Rmu_sc0018410.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018410.1
OG0000070
Physical Location & Seq
Reverse (-)
2 .. 2967
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018410.1_g000001.1.cds

Sequence Viewer

Length: 2966 bp
atggtgacaacacgtgatgaaaaagttgcagtattaatgggagctcgagccgctggagttcattatttaaatagactatcagatgaatgttgtctacaagtatttgagcagcatgttagcaatgacagaccaccaaattttgacttgcttaagaagaaaattgttacgaactgcaatggattgccattggctgcaaaaactcttggtggtgttttacgttgtaaaggaactgacaagtgggaggaaatactgaatgacaaattatggagtacctcagatgggagtgatatactcccagtactgagattgagttatcattatctcccttcaactttgaagaggtgctttgcttattgctcaatacttcccaatgactacaaatttgagaaaagccaattaatccttctgtggatggcagagggtttccttgagcaaccagaaggggctaaagcaatggaagatatcggtgacgaatattttgaggagctattgtctcggtcattatttcaaaattcgggcaaaaacagttcacattatgtaatgcatgaccttgttggtgatttagcacgatgggctgctggagacacattttgcagattagaggataaaccgcatggtagatgttctccaaagactcgtcatctggcttacatttctggcaagttcgatggggtaaaaaaatttgagacattttctgaagcaaaacgcttgcggactttcctaccacttcctgtttccagtggttatgggaattatctaactcattatgctacttctgatctattgccacagttgaagtacttgcgggtgctctccttaaatggctataaactgacggagctgccagattccgtatgtaatctgagacatctacggtaccttgatctttctcacacattaataatgagtttgcccgagtcaatatgcatgctttacaacttacagacgttaatattagagaactgttcaaaattgaagacactaccttcaaacatgagcaatttatctaatttacgtcatctcaacaattcaaacacgccttcattggaagaaatgcctccccaagtaagtcggttgactcatctgcaaactttgcctaattttgtggtggggaaaggtagtgcatcagggcttggagagatagggtcattgcatcttcgtgggaccataagccttggaagattggaaaatgtgatcgatgttggggatgtgaagaggaccaaaataatgaataaggaacggctggatacattgcaattggaatggagtggcacaagtgagaaggagtcggaggtgctctgcagtttagaacctcagaaaaagcttgtaaagctcaccatcaagggctacaatggtttcgaattttcaaaatggattggacatccttcattctctgatatgacgcatgtgaagttagagaattgtaaaaattgtcgattcttacctcctcttggccaattaccttttctgaaaaaacttcagatacaaggactgtccaatgttaaaagtgtgggtgctgagttttatggagagtgcagcttgccttttccagtgttggaagacctgaggttcgaggatatgcaaaattggaaggagtggcttccttgcaaaacaaatgaagaaattcgagttttcccttgcctgcgactggtttccatctctagatgcccgaaattgaagtgtttgctatccaagagcatggattcattatcagagctgtatattgctgaatgtgaagagttggtggtttcaattgccaattataaacatataagtgtgttggtcataacaggttgtaaaagggtggtgcacagaagtggagttaagtttgagctactggaggatatggagcttcatcgtatttcagagttcagactcgaaatagacgggttcatcagaggattgccaaagcttcaaactttgcggattactggttgtgaagagttgacatgtttatgggagaatgaggatagatggctgcagcgtcgggtttctaatattattggaggcaacatatctgactccccctctcactttattcaagagctaagagcactcaaggaacttgtgctaactggatgctcaaatctaatttcttttccagaagctagctggccaccttgtcttgaatctgtaaagatggagtcgtgtaattctttgatgcattttgtaaggtgtcagataccgccaagcataagaagaattgtgatagaaaaatgtcaaaatttgaaactattagtgaaggatgctgacaaaggaggccgacggctcaaatatctttatttaagtgactgtgaacgattggagtcaataataaaaacattccacgaggacacttgtcttgaagatcttaggatatacaggtgtgcaaatctcaaatccttaccagaggggctatgccatctctccgctcttcgcattttaattatacgcgattgtggaagtctcgtttccttcccaagaggagggttgccatccaacctgatagactttcgtatcgaggattgtgatcaattggaagccctccccagaggcatggacaacctcagctctcttcagactttggtgttgagatactgtggaggtttggcatccattatagaagagggtttcccacccaacctaattaatcttcatattgacaatcgcaaaagctgcaagcctctctcagagcgggggcttcaccaattggacagactcacctctcttaaaaccttgcggatctatggtgtagatccagatctggtgtcctttccgccaaaggaggtgctgctcccaaaatctctcattaaactctccattggaggcttcccaaatctgaagcgcctgtcatcatcttttcaatcactcacctctcttgaatccctttcaatttggggttgtccgaagctagcatctattattccagaaaaagaggatcatctgcctctttcacttacacagcttcgcatccgtgagggctgtcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

989

Amino Acids

112.04

Weight (kDa)

8.17

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1764
Acc65I GGTACC 1 cut(s) 876
AccB1I GGYRCC 1 cut(s) 876
AccBSI CCGCTC 2 cut(s) 2411, 2674
AccI GTMKAC 1 cut(s) 94
AccII CGCG 1 cut(s) 2433
AclWI GGATC 3 cut(s) 2729, 2729, 2925
AcoI YGGCCR 2 cut(s) 1453, 2114
AcsI RAATTY 7 cut(s) 136, 380, 511, 680, 1361, 1623, 2224
AcuI CTGAAG 4 cut(s) 717, 1463, 2540, 2840
AcvI CACGTG 1 cut(s) 14
AfaI GTAC 4 cut(s) 271, 300, 800, 878
AfiI CCNNNNNNNGG 4 cut(s) 279, 1451, 1648, 2465
AflII CTTAAG 1 cut(s) 149
AflIII ACRYGT 2 cut(s) 11, 1949
AjuI GAANNNNNNNTTGG 4 cut(s) 387, 419, 1449, 1481
AleI CACNNNNGTG 1 cut(s) 1815
Alw21I GWGCWC 5 cut(s) 46, 813, 1299, 1812, 2056
Alw26I GTCTC 5 cut(s) 498, 576, 680, 859, 2450
Alw44I GTGCAC 1 cut(s) 1808
AlwI GGATC 3 cut(s) 2729, 2729, 2925
Ama87I CYCGRG 2 cut(s) 45, 914
AoxI GGCC 3 cut(s) 1453, 2114, 2260
ApaLI GTGCAC 1 cut(s) 1808
ApeKI GCWGC 9 cut(s) 109, 191, 575, 841, 1536, 1978, 1981, 2655, 2770
ApoI RAATTY 7 cut(s) 136, 380, 511, 680, 1361, 1623, 2224
ArsI GACNNNNNNTTYG 6 cut(s) 365, 397, 461, 493, 1553, 1585
AseI ATTAAT 4 cut(s) 35, 398, 899, 2628
Asp700I GAANNNNTTC 1 cut(s) 1623
Asp718I GGTACC 1 cut(s) 876
AspLEI GCGC 1 cut(s) 2826
AspS9I GGNCC 2 cut(s) 1164, 1218
AsuHPI GGTGA 7 cut(s) 16, 479, 569, 1327, 2675, 2692, 2842
AsuII TTCGAA 1 cut(s) 1359
AsuNHI GCTAGC 2 cut(s) 2108, 2890
AvaI CYCGRG 2 cut(s) 45, 914
AvaII GGWCC 2 cut(s) 1164, 1218
AxyI CCTNAGG 1 cut(s) 1565
