MD00G1168000.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000070
Physical Location & Seq
Reverse (-)
38637350 .. 38642274
4925 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1168000.v1.1.491

Sequence Viewer

Length: 2718 bp
ATGCCGGGAGAGGTTTTTCTTGTGGCATTCCTCCAAGTGCTGGTTGACAAGTTGGCGCAACGTGAGGTCTTGAAGTACTTTGGACTCGTAAAGGGCGTCGATCAAAACCTGAAGAAATGGAGTGCCACCTTGTCTGCAATTGGAGCGGTTCTGAATGACGCGGAGGAAAGGCAACTGATGGCTGAGAGCAACGCACTGAAGCTCTGGCTCGATGATCTCAAGGACTTGGCTTTTGATGCGGAAGACGTGTTGGATAAATATCATACTAAAATGTTGAAACGTCAGATACAACATGCTCATTCCAGCACAAGAAGCAAAGCATGGAAATCAATTCCTAATCGTGTTTTCAACTTCAAAATGAACTCGGAAATACAGAAGATTTCCGAGCGATTACAAGAGATATCTGAAAGAAAAGACCAGCTTAGTTTGAAAATTGATACTAGGACATTGACTACAAAGGCACGCCAACACATATCGCCGAGTACTAGTCTACCAGATGGACCTGTGATTGGAAGGGATGAGGACAAAGGGAAGATTGTTGAGCTGCTGTCGAAACAAGAGCATCGGGCTGTCAATTTCGAGGTAGTTGCAATTGTCGGTATGGCTGGAGTCGGAAAGACAACACTTGCTGGACAAGTACTTAAAGATATGGTTGCAACCCAAATGTTTCAACCAGCCGTTTGGGTGTGCGTATCTGACGACTTCAACCTTGAAAGAGTGACAAAGCAAATTCTTGAATCAATCACATCTCGGCAATGTACCACAGAAGATTACAATAAGGTTCAAAATGATCTGCATAAGAAGTTAGCGGGGAAGAAGTTTTTAATTGTTTTAGACGATGTTTGGAAAACGTGTAGCTACGGTGAATGGAAGAAGCTGCAGTCCACTTTTCATGATGGAGCACAAGGAAGCAAGATAGTTGTGACAACACGTGATACAGATGTTTCAAAAATGATGGGAGCTGCCACGCTGGTTCACAATTTGGTGCCTATGGAAAATCATTTTTGTTTACAAGTATTTGAGCAGCATGCATTCTTAAATTCTAACGACAAGCCATCAAATTACGAGTTACTTAAGGAGAAAATTGTTGCAAAGTGTAGGGGATTGCCTTTGGCCGCGAGGACCCTTGGTGGTGTTCTACTTCGTAGAGAAATAGACGAATGGGAAGAACTATTGAACAACAAGTTGTGGAGTCTCTCAAATGAGCATGACATACTTCCTGTGTTGAGACTAAGTTACTTTTATCTTCCTTCACATTTGAAAAGATGCTTTGCCTATTGCTCAATAATTCCAAATGACTATGAATTCGGGGAGATGCAAATGATCCTTCTGTGGATGGCCGAGGGTTTGATTCATCCTCAACCAGAAGATAATAAGCAAATTGAAGATTTAGGTGCTGATTATTTTCGGGAGCTCGTATCTAGGTCATTGTTTCAAAAATTGGAGGATAAGCAAAATGATGATGGTGTACAACTTAGATGTTTTCCGAAGGCTCGCCATTCGTCTTACATTATCGGTCGTTATGATGGGGTTAAAAGATTTGAGGCATTTTCTGAAGTGAAATGTATGCGAACCTTCTTGCCACTCAGAAAGGGTTCTGCCTACAATTATTTAAGCCATCAGGTTACTTCTGATTTATTGCCAAAATTGCAGTACTTGCGGGTGCTTTCTTTTAATGGCTATAGAATAACTGAGCTGCCAAACTCAATTGGTGATTTGACATATCTATGGTATCTTGACCTTTCCTACACAGCTATAAGTAGTTTGCCTAAATCGATAAGTACTCTTTACAACTTGCAGACATTGATATTGGAATGCTGTTACGGTTTGAAGTCATTGCCTGCAGACATGAGTAATCTAATTAATTTGCGCCATCTCAACAACTCAGATGTATCTTCGTTGGAAGGAATGCCTCTAAAACTAGGTAGATTGGTGAATCTCCAATCTTTGCCTAATTTTATGGTCAATGCTGGAAGTGATCAATCAGGAATACGAGAGATGGGGCCCCTATCGCATCTCCGAGGGACATTGTGCATCTCAAGATTGGAGAATGTGACTGATGTTGAGGATGCTCAAGGGGCCAACTTAAAATACAAGGCGAGGCTTGATTCGTTGGTCTTAAAATGGTCTCATTCAAGTGACACAAGAGAAATGGAATCTGCTGTGCTTGACATGTTAGAGCCTCATAGAAAGATCAAGGAGCTCACCATCAAGAGTTATGCCGGCAAGGAATTTTCAACATGGGTTGGAGGTCATTTGTTCTCCAATATGGTGCTTGTGCGCTTAGAGGAATGTAATAATTGTTTGTCGTTGCCACCTCTTGGACAATTGCCTCTACTCAAAGAACTTTATATTAGAGGAATGAATGCAGTGGAAAGTGTTGGTGCTGAGTTTTATGGAGATCGTAACTTGCCCTTTCGGGTATTAGAGACTCTTGAGTTTGTGGAAATGCAGCATTGGAAAGAATGGCTTCCTTTCCAACTGGATCATGAAAGTGGTGTTTTCCCTTACCTGAAAACACTCTTAGTAAAAAAATGTTCTAAACTGGAGGGTAAGCTGCCAGAGAACCTCAATTCTTTAGCTAAGCTTGAAATTGTTGAATGTGAAGAATTAGTGGTTTCAACTGCCAACTACAAACGACTTTGTCAATTAAACATTGACGTTTGTGAAGTGTTGGTGCATACAGCTGCTAAGGGGATTTGTTCAACAAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

906

Amino Acids

103.07

Weight (kDa)

6.78

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 101 3e-20 Rx N-terminal domain
NB-ARC PF00931 174 - 347 3.5e-35 NB-ARC domain
WHD_DRP PF23559 429 - 485 2.4e-16 Disease resistance protein Winged helix domain
LRR_14 PF23598 546 - 868 1.1e-23 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 664 - 788 3.5e-37 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 985
AccB7I CCANNNNNTGG 2 cut(s) 40, 2321
AccBSI CCGCTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 490
AccII CGCG 2 cut(s) 161, 1118
AciI CCGC 6 cut(s) 146, 161, 239, 809, 1116, 1660
AclWI GGATC 2 cut(s) 1318, 2493
AcoI YGGCCR 2 cut(s) 1113, 1338
AcsI RAATTY 4 cut(s) 729, 1039, 1304, 2231
AcuI CTGAAG 3 cut(s) 131, 218, 1575
AcvI CACGTG 1 cut(s) 932
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 7 cut(s) 77, 484, 639, 760, 1470, 1655, 1783
AfiI CCNNNNNNNGG 3 cut(s) 40, 509, 2321
AflII CTTAAG 1 cut(s) 1073
AflIII ACRYGT 4 cut(s) 246, 851, 929, 2172
AhlI ACTAGT 1 cut(s) 485
AjiI CACGTC 1 cut(s) 247
Alw21I GWGCWC 3 cut(s) 904, 1416, 2205
Alw26I GTCTC 4 cut(s) 1199, 1222, 2133, 2423
AlwI GGATC 2 cut(s) 1318, 2493
AoxI GGCC 4 cut(s) 1113, 1338, 2003, 2079
ApaI GGGCCC 1 cut(s) 2007
ApeKI GCWGC 8 cut(s) 544, 877, 962, 1024, 1696, 2452, 2557, 2687
ApoI RAATTY 4 cut(s) 729, 1039, 1304, 2231
ArsI GACNNNNNNTTYG 4 cut(s) 215, 247, 1289, 1321
AseI ATTAAT 1 cut(s) 1863
Asp700I GAANNNNTTC 2 cut(s) 1594, 2469
AspLEI GCGC 3 cut(s) 58, 1872, 2283
AspS9I GGNCC 5 cut(s) 500, 1122, 2003, 2004, 2079
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 4 cut(s) 875, 1724, 1945, 2197
AvaII GGWCC 2 cut(s) 500, 1122
BaeGI GKGCMC 1 cut(s) 2007
BaeI ACNNNNGTAYC 2 cut(s) 927, 960
BanI GGYRCC 1 cut(s) 985
BanII GRGCYC 3 cut(s) 1416, 2007, 2205
BbrPI CACGTG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 3 cut(s) 904, 1416, 2205
