MD02G1293200.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
34872666 .. 34873502
837 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1293200.v1.1.491

Sequence Viewer

Length: 837 bp
ATGCATGACCTTGTTGGTGATTTGGCAAGTTTGGTATTGGGAGAAATATGTTTCAGATTGGAGGATAAGCTGGATCATAGATGTTCTCTGAAGACTTGTCATTCATCATACATTCTTGGTAAGCATGATGGGGTTATTAAATTTGAGGCCTTCAAAGAAGCCACACATTTGCGGACTTTCCTACCACTGACACTTTCAAAAGACTTGTTTAACTTTCTGACTTGTAAGGTTACTCTTGATTTGTTGCCAAGAATGGAATACCTATGGGTGCTTTCTCTAAATGGCTATCGGATAATGCAGCTTCCAGATTCAATTGGTAAAGTGAAGCATCTACAGTACCTTGATCTTACTAACACAGAGATAACAAGTTTACCTGAATCAATAAGCACTCTTCACAGCTTACAAACACTGATTTTAGATCATTGTTCTCGTTTGAAGGCTCTACCTACAAACTTAAGGAATCTAAGTAATTTGCGTCATCTAAACAATTCAAATGTGCCTGCATTGGAAGTAATGCCTGCAGAACTAGGTCGTTTGACTAATCTACAAACATTGCAAACATTTGTGGTGGGCAAAGAAAGCGGGTTGGGAATAAGCGAGATCATGGGCCTATTGCATCTTCGAGGGACATTACATCTCTTAAGATTGGAGAATGTGCTTGATGTTCAAGATGCAATGAAAGCCAACTTTGTTAATAAGGATGGGCTTGATGAACTTGTACTGGAATGGAGTAACAAAAAGGAAATGAAAATAGATGTTCTTGACAGTCTACAACCTCATCAAAACCTTCAAGTGCTCAACATCAGGCGTTATGGCGGTTTGAAATTCTCACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

279

Amino Acids

31.54

Weight (kDa)

