Rmu_sc0002022.1_g000004

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002022.1
OG0000070
Physical Location & Seq
Forward (+)
15763 .. 24236
8474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002022.1_g000004.1.cds

Sequence Viewer

Length: 1959 bp
atgggagaggctgttcttggggcattcctcccggtgctgcttgagaagttggcgaatcgagaggtcattgagtacttcggacgccttaagggggtcgacaaaaaggtgctggagaaatggactggaatgttgactgcaattgaagcggtgctgagtgatgcggaggagaagcaactaacacaaaccagtgtgaaactgtggctagatgatctcagagatttggcttacgatgttcaagacatattggacatatttgataccaaaatgctgaagcgaaggatagaaagacaagaaggaagcaaaagcaagttatgcatcagctcactttctaaacttaaattcaattttagtctgaactcagaaatcaagaagattactgatcgactagaagggataactactcgagaaaagcagtttggtttgaagaaacttggagggtctaaaaagccatggaaaatgccacccactacttctcaactagatgcacctgtgatcggaagggatgaagcaaaagagcagattcttaaggatttgctctcaaaagacaagcatcgtaccaccgattttcagaattttcatgtggtttccattgttggtacggctggactaggaaagacaacacttgctaaacatgtattcaacgacgctgcagctgaacagttttacccaaagggatgggtgtctgtgtccgatgactttgacattgtaagggtgacagcagcaattcttgaatcagtcacgtcagctcatgttcaggaattcaaggagcttaattcaattcaggagaagttaagtaaggaattggctggcaagaagtttttaattgttctagatgatgtctgggacacatgtaagtatggtcaatggacaacactacagtcctcctttcgtcttggagcagctggaagtaagatcattgtgacgacacgcgataccaatgttgcaaaaatgatgggagacactagcccttataacttggagtcgatgtcaaaagatgattgttggaaaatctttgagcaccatgcactcttaaacaacagaccccaagatgctgagttacttcaggaaaaaattgtagtaaaatgcaatggattgccgttggctgcaaggacacttggtggtcttttacgttgtaaaagagtaattgaatgggaagaaatattagaccacaagatgtggactctatcagaccgccagacagacatccttccagcattaaaattgagctatcattatctcccttcgaatttgaaacagtgtttctcctactgcgcaatacttccaaatgattatgaatttggggagatgcaattgatccttttgtggatggcagagggtttgattccgcagcaacaaaataaacaaatggaagatttgggccgcgactattttcaagagttggtgacaatggaggttggagctgttgctgccatgaggtatgtcaaagatggaatcaaagctgctaggttagttatgcaacataccgaacacactctgctagttggagagcaagcctcagtgtttgctatttcaatgggtcttccgggaccaacaaaccttagttcatcagagtcgatggagaagtggattaaatggaaagaaaatcactgccaacctaacttttggaaagacgttgtacctaaaggtggatgtggcccttatcatgcaaaggactttgtaggcctttatgatgagacatgttcaaataccactccagtaggcaatattagatccagttctcatattggtcttcacaaccatgacaccatatcaatggctgttattgataaaatgggtcacattgctgttggtacgtcgactaatggagccacattcaagatcccagggagggtgggtgatggacctattgcaggatcttcttcatatgctgatgatgaagtgggtggttgtggtgcaactggagatggtgacatcatgatgcgtttccttccatggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

652

Amino Acids

72.88

Weight (kDa)

6.28

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 972
