Rh1DG383500

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
60424696 .. 60431002
6307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG383500.1

Sequence Viewer

Length: 1614 bp
ATGGGAGAGGCTGTTCTTGCGGCATTTCTCTCGGTGCTGCTTGAGAAGTTGGCGGATCGCGAGGTCATTGAGTACTTCGGACACCTTAAGGGGGTCGACAAAAAGGTGCTGGAGAAATGGAGAAGAACGTTGACTGCAATTGACGCGGTGCTGAGTGATGCGGAGGAGAAGCAACTAACACAAAGAGCAGTGAAACTATGGCTAGATGATCTCAGTGATTTGGCTTACGATGTTCAAGACATATTGGACATATTTGATACTAAATTGCTGAAGCGAAGGATAGAAAGACAACAAGGAAGCACAAGTAATTCATGGATCAGCTACCTCTCTAAACCCAAGTTCAATTTTAGTGTGAACTCAAAAATCAAGAAGATAAGTGATAAACTAGAAGAGATAACTACTCTAGAAAAGCAGTTTGGTCTGAAGAAACTTGGATTGTCTACCAAGCCATGGAAAATGCCACAAACTACTTCTCAACTAGATGGACCTGTGATCGGAAGGGATGAAGCAAAAGCACTTATTGTTGATAAATTGCTGTCAAAAGAAGAGCATAGTACCAGCAGTTTTCAGAATTATCAAGTAGTTGCCATTGTTGGTACGCCTGGAATAGGAAAGACAACACTCGCAAAACATATATTCAACGATACTGCAACTGCACAGTTTTACCCTAAGGGATGGGTGTCTGTGTCTGACGATTTTGACCTTGTGAGGGTGACAACAGCAATTCTTGAATCAGTCACGTCAGCTCATGTTGAGGATTTCAAGCAGCTTAATTCAATTCAGGAGAAGTTAAGTAAGGAATTGGCTAGCAAGAAGTTTTTAATTGTTCTAGATGATGTCTGGCATACATGTCACTATGATCAATGGACAACACTGCAGTCTGCCTTTCGTGCTGGAGCAGCAGGAAAGCTCCTCGATCTAGTGGTTTCCAGGTCTGCTTATGCTCAAAACTGTAGAGCACATCCTTTTCCTCCTCCACAGAATATGATATTTGGATTCTCAATTCCAGCCTTTCCATTTTGTATTGTGGAATGTAGGTTGATATTGCGGACTTCAATGGTAGATTTTTGGCTCGGTGCAAATCCCATGATATTAGTCATTACTAAGGTTGATTTACTTGCCAAGGGGACTGATTTTAATTGTATTGGTGATTGGGTTGTGGAGGCCACCGTAAAGAAGAAGCTTAATGTTATGAGTGTTCATCTGACGAGTTCAAAGTCTTTGGTTGGAGTAGCTGGAGTTGCATTAGAGATTCAAAAGAAGAAGTTTATATTGCATTTTTCTGTAAGGCTACGCAAATGTTGGGAAATAAGCTTTTATGAGTGCTTTACTGATACTGTGACACCAGAACTGATGGCAGAAAAGGATCCAGTTGCTGCATCAGCGCAAAAGTACAAACCAATACAATCTGCTGTTCCTGGAACTTCCTTGGGTCCAATTCAAATCAATGCTTTCTTAGGAGGAGGGAAATTATATGACACACCTGGAGTTCATCTCCACCATAGGCAAGCAGCAGTGGTTCATTCAGAGACCTACCTTCCCTTGCTCCTCAAAGTCGGCTTAGGGGTCAATCTTATTAATACATTTGCTTCATATATAGTACCAAGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

59.97

Weight (kDa)

8.87

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 99 2.5e-20 Rx N-terminal domain
nSTAND3 PF20720 189 - 283 8.2e-06 Novel STAND NTPase 3
NB-ARC PF00931 190 - 297 5.6e-22 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 450
AccI GTMKAC 2 cut(s) 96, 440
AccII CGCG 2 cut(s) 60, 146
AciI CCGC 5 cut(s) 20, 53, 146, 161, 1048
AclI AACGTT 1 cut(s) 128
AclWI GGATC 4 cut(s) 63, 323, 1361, 1374
AcuI CTGAAG 2 cut(s) 290, 443
AfaI GTAC 5 cut(s) 74, 556, 598, 1394, 1602
AfiI CCNNNNNNNGG 5 cut(s) 91, 450, 494, 608, 709
AflII CTTAAG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 848
AjiI CACGTC 1 cut(s) 741
