Rmu_sc0002341.1_g000005

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002341.1
Physical Location & Seq
Forward (+)
10602 .. 11216
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002341.1_g000005.1.cds

Sequence Viewer

Length: 615 bp
atgaactccgaaatagagaagattgatagtcgtttgcaagaaatatttcaacggaaagagcagctctgtttgaggatacctcgacttcaacatcctcatcgcaaaggacaccaagttcgtttgtgttggatggatgttgttgggagagatgaagacacaagaaaaatagtggaattgttgtggagagatgttgatccttcttccgccaccaaatatcaagttgttgccattgttggtatgggacgactgggcaagacaacgcttgtaggacaagttttcaatgatgtagctgcaatggaacagtttgatctcaagatctgggtttcaatatccgatgactttgatcttcaaacggtgacgagaactatttctaaggaagtcacatctcggccatgtgatatggatgagttcagtcgacttcaacataatctgagcaaggagatcgatggtaaaaggtttttaatggttttagatgatgtctggagcgcgggtgattatgtttcatggacaaaactgcaagctcccttccgtggcggggctaagggaagtgaggtaatggtgacaaccagtgatgaaaaagttgccgcattgatcgatgggagccctagccgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

23.3

Weight (kDa)

6.11

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 415
AccII CGCG 1 cut(s) 488
AciI CCGC 5 cut(s) 204, 488, 534, 585, 610
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 530, 535
AgsI TTSAA 6 cut(s) 50, 89, 280, 327, 350, 422
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 3 cut(s) 64, 290, 521
AluI AGCT 3 cut(s) 64, 290, 521
AlwI GGATC 1 cut(s) 188
AoxI GGCC 1 cut(s) 389
ApeKI GCWGC 2 cut(s) 61, 290
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
Asp700I GAANNNNTTC 2 cut(s) 45, 367
AspLEI GCGC 1 cut(s) 488
AsuHPI GGTGA 3 cut(s) 367, 503, 571
BanII GRGCYC 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 73, 277
BccI CCATC 3 cut(s) 124, 440, 590
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciVI GTATCC 1 cut(s) 69
BfaI CTAG 1 cut(s) 606
BfuI GTATCC 1 cut(s) 69
BglII AGATCT 1 cut(s) 315
BisI GCNGC 4 cut(s) 62, 291, 585, 610
BlsI GCNGC 4 cut(s) 63, 292, 586, 611
BmiI GGNNCC 1 cut(s) 602
BmrI ACTGGG 1 cut(s) 257
BmuI ACTGGG 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 296
Bsa29I ATCGAT 2 cut(s) 444, 594
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 529
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 530, 535
Bse1I ACTGG 2 cut(s) 252, 567
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 192
BseCI ATCGAT 2 cut(s) 444, 594
BseDI CCNNGG 1 cut(s) 529
BseGI GGATG 4 cut(s) 91, 135, 139, 409
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 530, 535
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 2 cut(s) 252, 567
BseXI GCAGC 2 cut(s) 73, 277
Bsh1236I CGCG 1 cut(s) 488
BshFI GGCC 1 cut(s) 391
BshVI ATCGAT 2 cut(s) 444, 594
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 530, 535
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 605
Bsp143I GATC 6 cut(s) 193, 307, 315, 343, 441, 591
BspACI CCGC 5 cut(s) 204, 488, 534, 585, 610
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 423
BspDI ATCGAT 2 cut(s) 444, 594
BspFNI CGCG 1 cut(s) 488
BspLI GGNNCC 1 cut(s) 602
BspPI GGATC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 2 cut(s) 252, 567
BssECI CCNNGG 1 cut(s) 529
BssMI GATC 6 cut(s) 193, 307, 315, 343, 441, 591
Bst4CI ACNGT 2 cut(s) 303, 355
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 3 cut(s) 372, 431, 540
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 4 cut(s) 91, 135, 139, 409
BstFNI CGCG 1 cut(s) 488
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 6 cut(s) 196, 310, 318, 346, 444, 594
BstMBI GATC 6 cut(s) 193, 307, 315, 343, 441, 591
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstUI CGCG 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 73, 277
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
