461
EcoT38I GRGCYC 2 cut(s) 771, 2268
ErhI CCWWGG 4 cut(s) 449, 1557, 2275, 3396
Esp3I CGTCTC 2 cut(s) 2816, 3614
FalI AAGNNNNNCTT 2 cut(s) 3121, 3153
FaqI GGGAC 2 cut(s) 2101, 3543
FauI CCCGC 1 cut(s) 3751
FbaI TGATCA 2 cut(s) 859, 2359
FblI GTMKAC 2 cut(s) 2620, 3430
Fnu4HI GCNGC 8 cut(s) 12, 38, 1104, 1255, 1491, 1763, 3914, 4169
FriOI GRGCYC 2 cut(s) 771, 2268
Fsp4HI GCNGC 8 cut(s) 12, 38, 1104, 1255, 1491, 1763, 3914, 4169
GlaI GCGC 3 cut(s) 54, 1902, 3792
GluI GCNGC 8 cut(s) 12, 38, 1104, 1255, 1491, 1763, 3914, 4169
GsaI CCCAGC 1 cut(s) 1489
GsuI CTGGAG 2 cut(s) 131, 3458
HaeII RGCGCY 2 cut(s) 1904, 3794
HaeIII GGCC 5 cut(s) 2964, 3613, 4056, 4132, 4168
HapII CCGG 4 cut(s) 32, 2624, 3146, 4129
HgaI GACGC 3 cut(s) 90, 312, 1925
HhaI GCGC 3 cut(s) 55, 1903, 3793
Hin1I GRCGYC 1 cut(s) 82
Hin6I GCGC 3 cut(s) 53, 1901, 3791
HinP1I GCGC 3 cut(s) 53, 1901, 3791
HincII GTYRAC 2 cut(s) 132, 1018
HindII GTYRAC 2 cut(s) 132, 1018
HindIII AAGCTT 6 cut(s) 2484, 2630, 2836, 3026, 3107, 4031
HpaII CCGG 4 cut(s) 32, 2624, 3146, 4129
HphI GGTGA 9 cut(s) 724, 758, 1252, 1598, 2260, 3535, 3814, 3863, 3985
Hpy166II GTNNAC 5 cut(s) 132, 1018, 2621, 2743, 3431
Hpy8I GTNNAC 5 cut(s) 132, 1018, 2621, 2743, 3431
HpyCH4III ACNGT 9 cut(s) 414, 660, 1268, 1797, 2224, 2758, 3534, 3716, 4025
HpyCH4IV ACGT 7 cut(s) 579, 740, 928, 1129, 1643, 2825, 3034
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 143, 941, 1487, 2141, 2263, 3001
HpySE526I ACGT 7 cut(s) 579, 740, 928, 1129, 1643, 2825, 3034
Hsp92I GRCGYC 1 cut(s) 82
HspAI GCGC 3 cut(s) 53, 1901, 3791
Kpn2I TCCGGA 1 cut(s) 3145
KpnI GGTACC 1 cut(s) 3074
Ksp22I TGATCA 2 cut(s) 859, 2359
LguI GCTCTTC 1 cut(s) 1752
LmnI GCTCC 3 cut(s) 896, 2878, 3921
Lsp1109I GCAGC 6 cut(s) 24, 1090, 1241, 1477, 1749, 3900
MaeII ACGT 7 cut(s) 579, 740, 928, 1129, 1643, 2825, 3034
MaeIII GTNAC 8 cut(s) 649, 712, 736, 919, 1468, 1586, 1690, 2178
MfeI CAATTG 5 cut(s) 138, 1217, 1773, 1882, 2390
MflI RGATCY 5 cut(s) 363, 2314, 2493, 3843, 3923
MhlI GDGCHC 3 cut(s) 771, 2268, 2603
MlsI TGGCCA 1 cut(s) 3613
MluNI TGGCCA 1 cut(s) 3613
MlyI GAGTC 5 cut(s) 989, 1105, 1529, 3589, 3813
MmeI TCCRAC 3 cut(s) 874, 983, 1212
Mox20I TGGCCA 1 cut(s) 3613
Mph1103I ATGCAT 1 cut(s) 1461
MroI TCCGGA 1 cut(s) 3145
MroXI GAANNNNTTC 1 cut(s) 4008
MscI TGGCCA 1 cut(s) 3613
MslI CAYNNNNRTG 1 cut(s) 2658
Msp20I TGGCCA 1 cut(s) 3613
MspA1I CMGCKG 1 cut(s) 3436
MspCI CTTAAG 2 cut(s) 86, 1723
MspI CCGG 4 cut(s) 32, 2624, 3146, 4129
MspR9I CCNGG 2 cut(s) 3864, 4192
MunI CAATTG 5 cut(s) 138, 1217, 1773, 1882, 2390
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 2 cut(s) 3864, 4192
MvnI CGCG 2 cut(s) 884, 1447
MwoI GCNNNNNNNGC 7 cut(s) 20, 143, 941, 1487, 2141, 2263, 3001
NcoI CCATGG 1 cut(s) 449
NlaIV GGNNCC 3 cut(s) 2600, 3072, 3458
NmuCI GTSAC 4 cut(s) 712, 736, 919, 1586