AjnI CCWGG 4 cut(s) 601, 929, 1417, 1483
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 7 cut(s) 321, 746, 769, 910, 1183, 1235, 1314
AluI AGCT 7 cut(s) 321, 746, 769, 910, 1183, 1235, 1314
Alw21I GWGCWC 1 cut(s) 961
Alw26I GTCTC 1 cut(s) 1523
AlwI GGATC 4 cut(s) 63, 323, 1361, 1374
AlwNI CAGNNNCTG 1 cut(s) 1376
AoxI GGCC 1 cut(s) 1164
ApeKI GCWGC 5 cut(s) 37, 766, 899, 1376, 1511
AseI ATTAAT 1 cut(s) 1578
AspLEI GCGC 1 cut(s) 1387
AspS9I GGNCC 2 cut(s) 485, 1433
AsuHPI GGTGA 2 cut(s) 724, 1160
AsuNHI GCTAGC 1 cut(s) 806
AvaII GGWCC 2 cut(s) 485, 1433
AxyI CCTNAGG 1 cut(s) 669
BamHI GGATCC 1 cut(s) 1366
Bbv12I GWGCWC 1 cut(s) 961
BbvI GCAGC 5 cut(s) 24, 778, 911, 1363, 1523
BccI CCATC 3 cut(s) 476, 669, 1348
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BciT130I CCWGG 4 cut(s) 603, 931, 1419, 1485
BclI TGATCA 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 1523
BfaI CTAG 7 cut(s) 203, 386, 404, 479, 807, 830, 920
BfmI CTRYAG 2 cut(s) 875, 952
BfrI CTTAAG 1 cut(s) 86
BisI GCNGC 6 cut(s) 21, 38, 767, 900, 1377, 1512
BlsI GCNGC 6 cut(s) 22, 39, 768, 901, 1378, 1513
BmcAI AGTACT 1 cut(s) 74
Bme1390I CCNGG 4 cut(s) 603, 931, 1419, 1485
Bme18I GGWCC 2 cut(s) 485, 1433
BmgBI CACGTC 1 cut(s) 741
BmgT120I GGNCC 2 cut(s) 485, 1433
BmiI GGNNCC 2 cut(s) 1368, 1434
BmrFI CCNGG 4 cut(s) 603, 931, 1419, 1485
BmsI GCATC 2 cut(s) 148, 1388
BmtI GCTAGC 1 cut(s) 810
BplI GAGNNNNNCTC 2 cut(s) 1479, 1511
BpmI CTGGAG 4 cut(s) 131, 915, 1257, 1506
Bpu10I CCTNAGC 1 cut(s) 1561
BpuEI CTTGAG 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 1523
BsaJI CCNNGG 3 cut(s) 449, 1122, 1428
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 5 cut(s) 91, 450, 494, 608, 709
Bse1I ACTGG 1 cut(s) 1370
Bse21I CCTNAGG 1 cut(s) 669
BseBI CCWGG 4 cut(s) 603, 931, 1419, 1485
BseDI CCNNGG 3 cut(s) 449, 1122, 1428
BseGI GGATG 3 cut(s) 508, 680, 961
BseLI CCNNNNNNNGG 5 cut(s) 91, 450, 494, 608, 709
BseMII CTCAG 2 cut(s) 143, 226
BseNI ACTGG 1 cut(s) 1370
BseRI GAGGAG 5 cut(s) 179, 902, 963, 1476, 1538
BseXI GCAGC 5 cut(s) 24, 778, 911, 1363, 1523
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 2 cut(s) 60, 146
BshFI GGCC 1 cut(s) 1166
BsiHKAI GWGCWC 1 cut(s) 961
BslFI GGGAC 1 cut(s) 1141
BslI CCNNNNNNNGG 5 cut(s) 91, 450, 494, 608, 709
BsmAI GTCTC 1 cut(s) 1523
BsmFI GGGAC 1 cut(s) 1141
BsnI GGCC 1 cut(s) 1166
Bso31I GGTCTC 1 cut(s) 1523
Bsp1286I GDGCHC 1 cut(s) 961
Bsp143I GATC 7 cut(s) 55, 208, 315, 492, 859, 916, 1366
Bsp19I CCATGG 1 cut(s) 449
