RchiOBHm_Chr1g0319911

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000070
Physical Location & Seq
Reverse (-)
7566310 .. 7568550
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55011

Sequence Viewer

Length: 2241 bp
ATGGCAGTGGGAGAGATCTTTCTTGCGGCATTCCTTCAGGTGCTGCTGGACAGGTTAACGCCTCGGGAGTTCCCAGGCTACTTTGGAAGCTTGGGAGGAGTTCGCAAAAAGCTGCAGAAATGGAGAGGAACACTGTCCGCAATTGCAGCGGTTCTTTCAGATGCGGAGGAGAAGCAGCTGACGAACATGGCAGTGGATCTGTGGCTGAATGACCTCAGACACTTGGCTTATGATATCGACGATCTACTCAACACCTTTTCTAATGAGATGTTGGAACGCAAGCAGCTCAAGGTTAACCAAACTGGCACAAGCAAGGTACGAGGCTTCTTTACCAAAGTTCCTCATAAAGTCAAGTTCAATTTCAATATGAACTCCCAGATAGACGACATTGCTAACCGCTTGCAAGACATATTTGACCGGAAAGAGAAACTCGGTTTGAAATATATTGAGCATACCTCTACTTCAACATCCTCATCGCAAAGGACACCAAGTTCGTATGTGTTGGATGGACCTGTGGTTGGGAGAGATGAAGACGCACGAAATATTGTGGAATTGTTGTCCAGAGATGCTGATCCTTCTTCTTCCACAAATTATAAAGTTGTTGCCATTGTTGGTATGGGAGGAGTCGGCAAGACAACGATTGTGGCACAAGTCTTCAATGATGTAGCTGCGGTGGAACAGTTTGATCTCAAGATCTGGGTTTCAGTATCCGATAACTTTGATCTTCAAACGGTGACGAGAACTATTTTTAAGGAAGTCACATCTCGGCCATGTGATGTGGATGAGTTCAGTCGACTTCAAGATAATCTGAGCAAGGAGATCGATGGTAAAAGGTTTTTGATTGTTTTAGATGATATCTGGAGCACATGTGATTATGATTCATGGAAAAAATTGCAAGCTCCCTTTCGTAGGGGAGCTAAGGGAAGCAAGGTAATGGTGATAACACGTGAGGAAAAAGTTGCTGCATTGATGGGAGCCCCAGCCGCTGAAGTTTATTATTTAAAGACTCTATCAGATGAAGGTTGTTTACAAGTATTTGAGCAGCATGTTAGCAATGACAGGCCACCAAATTTCGAGTTGCTTGAGAAGAAAATTGTTACGAACTGCAATGGATTGCCATTGGCTGCAAAAACTCTTGGTGGTGTTTTACGTTGTAAAGAAACTGACCAGTGGGAGGAAATACTGAATGAAAAATTATGGAGTACATCAGATGGGAGTAAAATACTCCCAGTACTGAGATTGAGTTATCATTATCTCCCTTCAACTTTGAAGAGGTGCTTTGCCTATTGCTCAATACTTCCAAATGACTATGAATTTGGGAAAACCCAATTTATCCTTCTGTGGATGGCAGAGGGTCTCCTTGAGCAACAAGAAGGGACTAAAGCAATGGAAGATATCGATGAAGAATATTTTGCGGAGCTACTGTCTCGGTCATTATTTCAAAACTCGGGCAGAAACAGTTCATGCTATGTAATGCATGACCTTGTTGGTGATTTGGCACGATGGGCTGCTGGAGACACATTTTGCAGATTGGAGGATAAACCGCATGGTAGATGTTCCGCAAAGACTCGTAATCTGACTTACATTTCTGGTAAGTTCGATGGGGTAAAAAGATTTGGGACATTTTCTGAAGCAAAACGGTTGCGAACTTTCCTACCACTTTCAGTTTCCAATGGTTATGAGAATTATCTAACTCGTTATGCTACTTTTGATTTATTGCCACAATTGAAGTACTTGCGGGTGCTCTCCTTCAATGGCTATAAACTGACCGAGCTGCCAGATTCCGTAGGTAAGTTGAGACATCTACGGTACCTTGATCTTTCTCACACATTAATAAAGAGTTTGCCTGAGTCAACATGCATGCTTTACAACTTACAGACGTTAATTCTAGAGAATTGTTCAAAATTGAAGACACTACCTTCAAACATGAGCAATTTATCTAATTTACGTCATCTCAATAATTCAAACACGCCTTCATTGGAAGAAATGCCTCCCCAAGTAAGTCGGTTGACTCATCTGCGAACTTTGCCTAATTTTGTGGTGGGGAAATGTAGTGCATCAGGGATTGGAGAGATACAGTCATTGCATCTTTGTGGGACCTTGAGGATTGGAAAATTGGAAAATGTGATTGATGTTGGGGATGCGAAGAGGGCCCAAATAATGAACAAGGAAGGGCTAACTACCTTGCAATTGGAATGGAGTGGCACAAGTAAGAAGGAGTCGCAGTTTAGAACCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

