pycom11g02380

disease resistance

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
2035761 .. 2036267
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g02380.1

Sequence Viewer

Length: 507 bp
ATGCCTCCAAAACTAGGTAGATTGGTGAATCTCCAATCTTTGCCTAATTTTGTGGTCAGTGGTAGAACTGATCAATCAGGAATAAGAGAGATAGGGCCTCTATCGCATCTCCGAGGGGCATTGTGCATCTCAAGATTGGAGAATGTGACTGATGTCGAGGATGCTCAGAGGGCCAACTTAAAATACAAGGTGAAGCTTGATTCGTTGGTCCTAAAATGGTCTCATCCAAGGGACACAAGAGAAATGGAATCTGATGTGCTTGACATGTTAGAGCCTCATAGAAAGATCAAGGAGCTCACCATCCAGAGTTATGCCGGAAAGGAATTTTCATCATGGGTTGGAGGTCATTTGTTCTCTAATATGGTGCCTGTGCGCTTAGAGGAATGTAACAATTGTTTGTCGTTGCCACCTCTCGGACAATTGACTCAACTCAAAGAACTTTATATTAGAGGAATGAATGGTGTTTTCCCTTACCTGAAAACGCTCTTAGTAAAAAAAATGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

169

Amino Acids

19.12

Weight (kDa)

9.19

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 28 - 152 6.3e-38 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 364
AcsI RAATTY 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 14, 413
AflIII ACRYGT 1 cut(s) 264
AluBI AGCT 2 cut(s) 196, 295
AluI AGCT 2 cut(s) 196, 295
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 2 cut(s) 95, 171
ApoI RAATTY 1 cut(s) 323
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 3 cut(s) 95, 171, 208
AsuHPI GGTGA 3 cut(s) 37, 202, 289
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 1 cut(s) 308
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 3 cut(s) 95, 171, 208
BmiI GGNNCC 1 cut(s) 366
BmsI GCATC 3 cut(s) 115, 135, 151
BoxI GACNNNNGTC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 112, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 413
BseDI CCNNGG 2 cut(s) 112, 227
BseGI GGATG 3 cut(s) 166, 223, 300
BseLI CCNNNNNNNGG 2 cut(s) 14, 413
BseMII CTCAG 1 cut(s) 179
BshFI GGCC 2 cut(s) 97, 173
BshNI GGYRCC 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 14, 413
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 2 cut(s) 97, 173
Bso31I GGTCTC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 70, 285
BspANI GGCC 2 cut(s) 97, 173
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 366
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 112, 227
BssMI GATC 2 cut(s) 70, 285
BssT1I CCWWGG 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 165, 376, 487
BstF5I GGATG 3 cut(s) 166, 223, 300
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 2 cut(s) 73, 288
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 70, 285
BstMWI GCNNNNNNNGC 2 cut(s) 103, 170
BstNSI RCATGY 1 cut(s) 268
BstPAI GACNNNNGTC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 97, 173
BtsCI GGATG 3 cut(s) 166, 223, 300
BtsIMutI CAGTG 1 cut(s) 64
CfoI GCGC 1 cut(s) 375
Cfr13I GGNCC 3 cut(s) 95, 171, 208
CviAII CATG 2 cut(s) 265, 333
CviJI RGCY 5 cut(s) 97, 173, 196, 274, 295
CviKI_1 RGCY 5 cut(s) 97, 173, 196, 274, 295
DdeI CTNAG 3 cut(s) 165, 376, 487
DpnI GATC 2 cut(s) 72, 287
DpnII GATC 2 cut(s) 70, 285
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 2 cut(s) 268, 336
FaiI YATR 6 cut(s) 266, 279, 312, 334, 362, 444
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 264, 332
FbaI TGATCA 1 cut(s) 70
FokI GGATG 3 cut(s) 173, 210, 287
FriOI GRGCYC 1 cut(s) 297
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 374
HaeIII GGCC 2 cut(s) 97, 173
HapII CCGG 1 cut(s) 315
HhaI GCGC 1 cut(s) 375
Hin1II CATG 2 cut(s) 268, 336
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 4 cut(s) 28, 200, 248, 424
HpaII CCGG 1 cut(s) 315
HphI GGTGA 3 cut(s) 37, 202, 289
Hpy188I TCNGA 4 cut(s) 113, 168, 253, 416
Hpy188III TCNNGA 3 cut(s) 78, 132, 304
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 170
HpyF3I CTNAG 3 cut(s) 165, 376, 487
Hsp92II CATG 2 cut(s) 268, 336
HspAI GCGC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 70, 285
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 5 cut(s) 63, 317, 328, 381, 488
LweI GCATC 3 cut(s) 115, 135, 151
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 145, 386
MalI GATC 2 cut(s) 72, 287
MboI GATC 2 cut(s) 70, 285
MfeI CAATTG 2 cut(s) 391, 419
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 4 cut(s) 46, 323, 391, 419
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 319
MseI TTAA 1 cut(s) 179
MspI CCGG 1 cut(s) 315
MunI CAATTG 2 cut(s) 391, 419
MwoI GCNNNNNNNGC 2 cut(s) 103, 170
NdeII GATC 2 cut(s) 70, 285
NlaIII CATG 2 cut(s) 268, 336
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 268
PciI ACATGT 1 cut(s) 264
PfeI GAWTC 3 cut(s) 28, 200, 248
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PscI ACATGT 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 3 cut(s) 95, 171, 208
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 2 cut(s) 70, 285
Sau96I GGNCC 3 cut(s) 95, 171, 208
SchI GAGTC 1 cut(s) 418
SduI GDGCHC 1 cut(s) 297
SetI ASST 7 cut(s) 19, 192, 198, 297, 346, 412, 477
SfaNI GCATC 3 cut(s) 115, 135, 151
SinI GGWCC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 4 cut(s) 46, 323, 391, 419
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 297
StyI CCWWGG 1 cut(s) 227
TaqI TCGA 1 cut(s) 156
TasI AATT 4 cut(s) 46, 323, 391, 419
TfiI GAWTC 3 cut(s) 28, 200, 248
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 318, 470
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 323
XceI RCATGY 1 cut(s) 268
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.