BbvI GCAGC 8 cut(s) 531, 864, 949, 1036, 1683, 2464, 2544, 2674
BceAI ACGGC 1 cut(s) 662
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BclI TGATCA 1 cut(s) 1978
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 4 cut(s) 1199, 1222, 2133, 2423
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 4 cut(s) 441, 486, 1422, 1922
BfmI CTRYAG 3 cut(s) 878, 1681, 1842
BfrI CTTAAG 1 cut(s) 1073
BisI GCNGC 9 cut(s) 545, 878, 963, 1025, 1116, 1697, 2453, 2558, 2688
BlpI GCTNAGC 1 cut(s) 2583
BlsI GCNGC 9 cut(s) 546, 879, 964, 1026, 1117, 1698, 2454, 2559, 2689
BmcAI AGTACT 5 cut(s) 77, 484, 639, 1655, 1783
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 2 cut(s) 500, 1122
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 5 cut(s) 500, 1122, 2003, 2004, 2079
BmiI GGNNCC 6 cut(s) 987, 1124, 2004, 2005, 2006, 2080
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 7 cut(s) 226, 571, 1256, 1305, 2023, 2043, 2059
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 627, 2567
Bpu10I CCTNAGC 1 cut(s) 2691
Bpu1102I GCTNAGC 1 cut(s) 2583
BpuEI CTTGAG 4 cut(s) 203, 2023, 2058, 2456
BpuMI CCSGG 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 1775
BsaAI YACGTR 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 2133
BsaJI CCNNGG 3 cut(s) 1126, 1341, 2020
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 509, 2321
Bse118I RCCGGY 1 cut(s) 2222
Bse1I ACTGG 2 cut(s) 2487, 2550
Bse3DI GCAATG 2 cut(s) 761, 1835
Bse8I GATNNNNATC 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 1775
BseDI CCNNGG 3 cut(s) 1126, 1341, 2020
BseGI GGATG 4 cut(s) 523, 1341, 1354, 2074
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 3 cut(s) 40, 509, 2321
BseMI GCAATG 2 cut(s) 761, 1835
BseMII CTCAG 5 cut(s) 174, 1600, 1683, 1899, 2379
BseNI ACTGG 2 cut(s) 2487, 2550
BseSI GKGCMC 1 cut(s) 2007
BseXI GCAGC 8 cut(s) 531, 864, 949, 1036, 1683, 2464, 2544, 2674
Bsh1236I CGCG 2 cut(s) 161, 1118
Bsh1285I CGRYCG 1 cut(s) 1519
BshFI GGCC 4 cut(s) 1115, 1340, 2005, 2081
BshNI GGYRCC 1 cut(s) 985
BshVI ATCGAT 1 cut(s) 1775
BsiEI CGRYCG 1 cut(s) 1519
BsiHKAI GWGCWC 3 cut(s) 904, 1416, 2205
BsiSI CCGG 2 cut(s) 5, 2223
BslFI GGGAC 1 cut(s) 2038
BslI CCNNNNNNNGG 3 cut(s) 40, 509, 2321
BsmAI GTCTC 4 cut(s) 1199, 1222, 2133, 2423
BsmFI GGGAC 1 cut(s) 2038
BsmI GAATGC 5 cut(s) 26, 1031, 1820, 1914, 2371
BsnI GGCC 4 cut(s) 1115, 1340, 2005, 2081
Bso31I GGTCTC 1 cut(s) 2133
Bsp120I GGGCCC 1 cut(s) 2003