746

Amino Acids

84.28

Weight (kDa)

8.04

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 8 - 99 1e-20 Rx N-terminal domain
NB-ARC PF00931 182 - 352 1.2e-36 NB-ARC domain
WHD_DRP PF23559 432 - 500 3.3e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 573 - 697 9.9e-18 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 689 - 740 5.3e-08 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
Acc65I GGTACC 1 cut(s) 1809
AccB1I GGYRCC 1 cut(s) 1809
AccI GTMKAC 1 cut(s) 793
AclWI GGATC 2 cut(s) 204, 566
AcoI YGGCCR 1 cut(s) 767
AcsI RAATTY 2 cut(s) 1069, 1313
AcuI CTGAAG 3 cut(s) 20, 1008, 1650
AcvI CACGTG 1 cut(s) 947
AfaI GTAC 5 cut(s) 318, 1204, 1233, 1733, 1811
AfiI CCNNNNNNNGG 3 cut(s) 518, 909, 1174
AflIII ACRYGT 2 cut(s) 866, 944
AjnI CCWGG 1 cut(s) 73
AjuI GAANNNNNNNTTGG 2 cut(s) 1320, 1352
AloI GAACNNNNNNTCC 2 cut(s) 475, 507
AluBI AGCT 9 cut(s) 90, 112, 178, 286, 668, 899, 917, 1420, 1774
AluI AGCT 9 cut(s) 90, 112, 178, 286, 668, 899, 917, 1420, 1774
Alw21I GWGCWC 2 cut(s) 866, 1746
Alw26I GTCTC 4 cut(s) 1361, 1431, 1509, 1792
AlwI GGATC 2 cut(s) 204, 566
AlwNI CAGNNNCTG 2 cut(s) 43, 986
Ama87I CYCGRG 2 cut(s) 63, 1447
AoxI GGCC 3 cut(s) 767, 1061, 2151
ApaI GGGCCC 1 cut(s) 2155
ApoI RAATTY 2 cut(s) 1069, 1313
ArsI GACNNNNNNTTYG 4 cut(s) 475, 507, 1298, 1330
AseI ATTAAT 1 cut(s) 1832
Asp700I GAANNNNTTC 1 cut(s) 1459
Asp718I GGTACC 1 cut(s) 1809
AspS9I GGNCC 4 cut(s) 509, 2097, 2151, 2152
AsuHPI GGTGA 3 cut(s) 745, 949, 1502
AvaI CYCGRG 2 cut(s) 63, 1447
AvaII GGWCC 2 cut(s) 509, 2097
BaeGI GKGCMC 1 cut(s) 2155
BanI GGYRCC 1 cut(s) 1809
BanII GRGCYC 2 cut(s) 979, 2155
BarI GAAGNNNNNNTAC 2 cut(s) 1011, 1043
BbrPI CACGTG 1 cut(s) 947
BbsI GAAGAC 3 cut(s) 537, 646, 1916
Bbv12I GWGCWC 2 cut(s) 866, 1746
BccI CCATC 7 cut(s) 500, 818, 964, 1205, 1339, 1497, 1595
BcgI CGANNNNNNTGC 2 cut(s) 802, 836
BciT130I CCWGG 1 cut(s) 75
BciVI GTATCC 1 cut(s) 718
BcoDI GTCTC 4 cut(s) 1361, 1431, 1509, 1792
BfaI CTAG 1 cut(s) 1889
BfmI CTRYAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 718
BglII AGATCT 2 cut(s) 15, 693
BmcAI AGTACT 2 cut(s) 1233, 1733
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 2 cut(s) 509, 2097
BmeT110I CYCGRG 2 cut(s) 63, 1447
BmgT120I GGNCC 4 cut(s) 509, 2097, 2151, 2152
BmiI GGNNCC 4 cut(s) 976, 1811, 2098, 2153