6.86

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 80 - 269 5.1e-18 Leucine-rich repeat region
LRR_8 PF13855 90 - 142 1.8e-07 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 198 - 277 4.2e-18 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 769
AciI CCGC 3 cut(s) 172, 582, 816
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 2 cut(s) 140, 824
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 2 cut(s) 338, 720
AflII CTTAAG 2 cut(s) 454, 640
AgsI TTSAA 8 cut(s) 154, 198, 312, 436, 492, 668, 791, 823
AluBI AGCT 3 cut(s) 70, 301, 399
AluI AGCT 3 cut(s) 70, 301, 399
Alw21I GWGCWC 1 cut(s) 798
AlwI GGATC 1 cut(s) 81
AoxI GGCC 2 cut(s) 147, 607
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 2 cut(s) 140, 824
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 2 cut(s) 29, 822
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 122, 695
BfaI CTAG 2 cut(s) 527, 835
BfmI CTRYAG 2 cut(s) 332, 519
BfrI CTTAAG 2 cut(s) 454, 640
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 607
BmsI GCATC 3 cut(s) 337, 625, 661
BpiI GAAGAC 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 726
Bse3DI GCAATG 2 cut(s) 551, 681
BseGI GGATG 1 cut(s) 706
BseMI GCAATG 2 cut(s) 551, 681
BseNI ACTGG 1 cut(s) 726
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 2 cut(s) 149, 609
BsiHKAI GWGCWC 1 cut(s) 798
BslFI GGGAC 1 cut(s) 640
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 2 cut(s) 149, 609
Bsp1286I GDGCHC 1 cut(s) 798
Bsp143I GATC 4 cut(s) 73, 343, 418, 600
BspACI CCGC 3 cut(s) 172, 582, 816
BspANI GGCC 2 cut(s) 149, 609
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 1 cut(s) 81
BspTI CTTAAG 2 cut(s) 454, 640
BsrDI GCAATG 2 cut(s) 551, 681
BsrI ACTGG 1 cut(s) 726
BssMI GATC 4 cut(s) 73, 343, 418, 600
Bst4CI ACNGT 2 cut(s) 336, 767
Bst6I CTCTTC 1 cut(s) 396
BstAFI CTTAAG 2 cut(s) 454, 640
BstC8I GCNNGC 2 cut(s) 501, 519
BstDEI CTNAG 1 cut(s) 464
BstF5I GGATG 1 cut(s) 706
BstKTI GATC 4 cut(s) 76, 346, 421, 603
BstMBI GATC 4 cut(s) 73, 343, 418, 600
BstMWI GCNNNNNNNGC 2 cut(s) 579, 680
BstSFI CTRYAG 2 cut(s) 332, 519
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 149, 609
BtsCI GGATG 1 cut(s) 706
BtsIMutI CAGTG 2 cut(s) 185, 407
Cac8I GCNNGC 2 cut(s) 501, 519
Cfr13I GGNCC 1 cut(s) 607
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 337, 719
CviAII CATG 3 cut(s) 5, 125, 604
CviQI GTAC 2 cut(s) 337, 719
DdeI CTNAG 1 cut(s) 464
DpnI GATC 4 cut(s) 75, 345, 420, 602
DpnII GATC 4 cut(s) 73, 343, 418, 600
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 128, 607
FaiI YATR 8 cut(s) 6, 49, 78, 109, 126, 265, 605, 813
FaqI GGGAC 1 cut(s) 640
FatI CATG 3 cut(s) 4, 124, 603
FauI CCCGC 1 cut(s) 575
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 1 cut(s) 713
Fsp4HI GCNGC 1 cut(s) 299
FspBI CTAG 2 cut(s) 527, 835
GluI GCNGC 1 cut(s) 299
HaeIII GGCC 2 cut(s) 149, 609
HgaI GACGC 1 cut(s) 464
Hin1II CATG 3 cut(s) 8, 128, 607
HinfI GANTC 3 cut(s) 308, 377, 460
HphI GGTGA 2 cut(s) 29, 822
Hpy166II GTNNAC 2 cut(s) 371, 770
Hpy188I TCNGA 4 cut(s) 56, 90, 219, 291
Hpy188III TCNNGA 4 cut(s) 236, 305, 668, 761
Hpy8I GTNNAC 2 cut(s) 371, 770
HpyAV CCTTC 3 cut(s) 160, 430, 797
HpyCH4III ACNGT 2 cut(s) 336, 767
HpyCH4V TGCA 7 cut(s) 4, 298, 503, 521, 556, 616, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 579, 680
HpyF3I CTNAG 1 cut(s) 464
Hsp92II CATG 3 cut(s) 8, 128, 607
Kzo9I GATC 4 cut(s) 73, 343, 418, 600
LpnPI CCDG 7 cut(s) 56, 318, 387, 513, 531, 707, 790
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 3 cut(s) 337, 625, 661
MaeI CTAG 2 cut(s) 527, 835
MaeIII GTNAC 2 cut(s) 229, 731
MalI GATC 4 cut(s) 75, 345, 420, 602
MboI GATC 4 cut(s) 73, 343, 418, 600
MboII GAAGA 3 cut(s) 103, 383, 611
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 798
MluCI AATT 5 cut(s) 140, 312, 469, 487, 824
MnlI CCTC 4 cut(s) 55, 139, 617, 786
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 138, 210, 455, 641, 693
MspCI CTTAAG 2 cut(s) 454, 640
MunI CAATTG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 579, 680
NdeII GATC 4 cut(s) 73, 343, 418, 600
NlaIII CATG 3 cut(s) 8, 128, 607
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 149
PfeI GAWTC 3 cut(s) 308, 377, 460
PkrI GCNGC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 607
PstI CTGCAG 1 cut(s) 523
RsaI GTAC 2 cut(s) 338, 720
RsaNI GTAC 2 cut(s) 337, 719
SaqAI TTAA 5 cut(s) 138, 210, 455, 641, 693
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 4 cut(s) 73, 343, 418, 600
Sau96I GGNCC 1 cut(s) 607
SduI GDGCHC 1 cut(s) 798
SfaNI GCATC 3 cut(s) 337, 625, 661
SfcI CTRYAG 2 cut(s) 332, 519
SmlI CTYRAG 2 cut(s) 454, 640
SmoI CTYRAG 2 cut(s) 454, 640
Sse9I AATT 5 cut(s) 140, 312, 469, 487, 824
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 3 cut(s) 172, 582, 816
SspMI CTAG 2 cut(s) 527, 835
StuI AGGCCT 1 cut(s) 149
TaaI ACNGT 2 cut(s) 336, 767
TaqI TCGA 1 cut(s) 622
TasI AATT 5 cut(s) 140, 312, 469, 487, 824
TatI WGTACW 1 cut(s) 718
TfiI GAWTC 3 cut(s) 308, 377, 460
Tru1I TTAA 5 cut(s) 138, 210, 455, 641, 693
Tru9I TTAA 5 cut(s) 138, 210, 455, 641, 693
TscAI CASTG 2 cut(s) 192, 414
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 4 cut(s) 93, 692, 726, 761
TspRI CASTG 2 cut(s) 192, 414
Vha464I CTTAAG 2 cut(s) 454, 640
XapI RAATTY 2 cut(s) 140, 824
XmiI GTMKAC 1 cut(s) 769
XspI CTAG 2 cut(s) 527, 835
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.