Rmu_ssc0000042.1_g000040

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000042.1
OG0000070
Physical Location & Seq
Reverse (-)
215308 .. 219569
4262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000042.1_g000040.1.cds

Sequence Viewer

Length: 3954 bp
atgggagaggctgtacttggggcattccttccggtgctgctcgacaagttagcgcatcgagaggtctttcagtacttcggacgccttaagggggtcagcaaaaaggcactggagaaatggactaaaatgttgactgcaattgaagcggtgctgagtgatgcggaggagaagcaactaacacaaaaaggagtgaaaatgtggctagatgatctcagagatttggcttatgatattgaagacatattggacatagttgctactaaaatgctgaagcgaaggatagaaagacatcaaggaagcagacgcaagttatggatcagctcactttctaaacttaaattcaattctagtttgaactcagagatccagaagattactgatcggctagaagagatatctaatagagaaaaacagtttggattgaagaaactaggagtgtctaaaaagccatggaaaatgccacccactacatctcaactagatggacctgtgatcggaagggatgaagcaaaagcaaaaattcttgatgatttgctctcaaaaggcgaacaaagtaccaacaattttcagaattttcatttggtttccattgttggtacggctggactagggaagacaacacttgccaaacatgtattcaacgatgctgtaacagaacagttttacccaaagggatgggtgtctgtgtccgatgacttcgaccttctaagggtgacaactgcagttcttgaatctgtcacgtcaggtgatgtgaagaaatccaaagagctcaactcagttcaggagaagttgagtaaggaattggctggcagaaagtttttaattgttctagatgatgtctggaaactctggaatacatgcaactatgatcaatggacaacattgcagtccgcgtttcgtgttggagcagtaggaagcaagatcatagtgacgacacgtgatgcgaatgttgcaaagatgatgggagacactgaacctcataacttggagtcgatgtcagaagatgattgttggaaaatctttgtcaaccatgcactcttaaacaacagaccccaagatgttgagttatttaaggagaaaattgtagtaaaatgcaatggattgccgttggctgcaaggactcttggaggtcttttacgttgtaaaagagcagacgagtgggaagaaatattagaccacaagatgtggaatctatccgaccagatgggcatccttccagcattacaattgagctatcattatctccattcgaatttgaaacgctgcttcacctactgtgcaatacttccaaatgattacgaatttggggagatgcaaatgatcctattgtggatggcagagggtttgattccgcaacaactaaaagaaaataaagaaatggaagatttgggtcgtcattattttcaagagttggtgtctaggtcattatttcaaaaatcaagcaaagaaaagtcgcgatacataatgcatgatctcgttactgatttggcacgctgggctgcaggaaattcatgttctagattggaggatatgcagaattatgactcgcaacttatatgtttgcccaagacattgatattggacaattgtgatcgattgaaggcattaccaccaagcatgaggaatctagtaaatttgcgtcatctcatcaattcaaatacatcttcattggaagaaatgacacctcaacttagtcgattgactaatctccaaccattgcctaattttgttattggcaaaggtagtggatcaggagtaggagagattgggtcattgttgcatctgcaagggacattgcacctctcaagactagagaatgtgatttgtgtcgaggatgctaggagtgccaaattaaagagcaaggagaggcttgaagccctattacttgaatggtcttcttcgagtgtctcaacagaaattgcagcagttgtgcttggcatgttacaacctcatagtaagctcaaagagctcaccatcaaaggttatgctggattgaaattttcaacatggattggagatctttcattctctaatatggtgcgtgtaaagttagatgattgtgatcattgtcaattcttgccaccatttggacaattgccttctctcaaagaactttatatacaaagaatggatgcggttgaaagtgttggtcttgagttttatggagaaggtaacttgccgtttcaagctttagagatccttgaatttcaatatctgattaactggaagaagtggtctccttgccaacaaaatgagggggttggggttttttcttgcctgaaaaagctttccatcagaggctgccccaaattggagggtagtctaccggagaagcttgattcattagcacagctgcagatatgtacatgtgacgaattggtggtttcaatatcaaaatataaacagcttcatgaatcaaacatcaaatattgcaagatggtggtttacgacacaagtacggttcagtttgacttactagaatccttgtgtttttcaaatatttcagagttgagattccaaacagagacgttcatgaaaagcttgaaaaatgttaaagagttgaagattagtggctgtgaggagctaacatgttcctttcagaatgaggatagattactgcaacacttgatttctgttggtcgtttgtatattgaagacaactctggccttgttgaaaagctagggaaagaagcagagcagttggtgcagttgcaaatactggattgcaagcttgaatgtctggaattaagcaagtgtggaagccttttgaaggttccagaaggattgcataaccttacatctcttcaaaagctttgtataaatcaatgttcaagtcttgtttcttttccggatgttggtctgccaccctgtcttaaagtcatagagattcggaattgcgattctctgttgtactttgcaaaataccagattcctccaagcctaagaagaatagagattcagaaatgtgagaatttgaaatcattgatagagaaagaggaggtggtggtggatggttcttgctcgtcttattgtctcgagtatttggagatatcgatgtgtccatctctgttgttcttattatgcaaaagccaattacccagggctcttaaaaagctaaagatacgggattgtagacagctggagttaataactgagaggttcctcgatgacacctatcaactcgaagaacttggcatcatgcactgcccaaaccttaaatccttacccgagggactgtgccacctcaccaatcttcagacattttctattgtggattgtcagagtcttgtttggtttccgagaatgagtgtgtggccaagagagacgactatcgaatcttgtgagaaattggaggtggcacacttgctgagagacatgatgcactctaataatcttgggcatttggggattgattactgtgaaggtttgactactactttctttcccgccaacctaacatcacttcaaattcagaagatcaagaattgtaaggcgctgatggaatatcaagggttgcacagactcacctctttgaggaatttgtggatctatggtgaagatgatccaggtctggtgtcgtttccaccggctaagaattcgaaggagaaggagatgctgctccccagatctcttgttgaattggcaattctaaacttcccaaatctaaagaaactgaacaagggctttcaattcctcacctctcttgaatgtcttcgcatctgcaactgtccgaagcttaaaatcattccagaggagggcctgcctctttcacttactcaacttgatattcatgagtgtcctctacttgaagagagatgcaaaggacgataccggcccaagatagcacacatcccttgcgtacaaatttggccgcccctcaatccagccctttccaggtacgaacgtgtaatttcagacaacatccgcactgatgataatgtgtctatcaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1317

Amino Acids

149.92

Weight (kDa)

6.84

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 2087
AccI GTMKAC 2 cut(s) 2323, 3133
AccII CGCG 2 cut(s) 893, 1456
AccIII TCCGGA 1 cut(s) 2848
AciI CCGC 8 cut(s) 146, 161, 891, 1352, 2135, 3447, 3872, 3925
AclWI GGATC 7 cut(s) 323, 358, 1315, 1756, 2191, 3554, 3557
AcoI YGGCCR 2 cut(s) 3314, 3869
AcuI CTGAAG 2 cut(s) 290, 3239
AcvI CACGTG 1 cut(s) 938
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 9 cut(s) 15, 74, 556, 598, 2365, 2458, 2912, 3861, 3899
AflII CTTAAG 1 cut(s) 86
AflIII ACRYGT 5 cut(s) 631, 935, 2366, 2588, 3904
AjiI CACGTC 1 cut(s) 741
AjnI CCWGG 3 cut(s) 3098, 3565, 3893