BmrFI CCNGG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 1223
BmsI GCATC 5 cut(s) 151, 556, 2066, 2095, 2131
BmuI ACTGGG 1 cut(s) 1223
BpiI GAAGAC 3 cut(s) 537, 646, 1916
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 2 cut(s) 880, 1533
Bpu10I CCTNAGC 1 cut(s) 918
BpuEI CTTGAG 5 cut(s) 272, 674, 1103, 1382, 2122
Bsa29I ATCGAT 2 cut(s) 822, 1398
BsaAI YACGTR 1 cut(s) 947
BsaBI GATNNNNATC 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 1361
BsaJI CCNNGG 2 cut(s) 62, 73
BsaWI WCCGGW 1 cut(s) 417
BsaXI ACNNNNNCTCC 6 cut(s) 853, 883, 1409, 1439, 2210, 2240
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 909, 1174
Bse1I ACTGG 3 cut(s) 307, 1168, 1229
Bse3DI GCAATG 5 cut(s) 387, 1060, 1114, 1392, 2081
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 2 cut(s) 822, 1398
BseDI CCNNGG 2 cut(s) 62, 73
BseGI GGATG 5 cut(s) 467, 511, 787, 1350, 2146
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 3 cut(s) 518, 909, 1174
BseMI GCAATG 5 cut(s) 387, 1060, 1114, 1392, 2081
BseMII CTCAG 4 cut(s) 229, 800, 1226, 1839
BseNI ACTGG 3 cut(s) 307, 1168, 1229
BseRI GAGGAG 3 cut(s) 111, 182, 636
BseSI GKGCMC 1 cut(s) 2155
BseYI CCCAGC 1 cut(s) 979
BshFI GGCC 3 cut(s) 769, 1063, 2153
BshNI GGYRCC 1 cut(s) 1809
BshVI ATCGAT 2 cut(s) 822, 1398
BsiHKAI GWGCWC 2 cut(s) 866, 1746
BsiHKCI CYCGRG 2 cut(s) 63, 1447
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 3 cut(s) 1390, 1633, 2110
BslI CCNNNNNNNGG 3 cut(s) 518, 909, 1174
BsmAI GTCTC 4 cut(s) 1361, 1431, 1509, 1792
BsmFI GGGAC 3 cut(s) 1390, 1633, 2110
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 3 cut(s) 769, 1063, 2153
Bso31I GGTCTC 1 cut(s) 1361
BsoBI CYCGRG 2 cut(s) 63, 1447
Bsp120I GGGCCC 1 cut(s) 2151
Bsp1286I GDGCHC 4 cut(s) 866, 979, 1746, 2155
Bsp143I GATC 9 cut(s) 15, 196, 241, 571, 685, 693, 721, 819, 1816
BspANI GGCC 3 cut(s) 769, 1063, 2153
BspCNI CTCAG 4 cut(s) 228, 801, 1227, 1840
BspDI ATCGAT 2 cut(s) 822, 1398
BspLI GGNNCC 4 cut(s) 976, 1811, 2098, 2153
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 2 cut(s) 204, 566
BspT107I GGYRCC 1 cut(s) 1809
BspTNI GGTCTC 1 cut(s) 1361
BsrDI GCAATG 5 cut(s) 387, 1060, 1114, 1392, 2081
BsrI ACTGG 3 cut(s) 307, 1168, 1229
BssECI CCNNGG 2 cut(s) 62, 73
BssMI GATC 9 cut(s) 15, 196, 241, 571, 685, 693, 721, 819, 1816
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 8 cut(s) 135, 681, 733, 1425, 1460, 1641, 1809, 2079