Acc16I TGCGCA 1 cut(s) 1273
AccI GTMKAC 2 cut(s) 96, 1817
AccII CGCG 2 cut(s) 930, 1383
AciI CCGC 5 cut(s) 146, 161, 1192, 1346, 1381
AclWI GGATC 4 cut(s) 1309, 1725, 1834, 1882
AcsI RAATTY 5 cut(s) 338, 571, 758, 1246, 1295
AcuI CTGAAG 2 cut(s) 290, 1046
AcyI GRCGYC 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 1118
AfaI GTAC 5 cut(s) 74, 556, 598, 1638, 1813
AfiI CCNNNNNNNGG 5 cut(s) 91, 494, 1646, 1849, 1871
AflII CTTAAG 2 cut(s) 86, 524
AflIII ACRYGT 3 cut(s) 631, 848, 1697
AjiI CACGTC 1 cut(s) 741
AjnI CCWGG 1 cut(s) 1843
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 8 cut(s) 321, 653, 746, 769, 902, 1227, 1421, 1460
AluI AGCT 8 cut(s) 321, 653, 746, 769, 902, 1227, 1421, 1460
Alw21I GWGCWC 1 cut(s) 1020
Alw26I GTCTC 2 cut(s) 951, 1688
AlwI GGATC 4 cut(s) 1309, 1725, 1834, 1882
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 3 cut(s) 1378, 1654, 1681
ApeKI GCWGC 9 cut(s) 37, 647, 650, 719, 899, 1103, 1348, 1427, 1460
ApoI RAATTY 5 cut(s) 338, 571, 758, 1246, 1295
AspLEI GCGC 1 cut(s) 1274
AspS9I GGNCC 4 cut(s) 1378, 1547, 1655, 1862
AsuC2I CCSGG 2 cut(s) 32, 1545
AsuHPI GGTGA 4 cut(s) 724, 1414, 1868, 1940
AsuII TTCGAA 1 cut(s) 1244
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 2 cut(s) 1547, 1862
BaeI ACNNNNGTAYC 2 cut(s) 924, 957
BbsI GAAGAC 2 cut(s) 1532, 1742
Bbv12I GWGCWC 1 cut(s) 1020
BbvI GCAGC 9 cut(s) 24, 634, 662, 731, 911, 1090, 1360, 1414, 1447
BccI CCATC 7 cut(s) 669, 946, 1321, 1442, 1570, 1853, 1919
BceAI ACGGC 2 cut(s) 615, 1081
BciT130I CCWGG 1 cut(s) 1845
BcnI CCSGG 2 cut(s) 32, 1545
BcoDI GTCTC 2 cut(s) 951, 1688
BfaI CTAG 8 cut(s) 203, 386, 479, 608, 830, 963, 1464, 1499
BfmI CTRYAG 2 cut(s) 648, 875
BfrI CTTAAG 2 cut(s) 86, 524
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 3 cut(s) 32, 1545, 1845
Bme18I GGWCC 2 cut(s) 1547, 1862
BmeT110I CYCGRG 1 cut(s) 402
BmgBI CACGTC 1 cut(s) 741
BmgT120I GGNCC 4 cut(s) 1378, 1547, 1655, 1862
BmiI GGNNCC 2 cut(s) 1548, 1828
BmrFI CCNGG 3 cut(s) 32, 1545, 1845
BmsI GCATC 7 cut(s) 148, 324, 472, 559, 1039, 1296, 1929
BpiI GAAGAC 2 cut(s) 1532, 1742
BplI GAGNNNNNCTC 2 cut(s) 1499, 1531
BpmI CTGGAG 3 cut(s) 131, 1698, 1941
Bpu14I TTCGAA 1 cut(s) 1244
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 32, 1545
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 4 cut(s) 449, 1843, 1844, 1952