AjuI GAANNNNNNNTTGG 6 cut(s) 399, 431, 563, 595, 620, 652
Alw21I GWGCWC 2 cut(s) 771, 1971
Alw26I GTCTC 7 cut(s) 960, 1912, 2241, 2519, 3038, 3317, 3366
AlwI GGATC 7 cut(s) 323, 358, 1315, 1756, 2191, 3554, 3557
AlwNI CAGNNNCTG 1 cut(s) 2301
Ama87I CYCGRG 2 cut(s) 3035, 3227
Aor13HI TCCGGA 1 cut(s) 2848
AoxI GGCC 5 cut(s) 2665, 3314, 3757, 3833, 3869
ApeKI GCWGC 8 cut(s) 37, 1112, 1263, 1499, 1922, 2301, 2353, 3616
Asp700I GAANNNNTTC 1 cut(s) 3711
AspLEI GCGC 2 cut(s) 55, 3496
AspS9I GGNCC 3 cut(s) 485, 3757, 3834
AsuHPI GGTGA 8 cut(s) 724, 758, 1261, 1963, 3238, 3517, 3566, 3688
AsuII TTCGAA 2 cut(s) 1250, 3599
AvaI CYCGRG 2 cut(s) 3035, 3227
AvaII GGWCC 1 cut(s) 485
BaeI ACNNNNGTAYC 2 cut(s) 3889, 3922
BalI TGGCCA 1 cut(s) 3316
BanII GRGCYC 3 cut(s) 771, 1971, 3106
BarI GAAGNNNNNNTAC 2 cut(s) 1866, 1898
BbrPI CACGTG 1 cut(s) 938
BbsI GAAGAC 5 cut(s) 243, 620, 1887, 2661, 3704
Bbv12I GWGCWC 2 cut(s) 771, 1971
BbvI GCAGC 8 cut(s) 24, 1099, 1250, 1486, 1934, 2288, 2340, 3603
BceAI ACGGC 3 cut(s) 615, 1090, 2164
BciT130I CCWGG 3 cut(s) 3100, 3567, 3895
BclI TGATCA 2 cut(s) 868, 2062
BcoDI GTCTC 7 cut(s) 960, 1912, 2241, 2519, 3038, 3317, 3366
BfmI CTRYAG 3 cut(s) 720, 1500, 2354
BfoI RGCGCY 1 cut(s) 3497
BfrI CTTAAG 1 cut(s) 86
BglII AGATCT 2 cut(s) 2017, 3626
BisI GCNGC 9 cut(s) 38, 1113, 1264, 1500, 1923, 2302, 2354, 3617, 3872
BlsI GCNGC 9 cut(s) 39, 1114, 1265, 1501, 1924, 2303, 2355, 3618, 3873
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 3 cut(s) 3100, 3567, 3895
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 2 cut(s) 3035, 3227
BmgBI CACGTC 1 cut(s) 741
BmgT120I GGNCC 3 cut(s) 485, 3757, 3834
BmiI GGNNCC 2 cut(s) 2775, 3161
BmrFI CCNGG 3 cut(s) 3100, 3567, 3895
BpiI GAAGAC 5 cut(s) 243, 620, 1887, 2661, 3704
BplI GAGNNNNNCTC 2 cut(s) 758, 790
BpmI CTGGAG 2 cut(s) 131, 3161
Bpu14I TTCGAA 2 cut(s) 1250, 3599
BpuEI CTTGAG 2 cut(s) 1789, 2174
Bsa29I ATCGAT 2 cut(s) 1594, 3053
BsaAI YACGTR 1 cut(s) 938
BsaBI GATNNNNATC 2 cut(s) 1208, 2061
BsaHI GRCGYC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 2241
BsaJI CCNNGG 4 cut(s) 449, 3098, 3099, 3228
BsaWI WCCGGW 3 cut(s) 31, 2326, 2848
BsaXI ACNNNNNCTCC 3 cut(s) 27, 980, 1010
Bse118I RCCGGY 2 cut(s) 3586, 3831
Bse1I ACTGG 3 cut(s) 114, 2228, 2724
Bse3DI GCAATG 4 cut(s) 881, 1102, 1715, 1793
Bse8I GATNNNNATC 2 cut(s) 1208, 2061
BseAI TCCGGA 1 cut(s) 2848
BseBI CCWGG 3 cut(s) 3100, 3567, 3895
BseCI ATCGAT 2 cut(s) 1594, 3053