BaeGI GKGCMC 1 cut(s) 1812
BaeI ACNNNNGTAYC 2 cut(s) 2479, 2512
BalI TGGCCA 2 cut(s) 1455, 2116
BanI GGYRCC 1 cut(s) 876
BanII GRGCYC 1 cut(s) 46
BauI CACGAG 1 cut(s) 2327
BbrPI CACGTG 1 cut(s) 14
BbsI GAAGAC 2 cut(s) 983, 1566
Bbv12I GWGCWC 5 cut(s) 46, 813, 1299, 1812, 2056
BbvCI CCTCAGC 1 cut(s) 2546
BbvI GCAGC 9 cut(s) 121, 178, 562, 828, 1548, 1965, 1993, 2642, 2757
BceAI ACGGC 2 cut(s) 1256, 2282
BciVI GTATCC 1 cut(s) 1240
BclI TGATCA 1 cut(s) 2509
BcoDI GTCTC 5 cut(s) 498, 576, 680, 859, 2450
BfaI CTAG 3 cut(s) 1662, 2109, 2891
BfmI CTRYAG 2 cut(s) 1300, 1979
BfoI RGCGCY 1 cut(s) 2827
BfrI CTTAAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 1240
BglII AGATCT 2 cut(s) 2347, 2740
BmcAI AGTACT 2 cut(s) 300, 800
Bme18I GGWCC 2 cut(s) 1164, 1218
BmeT110I CYCGRG 2 cut(s) 45, 914
BmgT120I GGNCC 2 cut(s) 1164, 1218
BmiI GGNNCC 2 cut(s) 878, 1165
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 9 cut(s) 1133, 1162, 1655, 2069, 2151, 2236, 2600, 2903, 2958
BmtI GCTAGC 2 cut(s) 2112, 2894
BmuI ACTGGG 1 cut(s) 290
BoxI GACNNNNGTC 1 cut(s) 2337
BpiI GAAGAC 2 cut(s) 983, 1566
BpmI CTGGAG 3 cut(s) 75, 600, 1859
Bpu10I CCTNAGC 1 cut(s) 2546
Bpu14I TTCGAA 1 cut(s) 1359
BpuEI CTTGAG 2 cut(s) 449, 2042
Bsa29I ATCGAT 1 cut(s) 1197
BsaAI YACGTR 1 cut(s) 14
BsaBI GATNNNNATC 2 cut(s) 2508, 2739
BsaJI CCNNGG 1 cut(s) 1174
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 1451, 1648, 2465
Bse1I ACTGG 7 cut(s) 296, 738, 1550, 1653, 1842, 1936, 2080
Bse21I CCTNAGG 1 cut(s) 1565
Bse3DI GCAATG 5 cut(s) 127, 181, 459, 1148, 1250
Bse8I GATNNNNATC 2 cut(s) 2508, 2739
BseCI ATCGAT 1 cut(s) 1197
BseDI CCNNGG 1 cut(s) 1174
BseGI GGATG 8 cut(s) 417, 1213, 1381, 2084, 2251, 2474, 2591, 2949
BseJI GATNNNNATC 2 cut(s) 2508, 2739
BseLI CCNNNNNNNGG 4 cut(s) 279, 1451, 1648, 2465
BseMI GCAATG 5 cut(s) 127, 181, 459, 1148, 1250
BseMII CTCAG 8 cut(s) 288, 293, 854, 1328, 1509, 1556, 2560, 2682
BseNI ACTGG 7 cut(s) 296, 738, 1550, 1653, 1842, 1936, 2080
BseRI GAGGAG 3 cut(s) 497, 1437, 2478
BseSI GKGCMC 1 cut(s) 1812
BseXI GCAGC 9 cut(s) 121, 178, 562, 828, 1548, 1965, 1993, 2642, 2757
BsgI GTGCAG 1 cut(s) 1555
Bsh1236I CGCG 1 cut(s) 2433
BshFI GGCC 3 cut(s) 1455, 2116, 2262
BshNI GGYRCC 1 cut(s) 876
BshVI ATCGAT 1 cut(s) 1197
BsiHKAI GWGCWC 5 cut(s) 46, 813, 1299, 1812, 2056
BsiHKCI CYCGRG 2 cut(s) 45, 914
BslFI GGGAC 1 cut(s) 1177