Bsp1286I GDGCHC 4 cut(s) 904, 1416, 2007, 2205
Bsp1407I TGTACA 1 cut(s) 1468
Bsp143I GATC 8 cut(s) 100, 214, 790, 1323, 1978, 2193, 2401, 2485
Bsp1720I GCTNAGC 1 cut(s) 2583
BspACI CCGC 6 cut(s) 146, 161, 239, 809, 1116, 1660
BspANI GGCC 4 cut(s) 1115, 1340, 2005, 2081
BspCNI CTCAG 5 cut(s) 175, 1599, 1684, 1898, 2380
BspDI ATCGAT 1 cut(s) 1775
BspFNI CGCG 2 cut(s) 161, 1118
BspHI TCATGA 2 cut(s) 892, 2488
BspLI GGNNCC 6 cut(s) 987, 1124, 2004, 2005, 2006, 2080
BspMAI CTGCAG 2 cut(s) 882, 1846
BspPI GGATC 2 cut(s) 1318, 2493
BspT107I GGYRCC 1 cut(s) 985
BspTI CTTAAG 1 cut(s) 1073
BspTNI GGTCTC 1 cut(s) 2133
BsrBI CCGCTC 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 761, 1835
BsrFI RCCGGY 1 cut(s) 2222
BsrGI TGTACA 1 cut(s) 1468
BsrI ACTGG 2 cut(s) 2487, 2550
BssAI RCCGGY 1 cut(s) 2222
BssECI CCNNGG 3 cut(s) 1126, 1341, 2020
BssMI GATC 8 cut(s) 100, 214, 790, 1323, 1978, 2193, 2401, 2485
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 1126
Bst4CI ACNGT 2 cut(s) 863, 1826
BstACI GRCGYC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 1073
BstAPI GCANNNNNTGC 1 cut(s) 1657
BstAUI TGTACA 1 cut(s) 1468
BstBAI YACGTR 1 cut(s) 932
BstC8I GCNNGC 5 cut(s) 463, 1029, 1495, 1842, 2224
BstF5I GGATG 4 cut(s) 523, 1341, 1354, 2074
BstFNI CGCG 2 cut(s) 161, 1118
BstHHI GCGC 3 cut(s) 58, 1872, 2283
BstKTI GATC 8 cut(s) 103, 217, 793, 1326, 1981, 2196, 2404, 2488
BstMAI GTCTC 4 cut(s) 1199, 1222, 2133, 2423
BstMBI GATC 8 cut(s) 100, 214, 790, 1323, 1978, 2193, 2401, 2485
BstMCI CGRYCG 1 cut(s) 1519
BstMWI GCNNNNNNNGC 7 cut(s) 143, 236, 312, 1648, 1657, 2011, 2078
BstNSI RCATGY 3 cut(s) 296, 1031, 2176
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 3 cut(s) 878, 1681, 1842
BstSLI GKGCMC 1 cut(s) 2007
BstUI CGCG 2 cut(s) 161, 1118
BstV1I GCAGC 8 cut(s) 531, 864, 949, 1036, 1683, 2464, 2544, 2674
BstV2I GAAGAC 1 cut(s) 249
BstXI CCANNNNNNTGG 1 cut(s) 681
Bsu15I ATCGAT 1 cut(s) 1775
BsuRI GGCC 4 cut(s) 1115, 1340, 2005, 2081
BsuTUI ATCGAT 1 cut(s) 1775
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 4 cut(s) 523, 1341, 1354, 2074
BtsI GCAGTG 1 cut(s) 2376
BtsIMutI CAGTG 2 cut(s) 194, 2376
Cac8I GCNNGC 5 cut(s) 463, 1029, 1495, 1842, 2224
CciI TCATGA 2 cut(s) 892, 2488
CfoI GCGC 3 cut(s) 58, 1872, 2283
Cfr10I RCCGGY 1 cut(s) 2222
Cfr13I GGNCC 5 cut(s) 500, 1122, 2003, 2004, 2079
ClaI ATCGAT 1 cut(s) 1775
CseI GACGC 2 cut(s) 85, 167
Csp6I GTAC 7 cut(s) 76, 483, 638, 759, 1469, 1654, 1782