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 5 cut(s) 20, 53, 146, 161, 1048
BspANI GGCC 1 cut(s) 1166
BspCNI CTCAG 2 cut(s) 144, 225
BspFNI CGCG 2 cut(s) 60, 146
BspLI GGNNCC 2 cut(s) 1368, 1434
BspMAI CTGCAG 1 cut(s) 879
BspOI GCTAGC 1 cut(s) 810
BspPI GGATC 4 cut(s) 63, 323, 1361, 1374
BspQI GCTCTTC 1 cut(s) 540
BspTI CTTAAG 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 1523
BsrI ACTGG 1 cut(s) 1370
BssECI CCNNGG 3 cut(s) 449, 1122, 1428
BssMI GATC 7 cut(s) 55, 208, 315, 492, 859, 916, 1366
BssT1I CCWWGG 3 cut(s) 449, 1122, 1428
Bst2UI CCWGG 4 cut(s) 603, 931, 1419, 1485
Bst4CI ACNGT 4 cut(s) 660, 953, 1171, 1339
Bst6I CTCTTC 2 cut(s) 384, 540
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 808, 1509
BstDEI CTNAG 6 cut(s) 152, 212, 669, 1104, 1456, 1561
BstDSI CCRYGG 1 cut(s) 449
BstENI CCTNNNNNAGG 1 cut(s) 606
BstF5I GGATG 3 cut(s) 508, 680, 961
BstFNI CGCG 2 cut(s) 60, 146
BstHHI GCGC 1 cut(s) 1387
BstKTI GATC 7 cut(s) 58, 211, 318, 495, 862, 919, 1369
BstMAI GTCTC 1 cut(s) 1523
BstMBI GATC 7 cut(s) 55, 208, 315, 492, 859, 916, 1366
BstMWI GCNNNNNNNGC 6 cut(s) 17, 143, 890, 899, 1241, 1382
BstNI CCWGG 4 cut(s) 603, 931, 1419, 1485
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 4 cut(s) 601, 929, 1417, 1483
BstSFI CTRYAG 2 cut(s) 875, 952
BstUI CGCG 2 cut(s) 60, 146
BstV1I GCAGC 5 cut(s) 24, 778, 911, 1363, 1523
BstX2I RGATCY 1 cut(s) 1366
BstYI RGATCY 1 cut(s) 1366
Bsu36I CCTNAGG 1 cut(s) 669
BsuRI GGCC 1 cut(s) 1166
BtgI CCRYGG 1 cut(s) 449
BtrI CACGTC 1 cut(s) 741
BtsCI GGATG 3 cut(s) 508, 680, 961
BtsI GCAGTG 3 cut(s) 195, 872, 1521
BtsIMutI CAGTG 4 cut(s) 195, 220, 872, 1521
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 808, 1509
CaiI CAGNNNCTG 1 cut(s) 1376
CfoI GCGC 1 cut(s) 1387
Cfr13I GGNCC 2 cut(s) 485, 1433
CseI GACGC 1 cut(s) 152
Csp6I GTAC 5 cut(s) 73, 555, 597, 1393, 1601
CviAII CATG 5 cut(s) 312, 450, 749, 849, 1087
CviQI GTAC 5 cut(s) 73, 555, 597, 1393, 1601
DdeI CTNAG 6 cut(s) 152, 212, 669, 1104, 1456, 1561
DpnI GATC 7 cut(s) 57, 210, 317, 494, 861, 918, 1368
DpnII GATC 7 cut(s) 55, 208, 315, 492, 859, 916, 1366
Eam1104I CTCTTC 2 cut(s) 384, 540
EarI CTCTTC 2 cut(s) 384, 540
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 449, 1122, 1428
Eco31I GGTCTC 1 cut(s) 1523
Eco47I GGWCC 2 cut(s) 485, 1433
Eco57I CTGAAG 2 cut(s) 290, 443
Eco81I CCTNAGG 1 cut(s) 669
EcoNI CCTNNNNNAGG 1 cut(s) 606
EcoRII CCWGG 4 cut(s) 601, 929, 1417, 1483
EcoT14I CCWWGG 3 cut(s) 449, 1122, 1428