BseDI CCNNGG 4 cut(s) 449, 3098, 3099, 3228
BseJI GATNNNNATC 2 cut(s) 1208, 2061
BseMI GCAATG 4 cut(s) 881, 1102, 1715, 1793
BseMII CTCAG 6 cut(s) 143, 226, 372, 789, 3144, 3359
BseNI ACTGG 3 cut(s) 114, 2228, 2724
BseRI GAGGAG 4 cut(s) 179, 2594, 3011, 3767
BseXI GCAGC 8 cut(s) 24, 1099, 1250, 1486, 1934, 2288, 2340, 3603
BseYI CCCAGC 1 cut(s) 1494
BsgI GTGCAG 1 cut(s) 2726
Bsh1236I CGCG 2 cut(s) 893, 1456
BshFI GGCC 5 cut(s) 2667, 3316, 3759, 3835, 3871
BshVI ATCGAT 2 cut(s) 1594, 3053
BsiHKAI GWGCWC 2 cut(s) 771, 1971
BsiHKCI CYCGRG 2 cut(s) 3035, 3227
BsiSI CCGG 5 cut(s) 32, 2327, 2849, 3587, 3832
BslFI GGGAC 2 cut(s) 1804, 3246
BsmAI GTCTC 7 cut(s) 960, 1912, 2241, 2519, 3038, 3317, 3366
BsmBI CGTCTC 2 cut(s) 2519, 3317
BsmFI GGGAC 2 cut(s) 1804, 3246
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 5 cut(s) 2667, 3316, 3759, 3835, 3871
Bso31I GGTCTC 1 cut(s) 2241
BsoBI CYCGRG 2 cut(s) 3035, 3227
Bsp119I TTCGAA 2 cut(s) 1250, 3599
Bsp1286I GDGCHC 3 cut(s) 771, 1971, 3106
Bsp13I TCCGGA 1 cut(s) 2848
Bsp1407I TGTACA 1 cut(s) 2363
Bsp19I CCATGG 1 cut(s) 449
Bsp68I TCGCGA 1 cut(s) 1456
BspACI CCGC 8 cut(s) 146, 161, 891, 1352, 2135, 3447, 3872, 3925
BspANI GGCC 5 cut(s) 2667, 3316, 3759, 3835, 3871
BspCNI CTCAG 6 cut(s) 144, 225, 371, 788, 3145, 3360
BspDI ATCGAT 2 cut(s) 1594, 3053
BspEI TCCGGA 1 cut(s) 2848
BspFNI CGCG 2 cut(s) 893, 1456
BspHI TCATGA 3 cut(s) 2410, 2532, 3790
BspLI GGNNCC 2 cut(s) 2775, 3161
BspMAI CTGCAG 3 cut(s) 724, 1504, 2358
BspPI GGATC 7 cut(s) 323, 358, 1315, 1756, 2191, 3554, 3557
BspT104I TTCGAA 2 cut(s) 1250, 3599
BspTI CTTAAG 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 2241
BsrDI GCAATG 4 cut(s) 881, 1102, 1715, 1793
BsrFI RCCGGY 2 cut(s) 3586, 3831
BsrGI TGTACA 1 cut(s) 2363
BsrI ACTGG 3 cut(s) 114, 2228, 2724
BssAI RCCGGY 2 cut(s) 3586, 3831
BssECI CCNNGG 4 cut(s) 449, 3098, 3099, 3228
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 3 cut(s) 3100, 3567, 3895
Bst4CI ACNGT 7 cut(s) 414, 660, 1277, 2461, 3237, 3419, 3728
Bst6I CTCTTC 3 cut(s) 384, 2808, 3804
BstACI GRCGYC 1 cut(s) 82
BstAFI CTTAAG 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 2704
BstAUI TGTACA 1 cut(s) 2363
BstBAI YACGTR 1 cut(s) 938
BstBI TTCGAA 2 cut(s) 1250, 3599
BstC8I GCNNGC 4 cut(s) 808, 1492, 2729, 3761
BstDSI CCRYGG 1 cut(s) 449
BstENI CCTNNNNNAGG 2 cut(s) 2768, 3532
BstFNI CGCG 2 cut(s) 893, 1456
BstH2I RGCGCY 1 cut(s) 3497
BstHHI GCGC 2 cut(s) 55, 3496
BstMAI GTCTC 7 cut(s) 960, 1912, 2241, 2519, 3038, 3317, 3366