CviAII CATG 9 cut(s) 293, 321, 893, 1028, 1208, 1849, 2173, 2241, 2489
CviQI GTAC 7 cut(s) 76, 483, 638, 759, 1469, 1654, 1782
DpnI GATC 8 cut(s) 102, 216, 792, 1325, 1980, 2195, 2403, 2487
DpnII GATC 8 cut(s) 100, 214, 790, 1323, 1978, 2193, 2401, 2485
EaeI YGGCCR 2 cut(s) 1113, 1338
Ecl136II GAGCTC 2 cut(s) 1414, 2203
Eco130I CCWWGG 1 cut(s) 1126
Eco24I GRGCYC 3 cut(s) 1416, 2007, 2205
Eco31I GGTCTC 1 cut(s) 2133
Eco32I GATATC 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 500, 1122
Eco53kI GAGCTC 2 cut(s) 1414, 2203
Eco57I CTGAAG 3 cut(s) 131, 218, 1575
Eco72I CACGTG 1 cut(s) 932
EcoICRI GAGCTC 2 cut(s) 1414, 2203
EcoO109I RGGNCCY 3 cut(s) 1122, 2003, 2004
EcoRI GAATTC 1 cut(s) 1304
EcoRV GATATC 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 1126
EcoT22I ATGCAT 1 cut(s) 1033
EcoT38I GRGCYC 3 cut(s) 1416, 2007, 2205
ErhI CCWWGG 1 cut(s) 1126
FaeI CATG 9 cut(s) 296, 324, 896, 1031, 1211, 1852, 2176, 2244, 2492
FalI AAGNNNNNCTT 4 cut(s) 405, 437, 2454, 2486
FaqI GGGAC 1 cut(s) 2038
FatI CATG 9 cut(s) 292, 320, 892, 1027, 1207, 1848, 2172, 2240, 2488
FauI CCCGC 2 cut(s) 802, 1653
FbaI TGATCA 1 cut(s) 1978
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 9 cut(s) 545, 878, 963, 1025, 1116, 1697, 2453, 2558, 2688
FokI GGATG 4 cut(s) 530, 1341, 1348, 2081
FriOI GRGCYC 3 cut(s) 1416, 2007, 2205
Fsp4HI GCNGC 9 cut(s) 545, 878, 963, 1025, 1116, 1697, 2453, 2558, 2688
FspBI CTAG 4 cut(s) 441, 486, 1422, 1922
GlaI GCGC 3 cut(s) 57, 1871, 2282
GluI GCNGC 9 cut(s) 545, 878, 963, 1025, 1116, 1697, 2453, 2558, 2688
GsuI CTGGAG 2 cut(s) 627, 2567
HaeIII GGCC 4 cut(s) 1115, 1340, 2005, 2081
HapII CCGG 2 cut(s) 5, 2223
HgaI GACGC 2 cut(s) 85, 167
HhaI GCGC 3 cut(s) 58, 1872, 2283
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 9 cut(s) 296, 324, 896, 1031, 1211, 1852, 2176, 2244, 2492
Hin6I GCGC 3 cut(s) 56, 1870, 2281
HinP1I GCGC 3 cut(s) 56, 1870, 2281
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 2585
HinfI GANTC 9 cut(s) 84, 609, 737, 1192, 1351, 1936, 2108, 2156, 2431
HpaII CCGG 2 cut(s) 5, 2223
HphI GGTGA 4 cut(s) 875, 1724, 1945, 2197
Hpy166II GTNNAC 6 cut(s) 46, 491, 885, 976, 1010, 1469
Hpy8I GTNNAC 6 cut(s) 46, 491, 885, 976, 1010, 1469
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 507, 1260, 1337, 1483, 1585, 1898
HpyCH4III ACNGT 2 cut(s) 863, 1826
HpyCH4IV ACGT 6 cut(s) 61, 246, 280, 851, 931, 2661
HpyF10VI GCNNNNNNNGC 7 cut(s) 143, 236, 312, 1648, 1657, 2011, 2078