BsaXI ACNNNNNCTCC 5 cut(s) 27, 971, 1001, 1840, 1870
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 494, 1646, 1849, 1871
Bse1I ACTGG 5 cut(s) 127, 186, 1715, 1734, 1924
Bse3DI GCAATG 2 cut(s) 1093, 1800
BseBI CCWGG 1 cut(s) 1845
BseDI CCNNGG 4 cut(s) 449, 1843, 1844, 1952
BseGI GGATG 5 cut(s) 508, 680, 1203, 1332, 1655
BseLI CCNNNNNNNGG 5 cut(s) 91, 494, 1646, 1849, 1871
BseMI GCAATG 2 cut(s) 1093, 1800
BseMII CTCAG 5 cut(s) 143, 226, 372, 1044, 1530
BseNI ACTGG 5 cut(s) 127, 186, 1715, 1734, 1924
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 9 cut(s) 24, 634, 662, 731, 911, 1090, 1360, 1414, 1447
Bsh1236I CGCG 2 cut(s) 930, 1383
BshFI GGCC 3 cut(s) 1380, 1656, 1683
BsiHKAI GWGCWC 1 cut(s) 1020
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 2 cut(s) 32, 1544
BslFI GGGAC 2 cut(s) 857, 1560
BslI CCNNNNNNNGG 5 cut(s) 91, 494, 1646, 1849, 1871
BsmAI GTCTC 2 cut(s) 951, 1688
BsmFI GGGAC 2 cut(s) 857, 1560
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 3 cut(s) 1380, 1656, 1683
BsoBI CYCGRG 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 1244
Bsp1286I GDGCHC 1 cut(s) 1020
Bsp143I GATC 8 cut(s) 208, 379, 492, 912, 1314, 1730, 1839, 1874
Bsp19I CCATGG 2 cut(s) 449, 1952
BspACI CCGC 5 cut(s) 146, 161, 1192, 1346, 1381
BspANI GGCC 3 cut(s) 1380, 1656, 1683
BspCNI CTCAG 5 cut(s) 144, 225, 371, 1045, 1529
BspFNI CGCG 2 cut(s) 930, 1383
BspHI TCATGA 1 cut(s) 1935
BspLI GGNNCC 2 cut(s) 1548, 1828
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 4 cut(s) 1309, 1725, 1834, 1882
BspT104I TTCGAA 1 cut(s) 1244
BspTI CTTAAG 2 cut(s) 86, 524
BsrDI GCAATG 2 cut(s) 1093, 1800
BsrI ACTGG 5 cut(s) 127, 186, 1715, 1734, 1924
BssECI CCNNGG 4 cut(s) 449, 1843, 1844, 1952
BssMI GATC 8 cut(s) 208, 379, 492, 912, 1314, 1730, 1839, 1874
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 449, 1952
Bst2UI CCWGG 1 cut(s) 1845
Bst4CI ACNGT 4 cut(s) 198, 660, 879, 1257
BstACI GRCGYC 1 cut(s) 82
BstAFI CTTAAG 2 cut(s) 86, 524
BstAPI GCANNNNNTGC 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 1244
BstC8I GCNNGC 2 cut(s) 808, 1512
BstDEI CTNAG 6 cut(s) 152, 212, 358, 1053, 1516, 1559
BstDSI CCRYGG 2 cut(s) 449, 1952
BstENI CCTNNNNNAGG 1 cut(s) 1869
BstF5I GGATG 5 cut(s) 508, 680, 1203, 1332, 1655
BstFNI CGCG 2 cut(s) 930, 1383
BstHHI GCGC 1 cut(s) 1274
BstKTI GATC 8 cut(s) 211, 382, 495, 915, 1317, 1733, 1842, 1877
