Rmu_co8489965.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8489965.1
OG0000070
Physical Location & Seq
Forward (+)
17 .. 2101
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8489965.1_g000001.1.cds

Sequence Viewer

Length: 2085 bp
atgcctgcacaactaggtcagttgactaatctacaaacactgtgcaagtttttggtgggcaaaggtagcgagtcagggataagcgagatagggcccttattgaatcttcgagggacattgtccatttcaagactgcagaaggtgaatgatgttgaggaagcaaggagggctgacttaactggaaagaaagggcttgatgcattggaactagaatggaatggcataggaaacaaggaattagaggtgcttgacatgttaaaacctcatgaaaagctcagaaaattcatgatcaagggctatggtggtttgacgtttccaaaatggataggatatccttcattcgttgagatgatggttgtaaggttagagaattgtaaaaaatgtcggttcttgcctccacttggacaattatgttctctcaaagaactgtacataactggaatgtctgaagtagaaagcgtgggtcctgagttttatggagatggtagcttgccttttccactgttggagacccttgaatttgaggacatgaaacattggaaggagtggtttccgtgggaacaagtaaaagggaagggagttttcccttgcttaacaatgctatctatctcaagatgccccaatttagagggtaggttacccacaaaccttgtttatctatccaaccttgtgattcgtgaatgcatgcagctggtggtttcgatttccaattataaacaactatgtcaactaaacattgacaattgcaaggcagtggtgcacagaagttcagttgagttcaagttactcaaggttgtaaagcttgctagtatttcagagtttagactccaaatagaggaattcatgagaggattgacaagtgttacgtatttacagattactggttgcgaggagctggcatcttcatggcaaagtgaggatagagtactccaacacttgatgtcacttcatgagctcagaatatataaatgccaaagtctagtatcttttccagaaggtagtctgccatcttctcttaaatatatatggattcagcagtgccattcccttacatcttttgcaagatatcagataccgtcaagtgtaacaagaatagagattcgattgtgcaaaaaattgaaatcattgctaggggagaagggtgaggcttcattaccttcttcttcatctccttgtttgatgcaagacgaatcctttcttgagtacttgaccattactggttgtccatccctcacatccttgtcattcaatggccatgtaccaagggctctcaaacaccttcaaattcatcgaagtgaccaactagagtcgataacagaaagcttctacgagaacaattgtctcgaactttttgatatcttccgttgctcaagtcttaaatccttaccggaggggatatgccacctcaccaatcttcgtttatttgagatttgggactgtaaaagtcttgtttccttcacgagaggagggtcgccaacaggagcctccaatctaaactctcttaagatactcaggattggtcattgtgaaggtcttgtgccttttctacgagagggggggtttactgccaacgtaacatcaattgatatagcaggtttcgatatttttcaactcttcagttgggggctgcatcacttaacctctcttagacagttgaggatccaaggtgctacagatgtggtctcttttccacctgatgagaatcaaatactgcagctccccaaatctctcactagactcacgttcggatactttgtaaatttgatcaaactcagcaagggtcttcaattcctcacctctcttcaatctcttgaaatttgggactgtcctaagctagcattcattccagacaccggcctgcctctttcacttcagaaacttagtatcaaaagatgcccggagatagaagagaaatgcaaacaaggaagaggaagatattggccaaaaatattacgcatccctcacatacagcttggaggctcagactcagaagccaactcggatatcgatgaggacagcagctggaacacgtatataagtgaaaagttgcaagagatctctagtgcagactctccaccttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

694

Amino Acids

78.34

Weight (kDa)