BslI CCNNNNNNNGG 4 cut(s) 279, 1451, 1648, 2465
BsmAI GTCTC 5 cut(s) 498, 576, 680, 859, 2450
BsmFI GGGAC 1 cut(s) 1177
BsnI GGCC 3 cut(s) 1455, 2116, 2262
BsoBI CYCGRG 2 cut(s) 45, 914
Bsp119I TTCGAA 1 cut(s) 1359
Bsp1286I GDGCHC 5 cut(s) 46, 813, 1299, 1812, 2056
Bsp143I GATC 9 cut(s) 778, 883, 1194, 2347, 2509, 2721, 2734, 2740, 2917
BspANI GGCC 3 cut(s) 1455, 2116, 2262
BspCNI CTCAG 8 cut(s) 287, 294, 855, 1327, 1510, 1557, 2559, 2681
BspDI ATCGAT 1 cut(s) 1197
BspFNI CGCG 1 cut(s) 2433
BspLI GGNNCC 2 cut(s) 878, 1165
BspMAI CTGCAG 2 cut(s) 1304, 1983
BspOI GCTAGC 2 cut(s) 2112, 2894
BspPI GGATC 3 cut(s) 2729, 2729, 2925
BspQI GCTCTTC 1 cut(s) 2418
BspT104I TTCGAA 1 cut(s) 1359
BspT107I GGYRCC 1 cut(s) 876
BspTI CTTAAG 1 cut(s) 149
BsrBI CCGCTC 2 cut(s) 2411, 2674
BsrDI GCAATG 5 cut(s) 127, 181, 459, 1148, 1250
BsrI ACTGG 7 cut(s) 296, 738, 1550, 1653, 1842, 1936, 2080
BssECI CCNNGG 1 cut(s) 1174
BssMI GATC 9 cut(s) 778, 883, 1194, 2347, 2509, 2721, 2734, 2740, 2917
BssSI CACGAG 1 cut(s) 2327
BssT1I CCWWGG 1 cut(s) 1174
Bst2BI CACGAG 1 cut(s) 2327
Bst4CI ACNGT 7 cut(s) 527, 792, 876, 965, 1494, 2294, 2579
Bst6I CTCTTC 7 cut(s) 332, 1208, 1731, 1935, 2418, 2559, 2598
BstAFI CTTAAG 1 cut(s) 149
BstAPI GCANNNNNTGC 2 cut(s) 1093, 2655
BstBAI YACGTR 1 cut(s) 14
BstBI TTCGAA 1 cut(s) 1359
BstC8I GCNNGC 8 cut(s) 710, 929, 1541, 1643, 2110, 2114, 2660, 2892
BstF5I GGATG 8 cut(s) 417, 1213, 1381, 2084, 2251, 2474, 2591, 2949
BstFNI CGCG 1 cut(s) 2433
BstH2I RGCGCY 1 cut(s) 2827
BstHHI GCGC 1 cut(s) 2826
BstKTI GATC 9 cut(s) 781, 886, 1197, 2350, 2512, 2724, 2737, 2743, 2920
BstMAI GTCTC 5 cut(s) 498, 576, 680, 859, 2450
BstMBI GATC 9 cut(s) 778, 883, 1194, 2347, 2509, 2721, 2734, 2740, 2917
BstMWI GCNNNNNNNGC 5 cut(s) 50, 572, 1093, 1330, 2655
BstNSI RCATGY 4 cut(s) 116, 931, 1409, 1953
BstPAI GACNNNNGTC 1 cut(s) 2337
BstSFI CTRYAG 2 cut(s) 1300, 1979
BstSLI GKGCMC 1 cut(s) 1812
BstUI CGCG 1 cut(s) 2433
BstV1I GCAGC 9 cut(s) 121, 178, 562, 828, 1548, 1965, 1993, 2642, 2757
BstV2I GAAGAC 2 cut(s) 983, 1566
BstX2I RGATCY 4 cut(s) 2347, 2721, 2734, 2740
BstXI CCANNNNNNTGG 2 cut(s) 1699, 2536
BstYI RGATCY 4 cut(s) 2347, 2721, 2734, 2740
Bsu15I ATCGAT 1 cut(s) 1197
Bsu36I CCTNAGG 1 cut(s) 1565
BsuI GTATCC 1 cut(s) 1240
BsuRI GGCC 3 cut(s) 1455, 2116, 2262
BsuTUI ATCGAT 1 cut(s) 1197
BtsCI GGATG 8 cut(s) 417, 1213, 1381, 2084, 2251, 2474, 2591, 2949