BstMAI GTCTC 2 cut(s) 951, 1688
BstMBI GATC 8 cut(s) 208, 379, 492, 912, 1314, 1730, 1839, 1874
BstMWI GCNNNNNNNGC 3 cut(s) 143, 312, 1427
BstNI CCWGG 1 cut(s) 1845
BstNSI RCATGY 3 cut(s) 635, 852, 1701
BstSCI CCNGG 3 cut(s) 30, 1543, 1843
BstSFI CTRYAG 2 cut(s) 648, 875
BstUI CGCG 2 cut(s) 930, 1383
BstV1I GCAGC 9 cut(s) 24, 634, 662, 731, 911, 1090, 1360, 1414, 1447
BstV2I GAAGAC 2 cut(s) 1532, 1742
BstX2I RGATCY 3 cut(s) 1730, 1839, 1874
BstXI CCANNNNNNTGG 2 cut(s) 675, 1774
BstYI RGATCY 3 cut(s) 1730, 1839, 1874
BsuRI GGCC 3 cut(s) 1380, 1656, 1683
BtgI CCRYGG 2 cut(s) 449, 1952
BtrI CACGTC 1 cut(s) 741
BtsCI GGATG 5 cut(s) 508, 680, 1203, 1332, 1655
BtsI GCAGTG 1 cut(s) 1606
BtsIMutI CAGTG 4 cut(s) 193, 1262, 1524, 1606
Cac8I GCNNGC 2 cut(s) 808, 1512
CciI TCATGA 1 cut(s) 1935
CfoI GCGC 1 cut(s) 1274
Cfr13I GGNCC 4 cut(s) 1378, 1547, 1655, 1862
CseI GACGC 2 cut(s) 90, 653
Csp6I GTAC 5 cut(s) 73, 555, 597, 1637, 1812
CviQI GTAC 5 cut(s) 73, 555, 597, 1637, 1812
DdeI CTNAG 6 cut(s) 152, 212, 358, 1053, 1516, 1559
DpnI GATC 8 cut(s) 210, 381, 494, 914, 1316, 1732, 1841, 1876
DpnII GATC 8 cut(s) 208, 379, 492, 912, 1314, 1730, 1839, 1874
DraIII CACNNNGTG 1 cut(s) 1118
Eco130I CCWWGG 2 cut(s) 449, 1952
Eco147I AGGCCT 1 cut(s) 1683
Eco47I GGWCC 2 cut(s) 1547, 1862
Eco57I CTGAAG 2 cut(s) 290, 1046
Eco88I CYCGRG 1 cut(s) 402
EcoNI CCTNNNNNAGG 1 cut(s) 1869
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 1 cut(s) 1843
EcoT14I CCWWGG 2 cut(s) 449, 1952
EcoT22I ATGCAT 1 cut(s) 317
ErhI CCWWGG 2 cut(s) 449, 1952
FaqI GGGAC 2 cut(s) 857, 1560
FauNDI CATATG 1 cut(s) 1885
FblI GTMKAC 2 cut(s) 96, 1817
FokI GGATG 5 cut(s) 515, 687, 1190, 1339, 1662
FspBI CTAG 8 cut(s) 203, 386, 479, 608, 830, 963, 1464, 1499
FspI TGCGCA 1 cut(s) 1273
GlaI GCGC 1 cut(s) 1273
GsuI CTGGAG 3 cut(s) 131, 1698, 1941
HaeIII GGCC 3 cut(s) 1380, 1656, 1683
HapII CCGG 2 cut(s) 32, 1544
HgaI GACGC 2 cut(s) 90, 653
HhaI GCGC 1 cut(s) 1274
Hin1I GRCGYC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 1272
HinP1I GCGC 1 cut(s) 1272
HincII GTYRAC 3 cut(s) 97, 132, 1818
HindII GTYRAC 3 cut(s) 97, 132, 1818
HinfI GANTC 8 cut(s) 55, 520, 731, 980, 1180, 1342, 1452, 1571
HpaII CCGG 2 cut(s) 32, 1544
HphI GGTGA 4 cut(s) 724, 1414, 1868, 1940
Hpy166II GTNNAC 4 cut(s) 97, 132, 1179, 1818
Hpy188I TCNGA 9 cut(s) 80, 215, 354, 361, 497, 570, 691, 1189, 1570
