Rh1BG039600

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
5199478 .. 5203558
4081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG039600.1

Sequence Viewer

Length: 2502 bp
ATGGACGATCTACTCAACACCTTTTCTAATGAGATGTTAGAACGAAGCAAGGTTGACCAAACTGGCACAAGCAAGGTACGAGGCTTCTTTACCAAAGTTCCTCACAAAGTTAAGTTCAATTTCAATATGAACTCCGAAATAGACGAGATTGCTAATCGTTTGCAAGACATATTTGGCCGGAAAGAGAAACTCGGTTTGAAATATATTGAGCATAACTCTACTTCAACATCATCATCGCAAAGGACACCAAGTTCGCCTGTGTTGGATGCACCTGTGGTTGGGAGAGATGAAGACGCAGGAAAGATTGTGGAATTGTTGTCCAGAGATGCTGATCCTTCTTCTCCCAAAAATTATCAAGTTGTTGCCATTGTTGACATGCCTTCATTGGAAGAAATGCCTCCCCAAGTAAGTCGGTTGACTCATCTGCGAATTTTGCCTAATTTTGTGGTGGGAAAAGGTAGTGCATCTGGGATTGGAGAGATAGGGTCATTGCATCTTTGTGGGGCCTTGAGCCTTAGAAGATTGGAGAATGTGATTGATGTTGGGGATGCAAAGAGGGCCCAAATAATGAATAAGCAGGGGCTGACTACCTTGCAATTGGAATGGAGTGGCTCAAATGAGAAGGAGTCAGAGGTGCTCTGCAGTTTAGAACCTCATAAAAAGCTTCTACATCTCACCATCAAGGGCTACAATGGTTTTGAATTTTCAAAATGGATTGGACATCCTTCATTCTCTGATATGACGTTTGTGAAGTTAGAGAATTGTAAAAATTGTCGATTCTTACCTCCTCTCGGCCAATTACCTTTTCTGAAAGTCCTTTGGATAAAGGGACTGGTCAATGTTGAAAGTGTGGGTGCTGAGTTTTATGGAGAGTGTAGCTTGCCTTTTCCAGTGTTGGAAGCCCTATGGTTCGAGGATATGCAAAATTGGAAGGAGTGGCTTCCTTGCAAAAGAAGTGAAGAAATTCTGGTTTTTCCATGCCTGCGAGAGGTTTCCATCTCTAGATGCCCCAAGTGGCAGGGTTGGCTACCCAAGAACATGGATTCATTATCAGAGCTGTATATTAATGAATGTGAAGAGTCAATGGTTTCAATAGCCAATTATAAACATCTTCGTGAACTGGGCATCGACGGTTGTAAAAGGGTGGTGCACAAAAGTGGATTTAAGTTTGAGTTACTGGAGGATGTGGGGCTTTATAGTATTTCAGAGTTCAGACTCGACATAGGTAGTTCCATCAGAGGATTACCAAAGCTTCAAAGATTGTGGATTACTGGTTGTGAAGAGTTGACATGTTTATGGGAGAATGAGGATAGATGGCTGCAGCGTCGCATTTCTAATATTAATGGAGGCAACATCTCTGACTCCCCCTCTCACTTTATTCAAGAGTTAAGAGCACTCAAGCAACTTGTGTTAACTGGATGCTCAAATCTAATTTCTTTTCCAGAAGCTTCTCTGCCACCTTGTCTTGAAAATGTAAAGATGGAGTCGTGTAATTCTTTGACGCATTTTGTAAGGTGTCAGGTACCGCCAAGCATAAGAAGAATAGAGATGGCAAAATGTCAAAATTTGAAACTACTAGTGAAGGATGCTGGGGAGCTAGAGAGTTGTCTGGAGGACTTGAAGATAACAGAGTGTGCATCTTTGACGTCTTTGACGTCAGGCAAAGGAGGTCGACTACCCAGAACGCTCAAATATCTTTATTTAAGTGACTGTGAACAATTGGAGTCAATAAGCAAAACATTCCATGAGGACACTTGTCTTGAAGATCTTAGGATAGAGAAGTGTGCAAATCTCAAATCCTTACCAGAGGGGCTATGCCATCTCTCCATTCTTCGCAAGTTAATTATAAGCGAATGTGGAAGTCTCGTTTCCTTCCCGAGAGGAGGGATGCCATCCAACCTGACATTCTTGTCTATCTTCAAATGCGATCAATTGGAAGCCTTCCCCAGAGGCATGGGAAACCTCAGTTCTCTTCAGAGTTTGATGTTGGGATACTGTGGAGGTTTGGCATCCATTCTAGAAGAGGGTTTCCCACCCAACCTAATTAATCTTCATATTGTCCATCCCAAAAGCTGGAAGCCTCTCTTAGAGTGGGCGCTTCGCCACTTGGACAGACTCGTCTCTCTTGAATACTTGTATGTCGGTGGTGTAGATCCAGATCTGATGTCCTTTCCGCCGAAGGAGGTGCTGCTCCCAAAATCTCTCGTTAAACTCACCATTGATGACTTCCCAAATCTGAAGCGCCTGTCATCATCTGTTCAATCGCTCACCTCTCTTGAATCCCTTACCATTGTGAATTGCCCAAAGCTAGCATCTGTTATTCCAGAACAAGAGGATCATCTGCCTCTTTCACTTACACAGCTTCGCATCTTTGGGGGCTGTCCGCTGCTCACAAAGAGATACCAACCAGGTAAAGGACGACACTGGCCCAAAATAGCCCACATCCCCTACATTTATGTTGGAGACTTCAAGGACGAAGCCGAAGTCGACCGCTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

