Rh1DG049300

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
8013596 .. 8031619
18024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG049300.1

Sequence Viewer

Length: 711 bp
ATGACAGTGGGAGAGATCTTTCTTGCGGCATTCCTTCAGTTGCTGCTGGAGAGGTTAACGCCTCGGGAGATCCTGGGCTACTTTGGAAGCTTTGGAGGAGTTGGCAAAAAGCTGCAGAACTTGAGGGAAACACTGTCCGCAGTTGCAGCGGTGCTTTCCGATGCGGACGAGAAGCAGTTGACGAACAAGGCAGTGGAGCTGTGGCTGAATGTGCTCAGACACTTGGCTTACGATATCGACGATCTACTCAACACCTTTTCTACTGAGATGTTAACACGCAAGCAGCTGAAGGTTGACCAAACTGGCACAAGCAAGGTACGAGGCTTCTCTGCCAAAGTTCTTCACGAACTCAAGTTCAATTTCAATATGAAATCCGAAATAGAGGAGATTTATAATCGCTTGCAAGACATAGTTGACCGGAAAGAGAAACTCGGTTTGAAATATATTGAGCAAACCTCTACGTCAACATCGTCATCGAAAAGGACACTAACTTCGCACCTGCCAGTTGGAACTGTGGTTGGGAGAGATGAAGACGCAAGAGAGATTGTGGATCTGTTGTCCAAAGATGTTCATCCTTCTTCTACCACCAACTATGAAGTTGTTGCCATTGTTGATCATCTTTATGTCTGCATAGCCTATGGAGTTCACTTCCCATACACCACCATCGTCATCAAACTAAGTTTTCTACTTATTGTGACTATAGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

236

Amino Acids

26.61

Weight (kDa)