Bst6I CTCTTC 2 cut(s) 1265, 2141
BstBAI YACGTR 1 cut(s) 947
BstC8I GCNNGC 4 cut(s) 281, 401, 897, 1862
BstDEI CTNAG 5 cut(s) 215, 809, 918, 1235, 1848
BstENI CCTNNNNNAGG 1 cut(s) 907
BstF5I GGATG 5 cut(s) 467, 511, 787, 1350, 2146
BstKTI GATC 9 cut(s) 18, 199, 244, 574, 688, 696, 724, 822, 1819
BstMAI GTCTC 4 cut(s) 1361, 1431, 1509, 1792
BstMBI GATC 9 cut(s) 15, 196, 241, 571, 685, 693, 721, 819, 1816
BstMWI GCNNNNNNNGC 5 cut(s) 146, 983, 1505, 2026, 2150
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 4 cut(s) 870, 1049, 1860, 1864
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 113
BstSLI GKGCMC 1 cut(s) 2155
BstV2I GAAGAC 3 cut(s) 537, 646, 1916
BstX2I RGATCY 3 cut(s) 15, 196, 693
BstYI RGATCY 3 cut(s) 15, 196, 693
Bsu15I ATCGAT 2 cut(s) 822, 1398
BsuI GTATCC 1 cut(s) 718
BsuRI GGCC 3 cut(s) 769, 1063, 2153
BsuTUI ATCGAT 2 cut(s) 822, 1398
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 5 cut(s) 467, 511, 787, 1350, 2146
BtsI GCAGTG 2 cut(s) 12, 198
BtsIMutI CAGTG 4 cut(s) 12, 131, 198, 1175
Cac8I GCNNGC 4 cut(s) 281, 401, 897, 1862
CaiI CAGNNNCTG 2 cut(s) 43, 986
Cfr13I GGNCC 4 cut(s) 509, 2097, 2151, 2152
ClaI ATCGAT 2 cut(s) 822, 1398
CseI GACGC 1 cut(s) 542
Csp6I GTAC 5 cut(s) 317, 1203, 1232, 1732, 1810
CspCI CAANNNNNGTGG 2 cut(s) 624, 659
CviQI GTAC 5 cut(s) 317, 1203, 1232, 1732, 1810
DdeI CTNAG 5 cut(s) 215, 809, 918, 1235, 1848
DpnI GATC 9 cut(s) 17, 198, 243, 573, 687, 695, 723, 821, 1818
DpnII GATC 9 cut(s) 15, 196, 241, 571, 685, 693, 721, 819, 1816
DraI TTTAAA 1 cut(s) 1002
EaeI YGGCCR 1 cut(s) 767
Eam1104I CTCTTC 2 cut(s) 1265, 2141
EarI CTCTTC 2 cut(s) 1265, 2141
Eco24I GRGCYC 2 cut(s) 979, 2155
Eco31I GGTCTC 1 cut(s) 1361
Eco32I GATATC 3 cut(s) 235, 856, 1396
Eco47I GGWCC 2 cut(s) 509, 2097
Eco57I CTGAAG 3 cut(s) 20, 1008, 1650
Eco72I CACGTG 1 cut(s) 947
Eco88I CYCGRG 2 cut(s) 63, 1447
EcoNI CCTNNNNNAGG 1 cut(s) 907
EcoO109I RGGNCCY 2 cut(s) 2097, 2151
EcoRII CCWGG 1 cut(s) 73
EcoRV GATATC 3 cut(s) 235, 856, 1396
EcoT22I ATGCAT 2 cut(s) 1479, 1862
EcoT38I GRGCYC 2 cut(s) 979, 2155
FalI AAGNNNNNCTT 2 cut(s) 1262, 1294
FaqI GGGAC 3 cut(s) 1390, 1633, 2110
FauI CCCGC 1 cut(s) 1731
FblI GTMKAC 1 cut(s) 793
FokI GGATG 5 cut(s) 454, 518, 794, 1357, 2153
FriOI GRGCYC 2 cut(s) 979, 2155
FspBI CTAG 1 cut(s) 1889
GsaI CCCAGC 1 cut(s) 983
GsuI CTGGAG 2 cut(s) 880, 1533
HaeIII GGCC 3 cut(s) 769, 1063, 2153
HapII CCGG 1 cut(s) 418