HpySE526I ACGT 6 cut(s) 61, 246, 280, 851, 931, 2661
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 9 cut(s) 296, 324, 896, 1031, 1211, 1852, 2176, 2244, 2492
HspAI GCGC 3 cut(s) 56, 1870, 2281
KroI GCCGGC 1 cut(s) 2222
KroNI GCCGGC 1 cut(s) 2224
Ksp22I TGATCA 1 cut(s) 1978
Kzo9I GATC 8 cut(s) 100, 214, 790, 1323, 1978, 2193, 2401, 2485
LmnI GCTCC 5 cut(s) 143, 899, 959, 1411, 2200
Lsp1109I GCAGC 8 cut(s) 531, 864, 949, 1036, 1683, 2464, 2544, 2674
LweI GCATC 7 cut(s) 226, 571, 1256, 1305, 2023, 2043, 2059
MaeI CTAG 4 cut(s) 441, 486, 1422, 1922
MaeII ACGT 6 cut(s) 61, 246, 280, 851, 931, 2661
MaeIII GTNAC 9 cut(s) 718, 922, 1068, 1235, 1624, 1820, 2053, 2138, 2405
MalI GATC 8 cut(s) 102, 216, 792, 1325, 1980, 2195, 2403, 2487
MbiI CCGCTC 1 cut(s) 146
MboI GATC 8 cut(s) 100, 214, 790, 1323, 1978, 2193, 2401, 2485
MfeI CAATTG 4 cut(s) 138, 591, 1707, 2327
MhlI GDGCHC 4 cut(s) 904, 1416, 2007, 2205
MlyI GAGTC 4 cut(s) 78, 618, 1201, 2425
MmeI TCCRAC 5 cut(s) 231, 592, 1881, 2227, 2503
Mph1103I ATGCAT 1 cut(s) 1033
MroNI GCCGGC 1 cut(s) 2222
MroXI GAANNNNTTC 2 cut(s) 1594, 2469
MslI CAYNNNNRTG 3 cut(s) 1726, 2136, 2493
MspA1I CMGCKG 1 cut(s) 2687
MspCI CTTAAG 1 cut(s) 1073
MspI CCGG 2 cut(s) 5, 2223
MspR9I CCNGG 1 cut(s) 6
MunI CAATTG 4 cut(s) 138, 591, 1707, 2327
Mva1269I GAATGC 5 cut(s) 26, 1031, 1820, 1914, 2371
MvnI CGCG 2 cut(s) 161, 1118
MwoI GCNNNNNNNGC 7 cut(s) 143, 236, 312, 1648, 1657, 2011, 2078
NaeI GCCGGC 1 cut(s) 2224
NciI CCSGG 1 cut(s) 6
NdeII GATC 8 cut(s) 100, 214, 790, 1323, 1978, 2193, 2401, 2485
NgoMIV GCCGGC 1 cut(s) 2222
NlaIII CATG 9 cut(s) 296, 324, 896, 1031, 1211, 1852, 2176, 2244, 2492
NlaIV GGNNCC 6 cut(s) 987, 1124, 2004, 2005, 2006, 2080
NmeAIII GCCGAG 3 cut(s) 504, 730, 1366
NmuCI GTSAC 4 cut(s) 718, 922, 2053, 2138
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 3 cut(s) 296, 1031, 2176
PaeI GCATGC 1 cut(s) 1031
PagI TCATGA 2 cut(s) 892, 2488
PciI ACATGT 1 cut(s) 2172
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 5 cut(s) 26, 1031, 1820, 1914, 2371
PdiI GCCGGC 1 cut(s) 2224
PdmI GAANNNNTTC 2 cut(s) 1594, 2469
PfeI GAWTC 5 cut(s) 737, 1351, 1936, 2108, 2156
PflFI GACNNNGTC 1 cut(s) 2643
PflMI CCANNNNNTGG 2 cut(s) 40, 2321
PkrI GCNGC 9 cut(s) 546, 879, 964, 1026, 1117, 1698, 2454, 2559, 2689
PleI GAGTC 4 cut(s) 78, 617, 1200, 2425
PmaCI CACGTG 1 cut(s) 932
PmlI CACGTG 1 cut(s) 932
PpsI GAGTC 4 cut(s) 78, 617, 1200, 2425
Ppu21I YACGTR 1 cut(s) 932