6.09

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 95 9.8e-20 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AarI CACCTGC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 507
AciI CCGC 4 cut(s) 26, 138, 149, 164
AclWI GGATC 2 cut(s) 64, 558
AcuI CTGAAG 2 cut(s) 20, 308
AfaI GTAC 1 cut(s) 318
AgsI TTSAA 3 cut(s) 358, 364, 439
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 5 cut(s) 90, 112, 199, 286, 706
AluI AGCT 5 cut(s) 90, 112, 199, 286, 706
Alw21I GWGCWC 1 cut(s) 216
AlwI GGATC 2 cut(s) 64, 558
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 63
ApeKI GCWGC 4 cut(s) 43, 112, 146, 283
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
AvaI CYCGRG 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 4 cut(s) 30, 99, 158, 295
BccI CCATC 1 cut(s) 671
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 1 cut(s) 613
BfmI CTRYAG 2 cut(s) 113, 699
BfuAI ACCTGC 1 cut(s) 507
BglII AGATCT 1 cut(s) 15
BisI GCNGC 5 cut(s) 27, 44, 113, 147, 284
BlsI GCNGC 5 cut(s) 28, 45, 114, 148, 285
Bme1390I CCNGG 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 537
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 142, 335
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 2 cut(s) 62, 73
BsaWI WCCGGW 1 cut(s) 417
Bse1I ACTGG 2 cut(s) 307, 503
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 62, 73
BseGI GGATG 1 cut(s) 571
BseJI GATNNNNATC 1 cut(s) 570
BseMII CTCAG 2 cut(s) 229, 255
BseNI ACTGG 2 cut(s) 307, 503
BseRI GAGGAG 2 cut(s) 111, 398
BseXI GCAGC 4 cut(s) 30, 99, 158, 295
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 418
BsmI GAATGC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 5 cut(s) 15, 69, 241, 550, 613
BspACI CCGC 4 cut(s) 26, 138, 149, 164
BspCNI CTCAG 2 cut(s) 228, 256
BspMAI CTGCAG 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 2 cut(s) 64, 558
BsrI ACTGG 2 cut(s) 307, 503
BssECI CCNNGG 2 cut(s) 62, 73
BssMI GATC 5 cut(s) 15, 69, 241, 550, 613
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 7, 135, 514
BstC8I GCNNGC 2 cut(s) 281, 401
BstDEI CTNAG 3 cut(s) 215, 264, 677
BstF5I GGATG 1 cut(s) 571
BstKTI GATC 5 cut(s) 18, 72, 244, 553, 616
BstMBI GATC 5 cut(s) 15, 69, 241, 550, 613
BstMWI GCNNNNNNNGC 2 cut(s) 146, 211
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 2 cut(s) 113, 699
BstV1I GCAGC 4 cut(s) 30, 99, 158, 295
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 3 cut(s) 15, 69, 550
BstYI RGATCY 3 cut(s) 15, 69, 550
BtsCI GGATG 1 cut(s) 571
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 12, 131, 198
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 2 cut(s) 281, 401
CaiI CAGNNNCTG 1 cut(s) 43
CseI GACGC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 317
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 3 cut(s) 215, 264, 677
DpnI GATC 5 cut(s) 17, 71, 243, 552, 615
DpnII GATC 5 cut(s) 15, 69, 241, 550, 613
Eco32I GATATC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 20, 308
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 235
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 5 cut(s) 27, 44, 113, 147, 284
FokI GGATG 1 cut(s) 558
Fsp4HI GCNGC 5 cut(s) 27, 44, 113, 147, 284
GluI GCNGC 5 cut(s) 27, 44, 113, 147, 284
GsuI CTGGAG 1 cut(s) 68
HapII CCGG 1 cut(s) 418
HgaI GACGC 1 cut(s) 542
HincII GTYRAC 6 cut(s) 57, 180, 273, 295, 415, 465
HindII GTYRAC 6 cut(s) 57, 180, 273, 295, 415, 465
HindIII AAGCTT 1 cut(s) 88
HpaI GTTAAC 2 cut(s) 57, 273
HpaII CCGG 1 cut(s) 418
Hpy166II GTNNAC 7 cut(s) 57, 180, 273, 295, 415, 465, 646
Hpy188I TCNGA 3 cut(s) 160, 218, 376
Hpy188III TCNNGA 2 cut(s) 65, 344
Hpy8I GTNNAC 7 cut(s) 57, 180, 273, 295, 415, 465, 646
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 44, 283, 585
HpyCH4III ACNGT 3 cut(s) 7, 135, 514
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 4 cut(s) 115, 146, 403, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 211
HpyF3I CTNAG 3 cut(s) 215, 264, 677
HpySE526I ACGT 1 cut(s) 461
Ksp22I TGATCA 1 cut(s) 613
KspAI GTTAAC 2 cut(s) 57, 273
Kzo9I GATC 5 cut(s) 15, 69, 241, 550, 613
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 7 cut(s) 32, 59, 86, 288, 431, 512, 516
Lsp1109I GCAGC 4 cut(s) 30, 99, 158, 295
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 1 cut(s) 694
MalI GATC 5 cut(s) 17, 71, 243, 552, 615
MboI GATC 5 cut(s) 15, 69, 241, 550, 613
MboII GAAGA 3 cut(s) 332, 542, 570
MflI RGATCY 3 cut(s) 15, 69, 550
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 487
MnlI CCTC 7 cut(s) 45, 72, 89, 117, 314, 376, 466
MseI TTAA 2 cut(s) 56, 272
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 2 cut(s) 149, 286
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 146, 211
NdeII GATC 5 cut(s) 15, 69, 241, 550, 613
NmuCI GTSAC 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 507
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 467
PctI GAATGC 1 cut(s) 29
PkrI GCNGC 5 cut(s) 28, 45, 114, 148, 285
PsiI TTATAA 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PstI CTGCAG 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 43
PsuI RGATCY 3 cut(s) 15, 69, 550
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 2 cut(s) 56, 272
SatI GCNGC 5 cut(s) 27, 44, 113, 147, 284
Sau3AI GATC 5 cut(s) 15, 69, 241, 550, 613
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 2 cut(s) 113, 699
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 2 cut(s) 121, 350
SmoI CTYRAG 2 cut(s) 121, 350
Sse9I AATT 1 cut(s) 358
SsiI CCGC 4 cut(s) 26, 138, 149, 164
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 3 cut(s) 7, 135, 514
TaiI ACGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 237, 476
TasI AATT 1 cut(s) 358
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 56, 272
Tru9I TTAA 2 cut(s) 56, 272
TscAI CASTG 3 cut(s) 12, 138, 198
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 4 cut(s) 43, 112, 146, 283
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 4 cut(s) 383, 543, 560, 609
TspRI CASTG 3 cut(s) 12, 138, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.