HgaI GACGC 1 cut(s) 542
HincII GTYRAC 5 cut(s) 57, 295, 794, 1854, 2010
HindII GTYRAC 5 cut(s) 57, 295, 794, 1854, 2010
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 8 cut(s) 624, 878, 1006, 1567, 1781, 1850, 2011, 2219
HpaI GTTAAC 2 cut(s) 57, 295
HpaII CCGG 1 cut(s) 418
HphI GGTGA 3 cut(s) 745, 949, 1502
Hpy166II GTNNAC 6 cut(s) 57, 295, 794, 1028, 1854, 2010
Hpy188I TCNGA 8 cut(s) 160, 218, 712, 810, 1015, 1210, 1578, 1630
Hpy188III TCNNGA 6 cut(s) 65, 561, 691, 800, 859, 1889
Hpy8I GTNNAC 6 cut(s) 57, 295, 794, 1028, 1854, 2010
Hpy99I CGWCG 1 cut(s) 242
HpyCH4III ACNGT 8 cut(s) 135, 681, 733, 1425, 1460, 1641, 1809, 2079
HpyCH4IV ACGT 4 cut(s) 946, 1150, 1880, 1948
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 983, 1505, 2026, 2150
HpyF3I CTNAG 5 cut(s) 215, 809, 918, 1235, 1848
HpySE526I ACGT 4 cut(s) 946, 1150, 1880, 1948
KpnI GGTACC 1 cut(s) 1813
KspAI GTTAAC 2 cut(s) 57, 295
Kzo9I GATC 9 cut(s) 15, 196, 241, 571, 685, 693, 721, 819, 1816
LmnI GCTCC 5 cut(s) 861, 904, 914, 974, 1417
LweI GCATC 5 cut(s) 151, 556, 2066, 2095, 2131
MaeI CTAG 1 cut(s) 1889
MaeII ACGT 4 cut(s) 946, 1150, 1880, 1948
MaeIII GTNAC 3 cut(s) 733, 757, 1096
MalI GATC 9 cut(s) 17, 198, 243, 573, 687, 695, 723, 821, 1818
MboI GATC 9 cut(s) 15, 196, 241, 571, 685, 693, 721, 819, 1816
MfeI CAATTG 3 cut(s) 141, 1724, 2189
MflI RGATCY 3 cut(s) 15, 196, 693
MhlI GDGCHC 4 cut(s) 866, 979, 1746, 2155
MlyI GAGTC 6 cut(s) 633, 1000, 1561, 1859, 2005, 2228
MmeI TCCRAC 2 cut(s) 252, 483
Mph1103I ATGCAT 2 cut(s) 1479, 1862
MroXI GAANNNNTTC 1 cut(s) 1459
MseI TTAA 6 cut(s) 56, 294, 750, 1001, 1832, 1883
MslI CAYNNNNRTG 2 cut(s) 191, 2091
MspA1I CMGCKG 3 cut(s) 149, 178, 986
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 3 cut(s) 141, 1724, 2189
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 5 cut(s) 146, 983, 1505, 2026, 2150
NdeII GATC 9 cut(s) 15, 196, 241, 571, 685, 693, 721, 819, 1816
NlaIV GGNNCC 4 cut(s) 976, 1811, 2098, 2153
NmeAIII GCCGAG 1 cut(s) 745
NmuCI GTSAC 2 cut(s) 733, 757
NsiI ATGCAT 2 cut(s) 1479, 1862
NspI RCATGY 4 cut(s) 870, 1049, 1860, 1864
PaeI GCATGC 1 cut(s) 1864
PciI ACATGT 1 cut(s) 866
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 1459
PfeI GAWTC 2 cut(s) 878, 1781
PleI GAGTC 6 cut(s) 632, 1000, 1561, 1858, 2005, 2227
PmaCI CACGTG 1 cut(s) 947
PmlI CACGTG 1 cut(s) 947
PpsI GAGTC 6 cut(s) 632, 1000, 1561, 1858, 2005, 2227