6.91

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
Acc36I ACCTGC 1 cut(s) 1583
AclWI GGATC 2 cut(s) 1654, 1667
AcoI YGGCCR 2 cut(s) 1252, 1940
AcsI RAATTY 6 cut(s) 281, 518, 839, 1284, 1759, 1815
AcuI CTGAAG 3 cut(s) 468, 1600, 1856
AfaI GTAC 4 cut(s) 431, 927, 1205, 1260
AfiI CCNNNNNNNGG 3 cut(s) 401, 835, 1853
AflII CTTAAG 1 cut(s) 1502
AflIII ACRYGT 2 cut(s) 252, 2028
Alw21I GWGCWC 2 cut(s) 762, 957
Alw26I GTCTC 3 cut(s) 503, 1346, 1687
Alw44I GTGCAC 1 cut(s) 758
AlwI GGATC 2 cut(s) 1654, 1667
AlwNI CAGNNNCTG 1 cut(s) 2022
AoxI GGCC 4 cut(s) 92, 1252, 1855, 1940
ApaI GGGCCC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 758
ApeKI GCWGC 4 cut(s) 688, 1627, 1714, 2019
ApoI RAATTY 6 cut(s) 281, 518, 839, 1284, 1759, 1815
Asp700I GAANNNNTTC 1 cut(s) 1194
AspS9I GGNCC 3 cut(s) 92, 93, 464
AsuC2I CCSGG 1 cut(s) 1898
AsuHPI GGTGA 4 cut(s) 154, 1154, 1399, 1786
AsuNHI GCTAGC 1 cut(s) 1834
AvaII GGWCC 1 cut(s) 464
BaeGI GKGCMC 2 cut(s) 96, 762
BalI TGGCCA 2 cut(s) 1254, 1942
BamHI GGATCC 1 cut(s) 1659
BanII GRGCYC 3 cut(s) 96, 957, 1270
BauI CACGAG 1 cut(s) 1459
BbsI GAAGAC 1 cut(s) 1775
Bbv12I GWGCWC 2 cut(s) 762, 957
BbvI GCAGC 4 cut(s) 700, 1614, 1726, 2031
BccI CCATC 4 cut(s) 346, 476, 1015, 1234
BciVI GTATCC 1 cut(s) 1742
BclI TGATCA 2 cut(s) 288, 1764
BcnI CCSGG 1 cut(s) 1898
BcoDI GTCTC 3 cut(s) 503, 1346, 1687
BfaI CTAG 9 cut(s) 14, 209, 807, 980, 1130, 1304, 1734, 1835, 2061
BfmI CTRYAG 3 cut(s) 134, 1671, 1712
BfrI CTTAAG 1 cut(s) 1502
BfuAI ACCTGC 1 cut(s) 1583
BfuI GTATCC 1 cut(s) 1742
BglII AGATCT 1 cut(s) 2055
BisI GCNGC 4 cut(s) 689, 1628, 1715, 2020
BlsI GCNGC 4 cut(s) 690, 1629, 1716, 2021
BmcAI AGTACT 2 cut(s) 927, 1205
Bme1390I CCNGG 1 cut(s) 1898
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 92, 93, 464
BmiI GGNNCC 4 cut(s) 94, 465, 1483, 1661
BmrFI CCNGG 1 cut(s) 1898
BmsI GCATC 7 cut(s) 187, 605, 908, 1170, 1639, 1883, 1965
BmtI GCTAGC 1 cut(s) 1838
BpiI GAAGAC 1 cut(s) 1775
Bpu10I CCTNAGC 1 cut(s) 1830
BpuEI CTTGAG 4 cut(s) 595, 773, 1220, 1354
BpuMI CCSGG 1 cut(s) 1898
Bsa29I ATCGAT 1 cut(s) 2007
BsaAI YACGTR 2 cut(s) 867, 2031
BsaBI GATNNNNATC 1 cut(s) 1701
BsaI GGTCTC 2 cut(s) 503, 1687
BsaJI CCNNGG 3 cut(s) 554, 1262, 1663
BsaWI WCCGGW 1 cut(s) 1387
BsaXI ACNNNNNCTCC 2 cut(s) 1701, 1731
Bsc4I CCNNNNNNNGG 3 cut(s) 401, 835, 1853
Bse118I RCCGGY 1 cut(s) 1853
Bse1I ACTGG 4 cut(s) 184, 442, 886, 1222
Bse3DI GCAATG 1 cut(s) 1124