ErhI CCWWGG 3 cut(s) 449, 1122, 1428
FaeI CATG 5 cut(s) 315, 453, 752, 852, 1090
FaqI GGGAC 1 cut(s) 1141
FatI CATG 5 cut(s) 311, 449, 748, 848, 1086
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 2 cut(s) 96, 440
Fnu4HI GCNGC 6 cut(s) 21, 38, 767, 900, 1377, 1512
FokI GGATG 3 cut(s) 515, 687, 948
Fsp4HI GCNGC 6 cut(s) 21, 38, 767, 900, 1377, 1512
FspBI CTAG 7 cut(s) 203, 386, 404, 479, 807, 830, 920
GlaI GCGC 1 cut(s) 1386
GluI GCNGC 6 cut(s) 21, 38, 767, 900, 1377, 1512
GsuI CTGGAG 4 cut(s) 131, 915, 1257, 1506
HaeIII GGCC 1 cut(s) 1166
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 1387
Hin1II CATG 5 cut(s) 315, 453, 752, 852, 1090
Hin6I GCGC 1 cut(s) 1385
HinP1I GCGC 1 cut(s) 1385
HincII GTYRAC 2 cut(s) 97, 132
HindII GTYRAC 2 cut(s) 97, 132
HindIII AAGCTT 2 cut(s) 1181, 1312
HinfI GANTC 3 cut(s) 731, 996, 1252
HphI GGTGA 2 cut(s) 724, 1160
Hpy166II GTNNAC 4 cut(s) 97, 132, 355, 441
Hpy188I TCNGA 7 cut(s) 80, 423, 497, 570, 691, 1206, 1528
Hpy188III TCNNGA 7 cut(s) 59, 236, 367, 404, 728, 782, 830
Hpy8I GTNNAC 4 cut(s) 97, 132, 355, 441
HpyAV CCTTC 3 cut(s) 270, 492, 1547
HpyCH4III ACNGT 4 cut(s) 660, 953, 1171, 1339
HpyCH4IV ACGT 2 cut(s) 128, 740
HpyCH4V TGCA 8 cut(s) 137, 650, 656, 877, 1079, 1244, 1276, 1379
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 143, 890, 899, 1241, 1382
HpyF3I CTNAG 6 cut(s) 152, 212, 669, 1104, 1456, 1561
HpySE526I ACGT 2 cut(s) 128, 740
Hsp92II CATG 5 cut(s) 315, 453, 752, 852, 1090
HspAI GCGC 1 cut(s) 1385
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 7 cut(s) 55, 208, 315, 492, 859, 916, 1366
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 3 cut(s) 896, 915, 1551
Lsp1109I GCAGC 5 cut(s) 24, 778, 911, 1363, 1523
LweI GCATC 2 cut(s) 148, 1388
MaeI CTAG 7 cut(s) 203, 386, 404, 479, 807, 830, 920
MaeII ACGT 2 cut(s) 128, 740
MaeIII GTNAC 4 cut(s) 712, 736, 851, 1339
MalI GATC 7 cut(s) 57, 210, 317, 494, 861, 918, 1368
MboI GATC 7 cut(s) 55, 208, 315, 492, 859, 916, 1366
MboII GAAGA 7 cut(s) 135, 382, 401, 436, 557, 1189, 1273
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 1366
MhlI GDGCHC 1 cut(s) 961
MmeI TCCRAC 1 cut(s) 1207
MseI TTAA 7 cut(s) 87, 771, 791, 821, 1137, 1185, 1578
MspCI CTTAAG 1 cut(s) 86
MspR9I CCNGG 4 cut(s) 603, 931, 1419, 1485
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 4 cut(s) 603, 931, 1419, 1485
MvnI CGCG 2 cut(s) 60, 146
MwoI GCNNNNNNNGC 6 cut(s) 17, 143, 890, 899, 1241, 1382
NcoI CCATGG 1 cut(s) 449