Ppu21I YACGTR 1 cut(s) 947
PpuMI RGGWCCY 1 cut(s) 2097
PscI ACATGT 1 cut(s) 866
PshBI ATTAAT 1 cut(s) 1832
PsiI TTATAA 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 2097
Psp6I CCWGG 1 cut(s) 73
PspCI CACGTG 1 cut(s) 947
PspFI CCCAGC 1 cut(s) 979
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 976, 1811, 2098, 2153
PspOMI GGGCCC 1 cut(s) 2151
PspPI GGNCC 4 cut(s) 509, 2097, 2151, 2152
PspPPI RGGWCCY 1 cut(s) 2097
PstI CTGCAG 1 cut(s) 117
PstNI CAGNNNCTG 2 cut(s) 43, 986
PsuI RGATCY 3 cut(s) 15, 196, 693
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 5 cut(s) 318, 1204, 1233, 1733, 1811
RsaNI GTAC 5 cut(s) 317, 1203, 1232, 1732, 1810
RseI CAYNNNNRTG 2 cut(s) 191, 2091
SalI GTCGAC 1 cut(s) 792
SaqAI TTAA 6 cut(s) 56, 294, 750, 1001, 1832, 1883
Sau3AI GATC 9 cut(s) 15, 196, 241, 571, 685, 693, 721, 819, 1816
Sau96I GGNCC 4 cut(s) 509, 2097, 2151, 2152
ScaI AGTACT 2 cut(s) 1233, 1733
SchI GAGTC 6 cut(s) 633, 1000, 1561, 1859, 2005, 2228
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 4 cut(s) 866, 979, 1746, 2155
SfaNI GCATC 5 cut(s) 151, 556, 2066, 2095, 2131
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 2 cut(s) 509, 2097
SmiMI CAYNNNNRTG 2 cut(s) 191, 2091
SmlI CTYRAG 5 cut(s) 287, 689, 1082, 1361, 2101
SmoI CTYRAG 5 cut(s) 287, 689, 1082, 1361, 2101
SphI GCATGC 1 cut(s) 1864
SspI AATATT 2 cut(s) 544, 1409
SspMI CTAG 1 cut(s) 1889
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 8 cut(s) 135, 681, 733, 1425, 1460, 1641, 1809, 2079
TaiI ACGT 4 cut(s) 949, 1153, 1883, 1951
TaqI TCGA 6 cut(s) 237, 793, 822, 1074, 1398, 1599
TaqII GACCGA 2 cut(s) 1419, 1784
TatI WGTACW 3 cut(s) 1202, 1231, 1731
TauI GCSGC 2 cut(s) 29, 986
TfiI GAWTC 2 cut(s) 878, 1781
Tru1I TTAA 6 cut(s) 56, 294, 750, 1001, 1832, 1883
Tru9I TTAA 6 cut(s) 56, 294, 750, 1001, 1832, 1883
TscAI CASTG 4 cut(s) 12, 138, 198, 1175
TseFI GTSAC 2 cut(s) 733, 757
Tsp45I GTSAC 2 cut(s) 733, 757
TspGWI ACGGA 1 cut(s) 1774
TspRI CASTG 4 cut(s) 12, 138, 198, 1175
VpaK11BI GGWCC 2 cut(s) 509, 2097
VspI ATTAAT 1 cut(s) 1832
XagI CCTNNNNNAGG 1 cut(s) 907
XapI RAATTY 2 cut(s) 1069, 1313
XbaI TCTAGA 1 cut(s) 1888
XceI RCATGY 4 cut(s) 870, 1049, 1860, 1864
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 793
XmnI GAANNNNTTC 1 cut(s) 1459
XspI CTAG 1 cut(s) 1889
ZrmI AGTACT 2 cut(s) 1233, 1733
Zsp2I ATGCAT 2 cut(s) 1479, 1862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.