BstMWI GCNNNNNNNGC 6 cut(s) 143, 950, 1496, 1844, 1966, 2704
BstNI CCWGG 3 cut(s) 3100, 3567, 3895
BstNSI RCATGY 5 cut(s) 635, 861, 1942, 2370, 2592
BstSCI CCNGG 3 cut(s) 3098, 3565, 3893
BstSFI CTRYAG 3 cut(s) 720, 1500, 2354
BstUI CGCG 2 cut(s) 893, 1456
BstV1I GCAGC 8 cut(s) 24, 1099, 1250, 1486, 1934, 2288, 2340, 3603
BstV2I GAAGAC 5 cut(s) 243, 620, 1887, 2661, 3704
BstX2I RGATCY 5 cut(s) 363, 2017, 2196, 3546, 3626
BstXI CCANNNNNNTGG 1 cut(s) 675
BstYI RGATCY 5 cut(s) 363, 2017, 2196, 3546, 3626
Bsu15I ATCGAT 2 cut(s) 1594, 3053
BsuRI GGCC 5 cut(s) 2667, 3316, 3759, 3835, 3871
BsuTUI ATCGAT 2 cut(s) 1594, 3053
BtgI CCRYGG 1 cut(s) 449
BtrI CACGTC 1 cut(s) 741
BtsI GCAGTG 1 cut(s) 3202
BtsIMutI CAGTG 4 cut(s) 107, 969, 3202, 3927
BtuMI TCGCGA 1 cut(s) 1456
Cac8I GCNNGC 4 cut(s) 808, 1492, 2729, 3761
CaiI CAGNNNCTG 1 cut(s) 2301
CciI TCATGA 3 cut(s) 2410, 2532, 3790
CfoI GCGC 2 cut(s) 55, 3496
Cfr10I RCCGGY 2 cut(s) 3586, 3831
Cfr13I GGNCC 3 cut(s) 485, 3757, 3834
ClaI ATCGAT 2 cut(s) 1594, 3053
CseI GACGC 3 cut(s) 90, 312, 1628
Csp6I GTAC 9 cut(s) 14, 73, 555, 597, 2364, 2457, 2911, 3860, 3898
CspCI CAANNNNNGTGG 2 cut(s) 1726, 1761
CviQI GTAC 9 cut(s) 14, 73, 555, 597, 2364, 2457, 2911, 3860, 3898
EaeI YGGCCR 2 cut(s) 3314, 3869
Eam1104I CTCTTC 3 cut(s) 384, 2808, 3804
EarI CTCTTC 3 cut(s) 384, 2808, 3804
Ecl136II GAGCTC 2 cut(s) 769, 1969
Eco130I CCWWGG 1 cut(s) 449
Eco24I GRGCYC 3 cut(s) 771, 1971, 3106
Eco31I GGTCTC 1 cut(s) 2241
Eco32I GATATC 2 cut(s) 396, 3051
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 2 cut(s) 769, 1969
Eco57I CTGAAG 2 cut(s) 290, 3239
Eco72I CACGTG 1 cut(s) 938
Eco88I CYCGRG 2 cut(s) 3035, 3227
EcoICRI GAGCTC 2 cut(s) 769, 1969
EcoNI CCTNNNNNAGG 2 cut(s) 2768, 3532
EcoO109I RGGNCCY 1 cut(s) 3757
EcoRI GAATTC 1 cut(s) 3595
EcoRII CCWGG 3 cut(s) 3098, 3565, 3893
EcoRV GATATC 2 cut(s) 396, 3051
EcoT14I CCWWGG 1 cut(s) 449
EcoT22I ATGCAT 1 cut(s) 1470
EcoT38I GRGCYC 3 cut(s) 771, 1971, 3106
ErhI CCWWGG 1 cut(s) 449
Esp3I CGTCTC 2 cut(s) 2519, 3317
FaqI GGGAC 2 cut(s) 1804, 3246
FauI CCCGC 1 cut(s) 3454
FbaI TGATCA 2 cut(s) 868, 2062
FblI GTMKAC 2 cut(s) 2323, 3133
Fnu4HI GCNGC 9 cut(s) 38, 1113, 1264, 1500, 1923, 2302, 2354, 3617, 3872
FriOI GRGCYC 3 cut(s) 771, 1971, 3106
Fsp4HI GCNGC 9 cut(s) 38, 1113, 1264, 1500, 1923, 2302, 2354, 3617, 3872
GlaI GCGC 2 cut(s) 54, 3495
GluI GCNGC 9 cut(s) 38, 1113, 1264, 1500, 1923, 2302, 2354, 3617, 3872
GsaI CCCAGC 1 cut(s) 1498