833

Amino Acids

93.91

Weight (kDa)

6.3

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 159 - 277 5.9e-32 R13L1/DRL21 LRRs
LRR_14 PF23598 562 - 764 9.8e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1104, 1847
AasI GACNNNNNNGTC 2 cut(s) 1909, 2117
AatII GACGTC 2 cut(s) 1649, 1658
Acc65I GGTACC 1 cut(s) 1522
AccB1I GGYRCC 1 cut(s) 1522
AccB7I CCANNNNNTGG 1 cut(s) 2073
AccI GTMKAC 2 cut(s) 1672, 2487
AciI CCGC 4 cut(s) 1526, 2174, 2384, 2491
AclWI GGATC 3 cut(s) 326, 2147, 2343
AcoI YGGCCR 2 cut(s) 175, 793
AcsI RAATTY 4 cut(s) 429, 701, 963, 1564
AcuI CTGAAG 2 cut(s) 1958, 2258
AcyI GRCGYC 2 cut(s) 1646, 1655
AfaI GTAC 2 cut(s) 78, 1524
AfiI CCNNNNNNNGG 6 cut(s) 278, 791, 988, 1883, 2073, 2414
AflIII ACRYGT 1 cut(s) 1289
AhlI ACTAGT 1 cut(s) 1576
AjnI CCWGG 1 cut(s) 2407
AjuI GAANNNNNNNTTGG 4 cut(s) 789, 821, 1889, 1921
AleI CACNNNNGTG 1 cut(s) 1155
AloI GAACNNNNNNTCC 2 cut(s) 235, 267
AluBI AGCT 9 cut(s) 664, 879, 1057, 1252, 1448, 1597, 2073, 2308, 2362
AluI AGCT 9 cut(s) 664, 879, 1057, 1252, 1448, 1597, 2073, 2308, 2362
Alw21I GWGCWC 3 cut(s) 639, 1152, 1396
Alw26I GTCTC 3 cut(s) 1868, 2125, 2457
Alw44I GTGCAC 1 cut(s) 1148
AlwI GGATC 3 cut(s) 326, 2147, 2343
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 1 cut(s) 1876
AoxI GGCC 5 cut(s) 175, 504, 558, 793, 2426
ApaI GGGCCC 1 cut(s) 562
ApaLI GTGCAC 1 cut(s) 1148
ApeKI GCWGC 4 cut(s) 1318, 1321, 2188, 2386
ApoI RAATTY 4 cut(s) 429, 701, 963, 1564
ArsI GACNNNNNNTTYG 4 cut(s) 235, 267, 2469, 2501
AseI ATTAAT 3 cut(s) 1065, 1341, 2046
Asp700I GAANNNNTTC 1 cut(s) 963
Asp718I GGTACC 1 cut(s) 1522
AspLEI GCGC 2 cut(s) 2098, 2244
AspS9I GGNCC 4 cut(s) 504, 558, 559, 2427
AsuHPI GGTGA 3 cut(s) 667, 2206, 2260
AsuNHI GCTAGC 1 cut(s) 2308
AvaI CYCGRG 1 cut(s) 1876
BaeGI GKGCMC 2 cut(s) 562, 1152
BanI GGYRCC 1 cut(s) 1522
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 3 cut(s) 639, 1152, 1396
BbvI GCAGC 4 cut(s) 1305, 1333, 2175, 2373
BccI CCATC 9 cut(s) 686, 1004, 1241, 1308, 1474, 1543, 1827, 1900, 2070
BcgI CGANNNNNNTGC 2 cut(s) 2167, 2201
BciT130I CCWGG 1 cut(s) 2409
BciVI GTATCC 1 cut(s) 1985
BcoDI GTCTC 3 cut(s) 1868, 2125, 2457
BcuI ACTAGT 1 cut(s) 1576
BfaI CTAG 5 cut(s) 1002, 1577, 1598, 2018, 2309
BfmI CTRYAG 2 cut(s) 640, 1319
BfoI RGCGCY 2 cut(s) 2099, 2245
BfuI GTATCC 1 cut(s) 1985
BglII AGATCT 2 cut(s) 1765, 2158
BisI GCNGC 4 cut(s) 1319, 1322, 2189, 2387
BlsI GCNGC 4 cut(s) 1320, 1323, 2190, 2388
Bme1390I CCNGG 1 cut(s) 2409