NdeII GATC 7 cut(s) 55, 208, 315, 492, 859, 916, 1366
NheI GCTAGC 1 cut(s) 806
NlaIII CATG 5 cut(s) 315, 453, 752, 852, 1090
NlaIV GGNNCC 2 cut(s) 1368, 1434
NmuCI GTSAC 4 cut(s) 712, 736, 851, 1339
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 852
PciI ACATGT 1 cut(s) 848
PciSI GCTCTTC 1 cut(s) 540
PfeI GAWTC 3 cut(s) 731, 996, 1252
PflMI CCANNNNNTGG 1 cut(s) 450
PfoI TCCNGGA 1 cut(s) 1417
PkrI GCNGC 6 cut(s) 22, 39, 768, 901, 1378, 1513
PscI ACATGT 1 cut(s) 848
PshBI ATTAAT 1 cut(s) 1578
Psp1406I AACGTT 1 cut(s) 128
Psp6I CCWGG 4 cut(s) 601, 929, 1417, 1483
PspGI CCWGG 4 cut(s) 601, 929, 1417, 1483
PspN4I GGNNCC 2 cut(s) 1368, 1434
PspPI GGNCC 2 cut(s) 485, 1433
PstI CTGCAG 1 cut(s) 879
PstNI CAGNNNCTG 1 cut(s) 1376
PsuI RGATCY 1 cut(s) 1366
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 5 cut(s) 74, 556, 598, 1394, 1602
RsaNI GTAC 5 cut(s) 73, 555, 597, 1393, 1601
SalI GTCGAC 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 7 cut(s) 87, 771, 791, 821, 1137, 1185, 1578
SatI GCNGC 6 cut(s) 21, 38, 767, 900, 1377, 1512
Sau3AI GATC 7 cut(s) 55, 208, 315, 492, 859, 916, 1366
Sau96I GGNCC 2 cut(s) 485, 1433
ScaI AGTACT 1 cut(s) 74
ScrFI CCNGG 4 cut(s) 603, 931, 1419, 1485
SduI GDGCHC 1 cut(s) 961
SfaNI GCATC 2 cut(s) 148, 1388
SfcI CTRYAG 2 cut(s) 875, 952
SinI GGWCC 2 cut(s) 485, 1433
SmlI CTYRAG 2 cut(s) 41, 86
SmoI CTYRAG 2 cut(s) 41, 86
SsiI CCGC 5 cut(s) 20, 53, 146, 161, 1048
SspMI CTAG 7 cut(s) 203, 386, 404, 479, 807, 830, 920
StyD4I CCNGG 4 cut(s) 601, 929, 1417, 1483
StyI CCWWGG 3 cut(s) 449, 1122, 1428
TaaI ACNGT 4 cut(s) 660, 953, 1171, 1339
TaiI ACGT 2 cut(s) 131, 743
TaqI TCGA 2 cut(s) 96, 915
TatI WGTACW 2 cut(s) 72, 1392
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 3 cut(s) 731, 996, 1252
Tru1I TTAA 7 cut(s) 87, 771, 791, 821, 1137, 1185, 1578
Tru9I TTAA 7 cut(s) 87, 771, 791, 821, 1137, 1185, 1578
TscAI CASTG 4 cut(s) 195, 220, 879, 1521
TseFI GTSAC 4 cut(s) 712, 736, 851, 1339
TseI GCWGC 5 cut(s) 37, 766, 899, 1376, 1511
Tsp45I GTSAC 4 cut(s) 712, 736, 851, 1339
TspDTI ATGAA 6 cut(s) 300, 519, 1190, 1481, 1511, 1581
TspRI CASTG 4 cut(s) 195, 220, 879, 1521
Van91I CCANNNNNTGG 1 cut(s) 450
Vha464I CTTAAG 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 485, 1433
VspI ATTAAT 1 cut(s) 1578
XagI CCTNNNNNAGG 1 cut(s) 606
XbaI TCTAGA 2 cut(s) 403, 829
XceI RCATGY 1 cut(s) 852
XmiI GTMKAC 2 cut(s) 96, 440
XspI CTAG 7 cut(s) 203, 386, 404, 479, 807, 830, 920
ZrmI AGTACT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.