BtsIMutI CAGTG 2 cut(s) 745, 1557
Cac8I GCNNGC 8 cut(s) 710, 929, 1541, 1643, 2110, 2114, 2660, 2892
CfoI GCGC 1 cut(s) 2826
Cfr13I GGNCC 2 cut(s) 1164, 1218
ClaI ATCGAT 1 cut(s) 1197
CseI GACGC 2 cut(s) 1411, 1973
Csp6I GTAC 4 cut(s) 270, 299, 799, 877
CviAII CATG 9 cut(s) 113, 545, 614, 928, 994, 1406, 1699, 1950, 2536
CviQI GTAC 4 cut(s) 270, 299, 799, 877
DpnI GATC 9 cut(s) 780, 885, 1196, 2349, 2511, 2723, 2736, 2742, 2919
DpnII GATC 9 cut(s) 778, 883, 1194, 2347, 2509, 2721, 2734, 2740, 2917
DraI TTTAAA 1 cut(s) 69
EaeI YGGCCR 2 cut(s) 1453, 2114
Eam1104I CTCTTC 7 cut(s) 332, 1208, 1731, 1935, 2418, 2559, 2598
EarI CTCTTC 7 cut(s) 332, 1208, 1731, 1935, 2418, 2559, 2598
EciI GGCGGA 1 cut(s) 2745
Ecl136II GAGCTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 1174
Eco24I GRGCYC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 1164, 1218
Eco53kI GAGCTC 1 cut(s) 44
Eco57I CTGAAG 4 cut(s) 717, 1463, 2540, 2840
Eco72I CACGTG 1 cut(s) 14
Eco81I CCTNAGG 1 cut(s) 1565
Eco88I CYCGRG 2 cut(s) 45, 914
EcoICRI GAGCTC 1 cut(s) 44
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 1174
EcoT22I ATGCAT 3 cut(s) 546, 929, 2166
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 1174
FaeI CATG 9 cut(s) 116, 548, 617, 931, 997, 1409, 1702, 1953, 2539
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 1177
FatI CATG 9 cut(s) 112, 544, 613, 927, 993, 1405, 1698, 1949, 2535
FauI CCCGC 2 cut(s) 798, 2667
FbaI TGATCA 1 cut(s) 2509
FblI GTMKAC 1 cut(s) 94
FokI GGATG 8 cut(s) 424, 1220, 1368, 2091, 2258, 2461, 2578, 2936
FriOI GRGCYC 1 cut(s) 46
FspBI CTAG 3 cut(s) 1662, 2109, 2891
GlaI GCGC 1 cut(s) 2825
GsuI CTGGAG 3 cut(s) 75, 600, 1859
HaeII RGCGCY 1 cut(s) 2827
HaeIII GGCC 3 cut(s) 1455, 2116, 2262
HgaI GACGC 2 cut(s) 1411, 1973
HhaI GCGC 1 cut(s) 2826
Hin1II CATG 9 cut(s) 116, 548, 617, 931, 997, 1409, 1702, 1953, 2539
Hin6I GCGC 1 cut(s) 2824
HinP1I GCGC 1 cut(s) 2824
HincII GTYRAC 2 cut(s) 1077, 1947
HindII GTYRAC 2 cut(s) 1077, 1947
HindIII AAGCTT 2 cut(s) 1322, 1910
HphI GGTGA 7 cut(s) 16, 479, 569, 1327, 2675, 2692, 2842
Hpy166II GTNNAC 6 cut(s) 95, 530, 1077, 1810, 1947, 2297
Hpy188III TCNNGA 8 cut(s) 1662, 2042, 2102, 2126, 2342, 2738, 2858, 2906
Hpy8I GTNNAC 6 cut(s) 95, 530, 1077, 1810, 1947, 2297
Hpy99I CGWCG 2 cut(s) 1989, 2268
HpyCH4III ACNGT 7 cut(s) 527, 792, 876, 965, 1494, 2294, 2579
HpyCH4IV ACGT 4 cut(s) 13, 217, 947, 1015