Bse8I GATNNNNATC 1 cut(s) 1701
BseCI ATCGAT 1 cut(s) 2007
BseDI CCNNGG 3 cut(s) 554, 1262, 1663
BseGI GGATG 3 cut(s) 1226, 1235, 1956
BseJI GATNNNNATC 1 cut(s) 1701
BseLI CCNNNNNNNGG 3 cut(s) 401, 835, 1853
BseMI GCAATG 1 cut(s) 1124
BseMII CTCAG 7 cut(s) 289, 459, 970, 1525, 1786, 1995, 2001
BseNI ACTGG 4 cut(s) 184, 442, 886, 1222
BseRI GAGGAG 2 cut(s) 905, 1479
BseSI GKGCMC 2 cut(s) 96, 762
BseXI GCAGC 4 cut(s) 700, 1614, 1726, 2031
BsgI GTGCAG 1 cut(s) 2085
BshFI GGCC 4 cut(s) 94, 1254, 1857, 1942
BshVI ATCGAT 1 cut(s) 2007
BsiHKAI GWGCWC 2 cut(s) 762, 957
BsiSI CCGG 3 cut(s) 1388, 1854, 1898
BslFI GGGAC 3 cut(s) 127, 1448, 1835
BslI CCNNNNNNNGG 3 cut(s) 401, 835, 1853
BsmAI GTCTC 3 cut(s) 503, 1346, 1687
BsmFI GGGAC 3 cut(s) 127, 1448, 1835
BsmI GAATGC 2 cut(s) 686, 1838
BsnI GGCC 4 cut(s) 94, 1254, 1857, 1942
Bso31I GGTCTC 2 cut(s) 503, 1687
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 4 cut(s) 96, 762, 957, 1270
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 4 cut(s) 288, 1659, 1764, 2055
BspANI GGCC 4 cut(s) 94, 1254, 1857, 1942
BspCNI CTCAG 7 cut(s) 288, 460, 969, 1524, 1785, 1994, 2000
BspDI ATCGAT 1 cut(s) 2007
BspHI TCATGA 4 cut(s) 265, 285, 843, 949
BspLI GGNNCC 4 cut(s) 94, 465, 1483, 1661
BspMAI CTGCAG 2 cut(s) 138, 1716
BspMI ACCTGC 1 cut(s) 1583
BspOI GCTAGC 1 cut(s) 1838
BspPI GGATC 2 cut(s) 1654, 1667
BspTI CTTAAG 1 cut(s) 1502
BspTNI GGTCTC 2 cut(s) 503, 1687
BsrDI GCAATG 1 cut(s) 1124
BsrFI RCCGGY 1 cut(s) 1853
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 4 cut(s) 184, 442, 886, 1222
BssAI RCCGGY 1 cut(s) 1853
BssECI CCNNGG 3 cut(s) 554, 1262, 1663
BssMI GATC 4 cut(s) 288, 1659, 1764, 2055
BssSI CACGAG 1 cut(s) 1459
BssT1I CCWWGG 2 cut(s) 1262, 1663
Bst2BI CACGAG 1 cut(s) 1459
Bst4CI ACNGT 7 cut(s) 42, 429, 504, 1077, 1439, 1653, 1826
Bst6I CTCTTC 4 cut(s) 1619, 1806, 1902, 1921
BstAFI CTTAAG 1 cut(s) 1502
BstAUI TGTACA 1 cut(s) 429
BstBAI YACGTR 2 cut(s) 867, 2031
BstC8I GCNNGC 7 cut(s) 6, 491, 686, 804, 897, 1836, 1859
BstDSI CCRYGG 1 cut(s) 554
BstEII GGTNACC 1 cut(s) 636
BstF5I GGATG 3 cut(s) 1226, 1235, 1956
BstKTI GATC 4 cut(s) 291, 1662, 1767, 2058
BstMAI GTCTC 3 cut(s) 503, 1346, 1687
BstMBI GATC 4 cut(s) 288, 1659, 1764, 2055
BstMWI GCNNNNNNNGC 2 cut(s) 66, 167
BstNSI RCATGY 2 cut(s) 256, 688
BstPI GGTNACC 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 1896
BstSFI CTRYAG 3 cut(s) 134, 1671, 1712
BstSLI GKGCMC 2 cut(s) 96, 762