PpuMI RGGWCCY 1 cut(s) 1122
PscI ACATGT 1 cut(s) 2172
PshBI ATTAAT 1 cut(s) 1863
Psp124BI GAGCTC 2 cut(s) 1416, 2205
Psp5II RGGWCCY 1 cut(s) 1122
PspCI CACGTG 1 cut(s) 932
PspN4I GGNNCC 6 cut(s) 987, 1124, 2004, 2005, 2006, 2080
PspOMI GGGCCC 1 cut(s) 2003
PspPI GGNCC 5 cut(s) 500, 1122, 2003, 2004, 2079
PspPPI RGGWCCY 1 cut(s) 1122
PstI CTGCAG 2 cut(s) 882, 1846
PsyI GACNNNGTC 1 cut(s) 2643
PvuII CAGCTG 1 cut(s) 2687
RsaI GTAC 7 cut(s) 77, 484, 639, 760, 1470, 1655, 1783
RsaNI GTAC 7 cut(s) 76, 483, 638, 759, 1469, 1654, 1782
RseI CAYNNNNRTG 3 cut(s) 1726, 2136, 2493
SacI GAGCTC 2 cut(s) 1416, 2205
SatI GCNGC 9 cut(s) 545, 878, 963, 1025, 1116, 1697, 2453, 2558, 2688
Sau3AI GATC 8 cut(s) 100, 214, 790, 1323, 1978, 2193, 2401, 2485
Sau96I GGNCC 5 cut(s) 500, 1122, 2003, 2004, 2079
ScaI AGTACT 5 cut(s) 77, 484, 639, 1655, 1783
SchI GAGTC 4 cut(s) 78, 618, 1201, 2425
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 4 cut(s) 904, 1416, 2007, 2205
SfaNI GCATC 7 cut(s) 226, 571, 1256, 1305, 2023, 2043, 2059
SfcI CTRYAG 3 cut(s) 878, 1681, 1842
SinI GGWCC 2 cut(s) 500, 1122
SmiMI CAYNNNNRTG 3 cut(s) 1726, 2136, 2493
SmlI CTYRAG 5 cut(s) 218, 1073, 2038, 2073, 2435
SmoI CTYRAG 5 cut(s) 218, 1073, 2038, 2073, 2435
SpeI ACTAGT 1 cut(s) 485
SphI GCATGC 1 cut(s) 1031
SsiI CCGC 6 cut(s) 146, 161, 239, 809, 1116, 1660
SspMI CTAG 4 cut(s) 441, 486, 1422, 1922
SstI GAGCTC 2 cut(s) 1416, 2205
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 1126
TaaI ACNGT 2 cut(s) 863, 1826
TaiI ACGT 6 cut(s) 64, 249, 283, 854, 934, 2664
TaqI TCGA 5 cut(s) 99, 210, 551, 579, 1775
TaqII GACCGA 1 cut(s) 1505
TatI WGTACW 6 cut(s) 75, 482, 637, 1468, 1653, 1781
TauI GCSGC 1 cut(s) 1118
TfiI GAWTC 5 cut(s) 737, 1351, 1936, 2108, 2156
TscAI CASTG 2 cut(s) 201, 2376
TseFI GTSAC 4 cut(s) 718, 922, 2053, 2138
TseI GCWGC 8 cut(s) 544, 877, 962, 1024, 1696, 2452, 2557, 2687
Tsp45I GTSAC 4 cut(s) 718, 922, 2053, 2138
TspDTI ATGAA 6 cut(s) 374, 881, 1317, 1343, 2378, 2505
TspRI CASTG 2 cut(s) 201, 2376
Tth111I GACNNNGTC 1 cut(s) 2643
Van91I CCANNNNNTGG 2 cut(s) 40, 2321
Vha464I CTTAAG 1 cut(s) 1073
VpaK11BI GGWCC 2 cut(s) 500, 1122
VspI ATTAAT 1 cut(s) 1863
XapI RAATTY 4 cut(s) 729, 1039, 1304, 2231
XceI RCATGY 3 cut(s) 296, 1031, 2176
XmiI GTMKAC 1 cut(s) 490
XmnI GAANNNNTTC 2 cut(s) 1594, 2469
XspI CTAG 4 cut(s) 441, 486, 1422, 1922
ZrmI AGTACT 5 cut(s) 77, 484, 639, 1655, 1783
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.