Hpy8I GTNNAC 4 cut(s) 97, 132, 1179, 1818
Hpy99I CGWCG 2 cut(s) 647, 1819
HpyAV CCTTC 7 cut(s) 270, 287, 383, 492, 1217, 1251, 1958
HpyCH4III ACNGT 4 cut(s) 198, 660, 879, 1257
HpyCH4IV ACGT 4 cut(s) 740, 1129, 1632, 1814
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 312, 1427
HpyF3I CTNAG 6 cut(s) 152, 212, 358, 1053, 1516, 1559
HpySE526I ACGT 4 cut(s) 740, 1129, 1632, 1814
Hsp92I GRCGYC 1 cut(s) 82
HspAI GCGC 1 cut(s) 1272
Kzo9I GATC 8 cut(s) 208, 379, 492, 912, 1314, 1730, 1839, 1874
LmnI GCTCC 4 cut(s) 766, 896, 1418, 1826
Lsp1109I GCAGC 9 cut(s) 24, 634, 662, 731, 911, 1090, 1360, 1414, 1447
LweI GCATC 7 cut(s) 148, 324, 472, 559, 1039, 1296, 1929
MaeI CTAG 8 cut(s) 203, 386, 479, 608, 830, 963, 1464, 1499
MaeII ACGT 4 cut(s) 740, 1129, 1632, 1814
MaeIII GTNAC 7 cut(s) 712, 736, 919, 1056, 1402, 1796, 1928
MalI GATC 8 cut(s) 210, 381, 494, 914, 1316, 1732, 1841, 1876
MboI GATC 8 cut(s) 208, 379, 492, 912, 1314, 1730, 1839, 1874
MboII GAAGA 8 cut(s) 382, 436, 1166, 1382, 1532, 1742, 1869, 1872
MfeI CAATTG 2 cut(s) 138, 1310
MflI RGATCY 3 cut(s) 1730, 1839, 1874
MhlI GDGCHC 1 cut(s) 1020
MlyI GAGTC 3 cut(s) 989, 1174, 1580
MmeI TCCRAC 3 cut(s) 983, 1396, 1483
Mph1103I ATGCAT 1 cut(s) 317
MseI TTAA 9 cut(s) 87, 336, 525, 771, 791, 821, 1031, 1217, 1590
MslI CAYNNNNRTG 3 cut(s) 1758, 1772, 1937
MspA1I CMGCKG 2 cut(s) 653, 902
MspCI CTTAAG 2 cut(s) 86, 524
MspI CCGG 2 cut(s) 32, 1544
MspR9I CCNGG 3 cut(s) 32, 1545, 1845
MunI CAATTG 2 cut(s) 138, 1310
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 1845
MvnI CGCG 2 cut(s) 930, 1383
MwoI GCNNNNNNNGC 3 cut(s) 143, 312, 1427
NciI CCSGG 2 cut(s) 32, 1545
NcoI CCATGG 2 cut(s) 449, 1952
NdeI CATATG 1 cut(s) 1885
NdeII GATC 8 cut(s) 208, 379, 492, 912, 1314, 1730, 1839, 1874
NlaIV GGNNCC 2 cut(s) 1548, 1828
NmuCI GTSAC 6 cut(s) 712, 736, 919, 1402, 1796, 1928
NsbI TGCGCA 1 cut(s) 1273
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 3 cut(s) 635, 852, 1701
NspV TTCGAA 1 cut(s) 1244
PaeR7I CTCGAG 1 cut(s) 402
PagI TCATGA 1 cut(s) 1935
PasI CCCWGGG 1 cut(s) 1844
PceI AGGCCT 1 cut(s) 1683
PciI ACATGT 3 cut(s) 631, 848, 1697
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 5 cut(s) 55, 520, 731, 1342, 1452
PfoI TCCNGGA 1 cut(s) 1543
PleI GAGTC 3 cut(s) 988, 1174, 1579
PpsI GAGTC 3 cut(s) 988, 1174, 1579
PscI ACATGT 3 cut(s) 631, 848, 1697
PsiI TTATAA 1 cut(s) 972