BstSNI TACGTA 1 cut(s) 867
BstV1I GCAGC 4 cut(s) 700, 1614, 1726, 2031
BstV2I GAAGAC 1 cut(s) 1775
BstX2I RGATCY 2 cut(s) 1659, 2055
BstYI RGATCY 2 cut(s) 1659, 2055
Bsu15I ATCGAT 1 cut(s) 2007
BsuI GTATCC 1 cut(s) 1742
BsuRI GGCC 4 cut(s) 94, 1254, 1857, 1942
BsuTUI ATCGAT 1 cut(s) 2007
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 3 cut(s) 1226, 1235, 1956
BtsI GCAGTG 2 cut(s) 759, 1043
BtsIMutI CAGTG 4 cut(s) 38, 500, 759, 1043
BveI ACCTGC 1 cut(s) 1583
Cac8I GCNNGC 7 cut(s) 6, 491, 686, 804, 897, 1836, 1859
CaiI CAGNNNCTG 1 cut(s) 2022
CciI TCATGA 4 cut(s) 265, 285, 843, 949
Cfr10I RCCGGY 1 cut(s) 1853
Cfr13I GGNCC 3 cut(s) 92, 93, 464
ClaI ATCGAT 1 cut(s) 2007
Csp6I GTAC 4 cut(s) 430, 926, 1204, 1259
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 9 cut(s) 253, 266, 286, 529, 685, 844, 906, 950, 1256
CviQI GTAC 4 cut(s) 430, 926, 1204, 1259
DpnI GATC 4 cut(s) 290, 1661, 1766, 2057
DpnII GATC 4 cut(s) 288, 1659, 1764, 2055
EaeI YGGCCR 2 cut(s) 1252, 1940
Eam1104I CTCTTC 4 cut(s) 1619, 1806, 1902, 1921
EarI CTCTTC 4 cut(s) 1619, 1806, 1902, 1921
Ecl136II GAGCTC 1 cut(s) 955
Eco105I TACGTA 1 cut(s) 867
Eco130I CCWWGG 2 cut(s) 1262, 1663
Eco24I GRGCYC 3 cut(s) 96, 957, 1270
Eco31I GGTCTC 2 cut(s) 503, 1687
Eco32I GATATC 4 cut(s) 332, 1067, 1357, 2005
Eco47I GGWCC 1 cut(s) 464
Eco53kI GAGCTC 1 cut(s) 955
Eco57I CTGAAG 3 cut(s) 468, 1600, 1856
Eco91I GGTNACC 1 cut(s) 636
EcoICRI GAGCTC 1 cut(s) 955
EcoO109I RGGNCCY 3 cut(s) 92, 93, 464
EcoO65I GGTNACC 1 cut(s) 636
EcoRI GAATTC 1 cut(s) 839
EcoRV GATATC 4 cut(s) 332, 1067, 1357, 2005
EcoT14I CCWWGG 2 cut(s) 1262, 1663
EcoT22I ATGCAT 2 cut(s) 202, 686
EcoT38I GRGCYC 3 cut(s) 96, 957, 1270
ErhI CCWWGG 2 cut(s) 1262, 1663
FaeI CATG 9 cut(s) 256, 269, 289, 532, 688, 847, 909, 953, 1259
FaqI GGGAC 3 cut(s) 127, 1448, 1835
FatI CATG 9 cut(s) 252, 265, 285, 528, 684, 843, 905, 949, 1255
FbaI TGATCA 2 cut(s) 288, 1764
Fnu4HI GCNGC 4 cut(s) 689, 1628, 1715, 2020
FokI GGATG 3 cut(s) 1213, 1222, 1943
FriOI GRGCYC 3 cut(s) 96, 957, 1270
Fsp4HI GCNGC 4 cut(s) 689, 1628, 1715, 2020
FspBI CTAG 9 cut(s) 14, 209, 807, 980, 1130, 1304, 1734, 1835, 2061
GluI GCNGC 4 cut(s) 689, 1628, 1715, 2020
HaeIII GGCC 4 cut(s) 94, 1254, 1857, 1942
HapII CCGG 3 cut(s) 1388, 1854, 1898
Hin1II CATG 9 cut(s) 256, 269, 289, 532, 688, 847, 909, 953, 1259
HincII GTYRAC 2 cut(s) 24, 728
HindII GTYRAC 2 cut(s) 24, 728
HindIII AAGCTT 2 cut(s) 800, 1321