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 572, 1093, 1330, 2655
HpySE526I ACGT 4 cut(s) 13, 217, 947, 1015
Hsp92II CATG 9 cut(s) 116, 548, 617, 931, 997, 1409, 1702, 1953, 2539
HspAI GCGC 1 cut(s) 2824
KpnI GGTACC 1 cut(s) 880
Ksp22I TGATCA 1 cut(s) 2509
Kzo9I GATC 9 cut(s) 778, 883, 1194, 2347, 2509, 2721, 2734, 2740, 2917
LguI GCTCTTC 1 cut(s) 2418
LmnI GCTCC 5 cut(s) 41, 484, 838, 1849, 2778
Lsp1109I GCAGC 9 cut(s) 121, 178, 562, 828, 1548, 1965, 1993, 2642, 2757
LweI GCATC 9 cut(s) 1133, 1162, 1655, 2069, 2151, 2236, 2600, 2903, 2958
MaeI CTAG 3 cut(s) 1662, 2109, 2891
MaeII ACGT 4 cut(s) 13, 217, 947, 1015
MaeIII GTNAC 4 cut(s) 4, 163, 467, 2288
MalI GATC 9 cut(s) 780, 885, 1196, 2349, 2511, 2723, 2736, 2742, 2919
MbiI CCGCTC 2 cut(s) 2411, 2674
MboI GATC 9 cut(s) 778, 883, 1194, 2347, 2509, 2721, 2734, 2740, 2917
MfeI CAATTG 4 cut(s) 1256, 1752, 2513, 2687
MflI RGATCY 4 cut(s) 2347, 2721, 2734, 2740
MhlI GDGCHC 5 cut(s) 46, 813, 1299, 1812, 2056
MlsI TGGCCA 2 cut(s) 1455, 2116
MluNI TGGCCA 2 cut(s) 1455, 2116
MlyI GAGTC 9 cut(s) 628, 926, 1072, 1295, 1869, 2015, 2153, 2315, 2691
MmeI TCCRAC 3 cut(s) 1269, 1536, 2502
Mox20I TGGCCA 2 cut(s) 1455, 2116
Mph1103I ATGCAT 3 cut(s) 546, 929, 2166
MroXI GAANNNNTTC 1 cut(s) 1623
MscI TGGCCA 2 cut(s) 1455, 2116
MslI CAYNNNNRTG 4 cut(s) 1158, 1773, 1815, 1954
Msp20I TGGCCA 2 cut(s) 1455, 2116
MspA1I CMGCKG 1 cut(s) 53
MspCI CTTAAG 1 cut(s) 149
MunI CAATTG 4 cut(s) 1256, 1752, 2513, 2687
MvnI CGCG 1 cut(s) 2433
MwoI GCNNNNNNNGC 5 cut(s) 50, 572, 1093, 1330, 2655
NdeII GATC 9 cut(s) 778, 883, 1194, 2347, 2509, 2721, 2734, 2740, 2917
NheI GCTAGC 2 cut(s) 2108, 2890
NlaIII CATG 9 cut(s) 116, 548, 617, 931, 997, 1409, 1702, 1953, 2539
NlaIV GGNNCC 2 cut(s) 878, 1165
NmuCI GTSAC 3 cut(s) 4, 467, 2288
NsiI ATGCAT 3 cut(s) 546, 929, 2166
NspI RCATGY 4 cut(s) 116, 931, 1409, 1953
NspV TTCGAA 1 cut(s) 1359
OliI CACNNNNGTG 1 cut(s) 1815
PaeI GCATGC 1 cut(s) 931
PaeR7I CTCGAG 1 cut(s) 45
PciI ACATGT 1 cut(s) 1949
PciSI GCTCTTC 1 cut(s) 2418
PdmI GAANNNNTTC 1 cut(s) 1623
PfeI GAWTC 5 cut(s) 848, 1437, 1703, 2129, 2861
PleI GAGTC 9 cut(s) 628, 925, 1072, 1294, 1869, 2015, 2152, 2314, 2691
PmaCI CACGTG 1 cut(s) 14
PmlI CACGTG 1 cut(s) 14
PpsI GAGTC 9 cut(s) 628, 925, 1072, 1294, 1869, 2015, 2152, 2314, 2691
Ppu21I YACGTR 1 cut(s) 14
PscI ACATGT 1 cut(s) 1949
PshAI GACNNNNGTC 1 cut(s) 2337