Psp6I CCWGG 1 cut(s) 1843
PspGI CCWGG 1 cut(s) 1843
PspN4I GGNNCC 2 cut(s) 1548, 1828
PspPI GGNCC 4 cut(s) 1378, 1547, 1655, 1862
PstI CTGCAG 1 cut(s) 652
PsuI RGATCY 3 cut(s) 1730, 1839, 1874
PvuII CAGCTG 2 cut(s) 653, 902
RsaI GTAC 5 cut(s) 74, 556, 598, 1638, 1813
RsaNI GTAC 5 cut(s) 73, 555, 597, 1637, 1812
RseI CAYNNNNRTG 3 cut(s) 1758, 1772, 1937
SalI GTCGAC 2 cut(s) 95, 1816
SaqAI TTAA 9 cut(s) 87, 336, 525, 771, 791, 821, 1031, 1217, 1590
Sau3AI GATC 8 cut(s) 208, 379, 492, 912, 1314, 1730, 1839, 1874
Sau96I GGNCC 4 cut(s) 1378, 1547, 1655, 1862
ScaI AGTACT 1 cut(s) 74
SchI GAGTC 3 cut(s) 989, 1174, 1580
ScrFI CCNGG 3 cut(s) 32, 1545, 1845
SduI GDGCHC 1 cut(s) 1020
SfaNI GCATC 7 cut(s) 148, 324, 472, 559, 1039, 1296, 1929
SfcI CTRYAG 2 cut(s) 648, 875
Sfr274I CTCGAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 1244
SinI GGWCC 2 cut(s) 1547, 1862
SlaI CTCGAG 1 cut(s) 402
SmiMI CAYNNNNRTG 3 cut(s) 1758, 1772, 1937
SmlI CTYRAG 4 cut(s) 41, 86, 402, 524
SmoI CTYRAG 4 cut(s) 41, 86, 402, 524
SseBI AGGCCT 1 cut(s) 1683
SsiI CCGC 5 cut(s) 146, 161, 1192, 1346, 1381
SspI AATATT 2 cut(s) 1161, 1726
SspMI CTAG 8 cut(s) 203, 386, 479, 608, 830, 963, 1464, 1499
StuI AGGCCT 1 cut(s) 1683
StyD4I CCNGG 3 cut(s) 30, 1543, 1843
StyI CCWWGG 2 cut(s) 449, 1952
TaaI ACNGT 4 cut(s) 198, 660, 879, 1257
TaiI ACGT 4 cut(s) 743, 1132, 1635, 1817
TaqI TCGA 8 cut(s) 58, 96, 382, 403, 983, 1244, 1574, 1817
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 1383
TfiI GAWTC 5 cut(s) 55, 520, 731, 1342, 1452
Tru1I TTAA 9 cut(s) 87, 336, 525, 771, 791, 821, 1031, 1217, 1590
Tru9I TTAA 9 cut(s) 87, 336, 525, 771, 791, 821, 1031, 1217, 1590
TscAI CASTG 4 cut(s) 193, 1262, 1524, 1613
TseFI GTSAC 6 cut(s) 712, 736, 919, 1402, 1796, 1928
TseI GCWGC 9 cut(s) 37, 647, 650, 719, 899, 1103, 1348, 1427, 1460
Tsp45I GTSAC 6 cut(s) 712, 736, 919, 1402, 1796, 1928
TspDTI ATGAA 6 cut(s) 519, 566, 1308, 1554, 1872, 1911
TspRI CASTG 4 cut(s) 193, 1262, 1524, 1613
Vha464I CTTAAG 2 cut(s) 86, 524
VpaK11BI GGWCC 2 cut(s) 1547, 1862
XagI CCTNNNNNAGG 1 cut(s) 1869
XapI RAATTY 5 cut(s) 338, 571, 758, 1246, 1295
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 3 cut(s) 635, 852, 1701
XhoI CTCGAG 1 cut(s) 402
XmiI GTMKAC 2 cut(s) 96, 1817
XspI CTAG 8 cut(s) 203, 386, 479, 608, 830, 963, 1464, 1499
ZrmI AGTACT 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.