HpaII CCGG 3 cut(s) 1388, 1854, 1898
HphI GGTGA 4 cut(s) 154, 1154, 1399, 1786
Hpy166II GTNNAC 4 cut(s) 24, 728, 760, 1563
Hpy8I GTNNAC 4 cut(s) 24, 728, 760, 1563
HpyCH4III ACNGT 7 cut(s) 42, 429, 504, 1077, 1439, 1653, 1826
HpyCH4IV ACGT 5 cut(s) 311, 866, 1572, 1742, 2030
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 167
HpySE526I ACGT 5 cut(s) 311, 866, 1572, 1742, 2030
Hsp92II CATG 9 cut(s) 256, 269, 289, 532, 688, 847, 909, 953, 1259
Ksp22I TGATCA 2 cut(s) 288, 1764
Kzo9I GATC 4 cut(s) 288, 1659, 1764, 2055
LmnI GCTCC 3 cut(s) 892, 1481, 1722
Lsp1109I GCAGC 4 cut(s) 700, 1614, 1726, 2031
LweI GCATC 7 cut(s) 187, 605, 908, 1170, 1639, 1883, 1965
MaeI CTAG 9 cut(s) 14, 209, 807, 980, 1130, 1304, 1734, 1835, 2061
MaeII ACGT 5 cut(s) 311, 866, 1572, 1742, 2030
MaeIII GTNAC 7 cut(s) 636, 783, 862, 942, 1084, 1295, 1573
MalI GATC 4 cut(s) 290, 1661, 1766, 2057
MboI GATC 4 cut(s) 288, 1659, 1764, 2055
MfeI CAATTG 3 cut(s) 742, 1336, 1581
MflI RGATCY 2 cut(s) 1659, 2055
MhlI GDGCHC 4 cut(s) 96, 762, 957, 1270
MlsI TGGCCA 2 cut(s) 1254, 1942
MluNI TGGCCA 2 cut(s) 1254, 1942
MlyI GAGTC 6 cut(s) 80, 819, 1316, 1731, 1979, 2063
MmeI TCCRAC 3 cut(s) 486, 687, 955
Mox20I TGGCCA 2 cut(s) 1254, 1942
Mph1103I ATGCAT 2 cut(s) 202, 686
MroXI GAANNNNTTC 1 cut(s) 1194
MscI TGGCCA 2 cut(s) 1254, 1942
MseI TTAA 7 cut(s) 176, 257, 593, 1017, 1377, 1503, 1637
MslI CAYNNNNRTG 2 cut(s) 904, 1293
Msp20I TGGCCA 2 cut(s) 1254, 1942
MspA1I CMGCKG 2 cut(s) 691, 2022
MspCI CTTAAG 1 cut(s) 1502
MspI CCGG 3 cut(s) 1388, 1854, 1898
MspR9I CCNGG 1 cut(s) 1898
MunI CAATTG 3 cut(s) 742, 1336, 1581
Mva1269I GAATGC 2 cut(s) 686, 1838
MwoI GCNNNNNNNGC 2 cut(s) 66, 167
NciI CCSGG 1 cut(s) 1898
NdeII GATC 4 cut(s) 288, 1659, 1764, 2055
NheI GCTAGC 1 cut(s) 1834
NlaIII CATG 9 cut(s) 256, 269, 289, 532, 688, 847, 909, 953, 1259
NlaIV GGNNCC 4 cut(s) 94, 465, 1483, 1661
NmuCI GTSAC 2 cut(s) 942, 1295
NsiI ATGCAT 2 cut(s) 202, 686
NspI RCATGY 2 cut(s) 256, 688
PaeI GCATGC 1 cut(s) 688
PagI TCATGA 4 cut(s) 265, 285, 843, 949
PciI ACATGT 1 cut(s) 252
PctI GAATGC 2 cut(s) 686, 1838
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 6 cut(s) 103, 673, 1030, 1099, 1190, 1702
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 4 cut(s) 690, 1629, 1716, 2021
PleI GAGTC 6 cut(s) 79, 819, 1315, 1731, 1979, 2063
PpsI GAGTC 6 cut(s) 79, 819, 1315, 1731, 1979, 2063
Ppu21I YACGTR 2 cut(s) 867, 2031