GsuI CTGGAG 2 cut(s) 131, 3161
HaeII RGCGCY 1 cut(s) 3497
HaeIII GGCC 5 cut(s) 2667, 3316, 3759, 3835, 3871
HapII CCGG 5 cut(s) 32, 2327, 2849, 3587, 3832
HgaI GACGC 3 cut(s) 90, 312, 1628
HhaI GCGC 2 cut(s) 55, 3496
Hin1I GRCGYC 1 cut(s) 82
Hin6I GCGC 2 cut(s) 53, 3494
HinP1I GCGC 2 cut(s) 53, 3494
HincII GTYRAC 2 cut(s) 132, 1027
HindII GTYRAC 2 cut(s) 132, 1027
HindIII AAGCTT 7 cut(s) 2187, 2285, 2333, 2539, 2729, 2810, 3734
HpaII CCGG 5 cut(s) 32, 2327, 2849, 3587, 3832
HphI GGTGA 8 cut(s) 724, 758, 1261, 1963, 3238, 3517, 3566, 3688
Hpy166II GTNNAC 5 cut(s) 132, 1027, 2324, 2446, 3134
Hpy8I GTNNAC 5 cut(s) 132, 1027, 2324, 2446, 3134
HpyCH4III ACNGT 7 cut(s) 414, 660, 1277, 2461, 3237, 3419, 3728
HpyCH4IV ACGT 5 cut(s) 740, 937, 1138, 2528, 3904
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 950, 1496, 1844, 1966, 2704
HpySE526I ACGT 5 cut(s) 740, 937, 1138, 2528, 3904
Hsp92I GRCGYC 1 cut(s) 82
HspAI GCGC 2 cut(s) 53, 3494
Kpn2I TCCGGA 1 cut(s) 2848
Ksp22I TGATCA 2 cut(s) 868, 2062
LmnI GCTCC 3 cut(s) 905, 2581, 3624
Lsp1109I GCAGC 8 cut(s) 24, 1099, 1250, 1486, 1934, 2288, 2340, 3603
MaeII ACGT 5 cut(s) 740, 937, 1138, 2528, 3904
MaeIII GTNAC 8 cut(s) 649, 712, 736, 928, 1477, 1941, 2171, 2369
MfeI CAATTG 4 cut(s) 138, 1226, 1585, 2093
MflI RGATCY 5 cut(s) 363, 2017, 2196, 3546, 3626
MhlI GDGCHC 3 cut(s) 771, 1971, 3106
MlsI TGGCCA 1 cut(s) 3316
MluNI TGGCCA 1 cut(s) 3316
MlyI GAGTC 5 cut(s) 998, 1114, 1538, 3292, 3516
MmeI TCCRAC 4 cut(s) 883, 992, 1221, 1735
Mox20I TGGCCA 1 cut(s) 3316
Mph1103I ATGCAT 1 cut(s) 1470
MroI TCCGGA 1 cut(s) 2848
MroXI GAANNNNTTC 1 cut(s) 3711
MscI TGGCCA 1 cut(s) 3316
Msp20I TGGCCA 1 cut(s) 3316
MspA1I CMGCKG 2 cut(s) 2353, 3139
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 5 cut(s) 32, 2327, 2849, 3587, 3832
MspR9I CCNGG 3 cut(s) 3100, 3567, 3895
MunI CAATTG 4 cut(s) 138, 1226, 1585, 2093
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 3 cut(s) 3100, 3567, 3895
MvnI CGCG 2 cut(s) 893, 1456
MwoI GCNNNNNNNGC 6 cut(s) 143, 950, 1496, 1844, 1966, 2704
NcoI CCATGG 1 cut(s) 449
NlaIV GGNNCC 2 cut(s) 2775, 3161
NmuCI GTSAC 4 cut(s) 712, 736, 928, 2369
NruI TCGCGA 1 cut(s) 1456
NsiI ATGCAT 1 cut(s) 1470
NspI RCATGY 5 cut(s) 635, 861, 1942, 2370, 2592
NspV TTCGAA 2 cut(s) 1250, 3599
PaeR7I CTCGAG 1 cut(s) 3035
PagI TCATGA 3 cut(s) 2410, 2532, 3790
PasI CCCWGGG 1 cut(s) 3099
PciI ACATGT 3 cut(s) 631, 2366, 2588
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 3711