PshBI ATTAAT 4 cut(s) 35, 398, 899, 2628
PsiI TTATAA 1 cut(s) 1764
Psp124BI GAGCTC 1 cut(s) 46
PspCI CACGTG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 878, 1165
PspPI GGNCC 2 cut(s) 1164, 1218
PspXI VCTCGAGB 1 cut(s) 45
PstI CTGCAG 2 cut(s) 1304, 1983
PsuI RGATCY 4 cut(s) 2347, 2721, 2734, 2740
RsaI GTAC 4 cut(s) 271, 300, 800, 878
RsaNI GTAC 4 cut(s) 270, 299, 799, 877
RseI CAYNNNNRTG 4 cut(s) 1158, 1773, 1815, 1954
SacI GAGCTC 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 2418
Sau3AI GATC 9 cut(s) 778, 883, 1194, 2347, 2509, 2721, 2734, 2740, 2917
Sau96I GGNCC 2 cut(s) 1164, 1218
ScaI AGTACT 2 cut(s) 300, 800
SchI GAGTC 9 cut(s) 628, 926, 1072, 1295, 1869, 2015, 2153, 2315, 2691
SduI GDGCHC 5 cut(s) 46, 813, 1299, 1812, 2056
SfaNI GCATC 9 cut(s) 1133, 1162, 1655, 2069, 2151, 2236, 2600, 2903, 2958
SfcI CTRYAG 2 cut(s) 1300, 1979
Sfr274I CTCGAG 1 cut(s) 45
SfuI TTCGAA 1 cut(s) 1359
SinI GGWCC 2 cut(s) 1164, 1218
SlaI CTCGAG 1 cut(s) 45
SmiI ATTTAAAT 1 cut(s) 69
SmiMI CAYNNNNRTG 4 cut(s) 1158, 1773, 1815, 1954
SmlI CTYRAG 4 cut(s) 45, 149, 428, 2057
SmoI CTYRAG 4 cut(s) 45, 149, 428, 2057
SphI GCATGC 1 cut(s) 931
SspI AATATT 3 cut(s) 476, 954, 1999
SspMI CTAG 3 cut(s) 1662, 2109, 2891
SstI GAGCTC 1 cut(s) 46
StyI CCWWGG 1 cut(s) 1174
SwaI ATTTAAAT 1 cut(s) 69
TaaI ACNGT 7 cut(s) 527, 792, 876, 965, 1494, 2294, 2579
TaiI ACGT 4 cut(s) 16, 220, 950, 1018
TaqI TCGA 9 cut(s) 46, 666, 1197, 1359, 1435, 1572, 1627, 1878, 2499
TaqII GACCGA 1 cut(s) 486
TatI WGTACW 2 cut(s) 298, 798
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 5 cut(s) 848, 1437, 1703, 2129, 2861
TscAI CASTG 2 cut(s) 745, 1557
TseFI GTSAC 3 cut(s) 4, 467, 2288
TseI GCWGC 9 cut(s) 109, 191, 575, 841, 1536, 1978, 1981, 2655, 2770
Tsp45I GTSAC 3 cut(s) 4, 467, 2288
TspGWI ACGGA 3 cut(s) 841, 851, 2942
TspRI CASTG 2 cut(s) 745, 1557
Vha464I CTTAAG 1 cut(s) 149
VneI GTGCAC 1 cut(s) 1808
VpaK11BI GGWCC 2 cut(s) 1164, 1218
VspI ATTAAT 4 cut(s) 35, 398, 899, 2628
XapI RAATTY 7 cut(s) 136, 380, 511, 680, 1361, 1623, 2224
XbaI TCTAGA 1 cut(s) 1661
XceI RCATGY 4 cut(s) 116, 931, 1409, 1953
XcmI CCANNNNNNNNNTGG 1 cut(s) 2109
XhoI CTCGAG 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 1623
XspI CTAG 3 cut(s) 1662, 2109, 2891
ZrmI AGTACT 2 cut(s) 300, 800
Zsp2I ATGCAT 3 cut(s) 546, 929, 2166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.