PpuMI RGGWCCY 1 cut(s) 464
PscI ACATGT 1 cut(s) 252
PsiI TTATAA 1 cut(s) 714
Psp124BI GAGCTC 1 cut(s) 957
Psp5II RGGWCCY 1 cut(s) 464
PspEI GGTNACC 1 cut(s) 636
PspN4I GGNNCC 4 cut(s) 94, 465, 1483, 1661
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 3 cut(s) 92, 93, 464
PspPPI RGGWCCY 1 cut(s) 464
PstI CTGCAG 2 cut(s) 138, 1716
PstNI CAGNNNCTG 1 cut(s) 2022
PsuI RGATCY 2 cut(s) 1659, 2055
PsyI GACNNNGTC 1 cut(s) 118
PvuII CAGCTG 2 cut(s) 691, 2022
RsaI GTAC 4 cut(s) 431, 927, 1205, 1260
RsaNI GTAC 4 cut(s) 430, 926, 1204, 1259
RseI CAYNNNNRTG 2 cut(s) 904, 1293
SacI GAGCTC 1 cut(s) 957
SaqAI TTAA 7 cut(s) 176, 257, 593, 1017, 1377, 1503, 1637
SatI GCNGC 4 cut(s) 689, 1628, 1715, 2020
Sau3AI GATC 4 cut(s) 288, 1659, 1764, 2055
Sau96I GGNCC 3 cut(s) 92, 93, 464
ScaI AGTACT 2 cut(s) 927, 1205
SchI GAGTC 6 cut(s) 80, 819, 1316, 1731, 1979, 2063
ScrFI CCNGG 1 cut(s) 1898
SduI GDGCHC 4 cut(s) 96, 762, 957, 1270
SfaNI GCATC 7 cut(s) 187, 605, 908, 1170, 1639, 1883, 1965
SfcI CTRYAG 3 cut(s) 134, 1671, 1712
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 2 cut(s) 904, 1293
SmlI CTYRAG 5 cut(s) 610, 788, 1199, 1369, 1502
SmoI CTYRAG 5 cut(s) 610, 788, 1199, 1369, 1502
SnaBI TACGTA 1 cut(s) 867
SphI GCATGC 1 cut(s) 688
SspI AATATT 1 cut(s) 1950
SspMI CTAG 9 cut(s) 14, 209, 807, 980, 1130, 1304, 1734, 1835, 2061
SstI GAGCTC 1 cut(s) 957
StyD4I CCNGG 1 cut(s) 1896
StyI CCWWGG 2 cut(s) 1262, 1663
TaaI ACNGT 7 cut(s) 42, 429, 504, 1077, 1439, 1653, 1826
TaiI ACGT 5 cut(s) 314, 869, 1575, 1745, 2033
TaqI TCGA 8 cut(s) 109, 701, 1102, 1291, 1310, 1344, 1599, 2007
TatI WGTACW 3 cut(s) 429, 925, 1203
TfiI GAWTC 6 cut(s) 103, 673, 1030, 1099, 1190, 1702
Tru1I TTAA 7 cut(s) 176, 257, 593, 1017, 1377, 1503, 1637
Tru9I TTAA 7 cut(s) 176, 257, 593, 1017, 1377, 1503, 1637
TscAI CASTG 4 cut(s) 45, 507, 759, 1043
TseFI GTSAC 2 cut(s) 942, 1295
TseI GCWGC 4 cut(s) 688, 1627, 1714, 2019
Tsp45I GTSAC 2 cut(s) 942, 1295
TspGWI ACGGA 2 cut(s) 543, 1352
TspRI CASTG 4 cut(s) 45, 507, 759, 1043
Tth111I GACNNNGTC 1 cut(s) 118
Vha464I CTTAAG 1 cut(s) 1502
VneI GTGCAC 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 6 cut(s) 281, 518, 839, 1284, 1759, 1815
XceI RCATGY 2 cut(s) 256, 688
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 9 cut(s) 14, 209, 807, 980, 1130, 1304, 1734, 1835, 2061
ZrmI AGTACT 2 cut(s) 927, 1205
Zsp2I ATGCAT 2 cut(s) 202, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.