Bsu15I ATCGAT 2 cut(s) 444, 594
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 391
BsuTUI ATCGAT 2 cut(s) 444, 594
BtgI CCRYGG 1 cut(s) 529
BtgZI GCGATG 1 cut(s) 83
BtsCI GGATG 4 cut(s) 91, 135, 139, 409
BtsIMutI CAGTG 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 1 cut(s) 488
ClaI ATCGAT 2 cut(s) 444, 594
CviAII CATG 2 cut(s) 393, 504
CviJI RGCY 7 cut(s) 64, 290, 391, 521, 539, 603, 609
CviKI_1 RGCY 7 cut(s) 64, 290, 391, 521, 539, 603, 609
DdeI CTNAG 3 cut(s) 372, 431, 540
DpnI GATC 6 cut(s) 195, 309, 317, 345, 443, 593
DpnII GATC 6 cut(s) 193, 307, 315, 343, 441, 591
EaeI YGGCCR 1 cut(s) 389
EciI GGCGGA 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 605
FaeI CATG 2 cut(s) 396, 507
FaiI YATR 6 cut(s) 239, 394, 401, 426, 498, 505
FaqI GGGAC 1 cut(s) 255
FatI CATG 2 cut(s) 392, 503
FauI CCCGC 2 cut(s) 481, 527
FblI GTMKAC 1 cut(s) 415
Fnu4HI GCNGC 4 cut(s) 62, 291, 585, 610
FokI GGATG 4 cut(s) 78, 142, 146, 416
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 4 cut(s) 62, 291, 585, 610
FspBI CTAG 1 cut(s) 606
GlaI GCGC 1 cut(s) 487
GluI GCNGC 4 cut(s) 62, 291, 585, 610
GsuI CTGGAG 1 cut(s) 502
HaeIII GGCC 1 cut(s) 391
HhaI GCGC 1 cut(s) 488
Hin1II CATG 2 cut(s) 396, 507
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HincII GTYRAC 1 cut(s) 416
HindII GTYRAC 1 cut(s) 416
HphI GGTGA 3 cut(s) 367, 503, 571
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 3 cut(s) 10, 334, 432
Hpy188III TCNNGA 2 cut(s) 313, 481
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 207, 535
HpyCH4III ACNGT 2 cut(s) 303, 355
HpyCH4V TGCA 3 cut(s) 37, 293, 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
HpyF3I CTNAG 3 cut(s) 372, 431, 540
Hsp92II CATG 2 cut(s) 396, 507
HspAI GCGC 1 cut(s) 486
Kzo9I GATC 6 cut(s) 193, 307, 315, 343, 441, 591
LmnI GCTCC 3 cut(s) 483, 526, 600
LpnPI CCDG 4 cut(s) 233, 304, 466, 580
Lsp1109I GCAGC 2 cut(s) 73, 277
MaeI CTAG 1 cut(s) 606
MaeIII GTNAC 3 cut(s) 355, 379, 559
MalI GATC 6 cut(s) 195, 309, 317, 345, 443, 593
MboI GATC 6 cut(s) 193, 307, 315, 343, 441, 591
MboII GAAGA 4 cut(s) 31, 164, 192, 338
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 605
MluCI AATT 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 4 cut(s) 66, 90, 105, 544
MroXI GAANNNNTTC 2 cut(s) 45, 367
MseI TTAA 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 612
MvnI CGCG 1 cut(s) 488
MwoI GCNNNNNNNGC 1 cut(s) 609
NdeII GATC 6 cut(s) 193, 307, 315, 343, 441, 591
NlaIII CATG 2 cut(s) 396, 507
NlaIV GGNNCC 1 cut(s) 602
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 3 cut(s) 355, 379, 559
PdmI GAANNNNTTC 2 cut(s) 45, 367
PkrI GCNGC 4 cut(s) 63, 292, 586, 611
PspN4I GGNNCC 1 cut(s) 602
PsuI RGATCY 1 cut(s) 315
SalI GTCGAC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 4 cut(s) 62, 291, 585, 610
Sau3AI GATC 6 cut(s) 193, 307, 315, 343, 441, 591
SduI GDGCHC 1 cut(s) 605
SetI ASST 6 cut(s) 66, 82, 292, 458, 523, 555
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 173
SsiI CCGC 5 cut(s) 204, 488, 534, 585, 610
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 303, 355
TaqI TCGA 4 cut(s) 82, 415, 444, 594
TasI AATT 1 cut(s) 173
TauI GCSGC 2 cut(s) 587, 612
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 3 cut(s) 355, 379, 559
TseI GCWGC 2 cut(s) 61, 290
Tsp45I GTSAC 3 cut(s) 355, 379, 559
TspDTI ATGAA 4 cut(s) 17, 165, 492, 588
TspGWI ACGGA 2 cut(s) 67, 518
TspRI CASTG 1 cut(s) 574
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 415
XmnI GAANNNNTTC 2 cut(s) 45, 367
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.