PflMI CCANNNNNTGG 1 cut(s) 2087
PkrI GCNGC 9 cut(s) 39, 1114, 1265, 1501, 1924, 2303, 2355, 3618, 3873
PleI GAGTC 5 cut(s) 997, 1114, 1538, 3291, 3516
PmaCI CACGTG 1 cut(s) 938
PmlI CACGTG 1 cut(s) 938
PpsI GAGTC 5 cut(s) 997, 1114, 1538, 3291, 3516
Ppu21I YACGTR 1 cut(s) 938
PscI ACATGT 3 cut(s) 631, 2366, 2588
Psp124BI GAGCTC 2 cut(s) 771, 1971
Psp6I CCWGG 3 cut(s) 3098, 3565, 3893
PspCI CACGTG 1 cut(s) 938
PspFI CCCAGC 1 cut(s) 1494
PspGI CCWGG 3 cut(s) 3098, 3565, 3893
PspN4I GGNNCC 2 cut(s) 2775, 3161
PspPI GGNCC 3 cut(s) 485, 3757, 3834
PsrI GAACNNNNNNTAC 2 cut(s) 2103, 2135
PstI CTGCAG 3 cut(s) 724, 1504, 2358
PstNI CAGNNNCTG 1 cut(s) 2301
PsuI RGATCY 5 cut(s) 363, 2017, 2196, 3546, 3626
PvuII CAGCTG 2 cut(s) 2353, 3139
RruI TCGCGA 1 cut(s) 1456
RsaI GTAC 9 cut(s) 15, 74, 556, 598, 2365, 2458, 2912, 3861, 3899
RsaNI GTAC 9 cut(s) 14, 73, 555, 597, 2364, 2457, 2911, 3860, 3898
SacI GAGCTC 2 cut(s) 771, 1971
SatI GCNGC 9 cut(s) 38, 1113, 1264, 1500, 1923, 2302, 2354, 3617, 3872
Sau96I GGNCC 3 cut(s) 485, 3757, 3834
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 5 cut(s) 998, 1114, 1538, 3292, 3516
ScrFI CCNGG 3 cut(s) 3100, 3567, 3895
SduI GDGCHC 3 cut(s) 771, 1971, 3106
SfcI CTRYAG 3 cut(s) 720, 1500, 2354
Sfr274I CTCGAG 1 cut(s) 3035
SfuI TTCGAA 2 cut(s) 1250, 3599
SinI GGWCC 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 3035
SmlI CTYRAG 4 cut(s) 86, 1804, 2153, 3035
SmoI CTYRAG 4 cut(s) 86, 1804, 2153, 3035
SsiI CCGC 8 cut(s) 146, 161, 891, 1352, 2135, 3447, 3872, 3925
SspI AATATT 3 cut(s) 1170, 2429, 2500
SstI GAGCTC 2 cut(s) 771, 1971
StyD4I CCNGG 3 cut(s) 3098, 3565, 3893
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 7 cut(s) 414, 660, 1277, 2461, 3237, 3419, 3728
TaiI ACGT 5 cut(s) 743, 940, 1141, 2531, 3907
TatI WGTACW 4 cut(s) 13, 72, 2363, 2910
TauI GCSGC 1 cut(s) 3874
TscAI CASTG 4 cut(s) 114, 976, 3209, 3934
TseFI GTSAC 4 cut(s) 712, 736, 928, 2369
TseI GCWGC 8 cut(s) 37, 1112, 1263, 1499, 1922, 2301, 2353, 3616
Tsp45I GTSAC 4 cut(s) 712, 736, 928, 2369
TspRI CASTG 4 cut(s) 114, 976, 3209, 3934
Van91I CCANNNNNTGG 1 cut(s) 2087
Vha464I CTTAAG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 485
XagI CCTNNNNNAGG 2 cut(s) 2768, 3532
XbaI TCTAGA 2 cut(s) 829, 1517
XceI RCATGY 5 cut(s) 635, 861, 1942, 2370, 2592
XhoI CTCGAG 1 cut(s) 3035
XmiI GTMKAC 2 cut(s) 2323, 3133
XmnI GAANNNNTTC 1 cut(s) 3711
ZrmI AGTACT 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.