NruI TCGCGA 1 cut(s) 1447
NsiI ATGCAT 1 cut(s) 1461
NspI RCATGY 3 cut(s) 635, 852, 2239
NspV TTCGAA 2 cut(s) 1241, 3896
PaeR7I CTCGAG 1 cut(s) 3332
PagI TCATGA 2 cut(s) 2707, 4087
PaqCI CACCTGC 1 cut(s) 3892
PciI ACATGT 1 cut(s) 631
PciSI GCTCTTC 1 cut(s) 1752
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 4008
PflMI CCANNNNNTGG 2 cut(s) 2384, 2595
PkrI GCNGC 8 cut(s) 13, 39, 1105, 1256, 1492, 1764, 3915, 4170
PleI GAGTC 5 cut(s) 988, 1105, 1529, 3588, 3813
PmaCI CACGTG 2 cut(s) 580, 929
PmlI CACGTG 2 cut(s) 580, 929
PpsI GAGTC 5 cut(s) 988, 1105, 1529, 3588, 3813
Ppu21I YACGTR 2 cut(s) 580, 929
PscI ACATGT 1 cut(s) 631
PshBI ATTAAT 1 cut(s) 2001
PsiI TTATAA 1 cut(s) 1671
Psp124BI GAGCTC 2 cut(s) 771, 2268
Psp6I CCWGG 2 cut(s) 3862, 4190
PspCI CACGTG 2 cut(s) 580, 929
PspFI CCCAGC 1 cut(s) 1485
PspGI CCWGG 2 cut(s) 3862, 4190
PspN4I GGNNCC 3 cut(s) 2600, 3072, 3458
PspPI GGNCC 3 cut(s) 485, 4054, 4131
PsrI GAACNNNNNNTAC 2 cut(s) 2400, 2432
PstI CTGCAG 2 cut(s) 724, 1495
PstNI CAGNNNCTG 1 cut(s) 3016
PsuI RGATCY 5 cut(s) 363, 2314, 2493, 3843, 3923
PvuII CAGCTG 1 cut(s) 3436
RruI TCGCGA 1 cut(s) 1447
RseI CAYNNNNRTG 1 cut(s) 2658
SacI GAGCTC 2 cut(s) 771, 2268
SapI GCTCTTC 1 cut(s) 1752
SatI GCNGC 8 cut(s) 12, 38, 1104, 1255, 1491, 1763, 3914, 4169
Sau96I GGNCC 3 cut(s) 485, 4054, 4131
ScaI AGTACT 2 cut(s) 74, 1731
SchI GAGTC 5 cut(s) 989, 1105, 1529, 3589, 3813
ScrFI CCNGG 2 cut(s) 3864, 4192
SduI GDGCHC 3 cut(s) 771, 2268, 2603
SfcI CTRYAG 2 cut(s) 720, 1491
Sfr274I CTCGAG 1 cut(s) 3332
SfuI TTCGAA 2 cut(s) 1241, 3896
SinI GGWCC 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 3332
SmiMI CAYNNNNRTG 1 cut(s) 2658
SmlI CTYRAG 4 cut(s) 86, 1723, 2450, 3332
SmoI CTYRAG 4 cut(s) 86, 1723, 2450, 3332
SsiI CCGC 7 cut(s) 146, 161, 882, 1343, 1639, 3744, 4169
SspI AATATT 2 cut(s) 1161, 2726
SstI GAGCTC 2 cut(s) 771, 2268
StyD4I CCNGG 2 cut(s) 3862, 4190
StyI CCWWGG 4 cut(s) 449, 1557, 2275, 3396
TaaI ACNGT 9 cut(s) 414, 660, 1268, 1797, 2224, 2758, 3534, 3716, 4025
TaiI ACGT 7 cut(s) 582, 743, 931, 1132, 1646, 2828, 3037
TatI WGTACW 2 cut(s) 72, 1729
TauI GCSGC 1 cut(s) 4171
TscAI CASTG 3 cut(s) 967, 2439, 3506
TseFI GTSAC 4 cut(s) 712, 736, 919, 1586
TseI GCWGC 7 cut(s) 11, 37, 1103, 1254, 1490, 1762, 3913
Tsp45I GTSAC 4 cut(s) 712, 736, 919, 1586
TspRI CASTG 3 cut(s) 967, 2439, 3506
Van91I CCANNNNNTGG 2 cut(s) 2384, 2595
Vha464I CTTAAG 2 cut(s) 86, 1723
VpaK11BI GGWCC 1 cut(s) 485
VspI ATTAAT 1 cut(s) 2001
XagI CCTNNNNNAGG 2 cut(s) 3065, 3829
XbaI TCTAGA 2 cut(s) 829, 1508
XceI RCATGY 3 cut(s) 635, 852, 2239
XcmI CCANNNNNNNNNTGG 1 cut(s) 2282
XhoI CTCGAG 1 cut(s) 3332
XmiI GTMKAC 2 cut(s) 2620, 3430
XmnI GAANNNNTTC 1 cut(s) 4008
ZrmI AGTACT 2 cut(s) 74, 1731
Zsp2I ATGCAT 1 cut(s) 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.