BmeT110I CYCGRG 1 cut(s) 1876
BmgT120I GGNCC 4 cut(s) 504, 558, 559, 2427
BmiI GGNNCC 3 cut(s) 505, 560, 1524
BmrFI CCNGG 1 cut(s) 2409
BmrI ACTGGG 1 cut(s) 1130
BmtI GCTAGC 1 cut(s) 2312
BmuI ACTGGG 1 cut(s) 1130
BoxI GACNNNNGTC 1 cut(s) 1755
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 2 cut(s) 1199, 1631
BpuEI CTTGAG 2 cut(s) 529, 1382
BsaBI GATNNNNATC 2 cut(s) 330, 2157
BsaHI GRCGYC 2 cut(s) 1646, 1655
Bsc4I CCNNNNNNNGG 6 cut(s) 278, 791, 988, 1883, 2073, 2414
Bse1I ACTGG 8 cut(s) 67, 837, 890, 1125, 1182, 1276, 1420, 2429
Bse3DI GCAATG 1 cut(s) 488
Bse8I GATNNNNATC 2 cut(s) 330, 2157
BseBI CCWGG 1 cut(s) 2409
BseJI GATNNNNATC 2 cut(s) 330, 2157
BseLI CCNNNNNNNGG 6 cut(s) 278, 791, 988, 1883, 2073, 2414
BseMI GCAATG 1 cut(s) 488
BseMII CTCAG 2 cut(s) 849, 1978
BseNI ACTGG 8 cut(s) 67, 837, 890, 1125, 1182, 1276, 1420, 2429
BseRI GAGGAG 2 cut(s) 777, 1896
BseSI GKGCMC 2 cut(s) 562, 1152
BseXI GCAGC 4 cut(s) 1305, 1333, 2175, 2373
BseYI CCCAGC 1 cut(s) 1589
Bsh1285I CGRYCG 1 cut(s) 2491
BshFI GGCC 5 cut(s) 177, 506, 560, 795, 2428
BshNI GGYRCC 1 cut(s) 1522
BsiEI CGRYCG 1 cut(s) 2491
BsiHKAI GWGCWC 3 cut(s) 639, 1152, 1396
BsiHKCI CYCGRG 1 cut(s) 1876
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 843
BslI CCNNNNNNNGG 6 cut(s) 278, 791, 988, 1883, 2073, 2414
BsmAI GTCTC 3 cut(s) 1868, 2125, 2457
BsmBI CGTCTC 1 cut(s) 2125
BsmFI GGGAC 1 cut(s) 843
BsnI GGCC 5 cut(s) 177, 506, 560, 795, 2428
BsoBI CYCGRG 1 cut(s) 1876
Bsp120I GGGCCC 1 cut(s) 558
Bsp1286I GDGCHC 4 cut(s) 562, 639, 1152, 1396
Bsp143I GATC 7 cut(s) 7, 331, 1765, 1927, 2152, 2158, 2335
BspACI CCGC 4 cut(s) 1526, 2174, 2384, 2491
BspANI GGCC 5 cut(s) 177, 506, 560, 795, 2428
BspCNI CTCAG 2 cut(s) 850, 1977
BspLI GGNNCC 3 cut(s) 505, 560, 1524
BspMAI CTGCAG 2 cut(s) 644, 1323
BspOI GCTAGC 1 cut(s) 2312
BspPI GGATC 3 cut(s) 326, 2147, 2343
BspT107I GGYRCC 1 cut(s) 1522
BsrDI GCAATG 1 cut(s) 488
BsrI ACTGG 8 cut(s) 67, 837, 890, 1125, 1182, 1276, 1420, 2429
BssMI GATC 7 cut(s) 7, 331, 1765, 1927, 2152, 2158, 2335
BssNI GRCGYC 2 cut(s) 1646, 1655
Bst2UI CCWGG 1 cut(s) 2409
Bst4CI ACNGT 3 cut(s) 1133, 1712, 1997
Bst6I CTCTTC 4 cut(s) 1071, 1275, 1977, 2016
BstACI GRCGYC 2 cut(s) 1646, 1655
BstC8I GCNNGC 3 cut(s) 881, 983, 2310
BstDEI CTNAG 5 cut(s) 515, 858, 1769, 1964, 2086
BstENI CCTNNNNNAGG 1 cut(s) 986
BstH2I RGCGCY 2 cut(s) 2099, 2245
BstHHI GCGC 2 cut(s) 2098, 2244
BstKTI GATC 7 cut(s) 10, 334, 1768, 1930, 2155, 2161, 2338
BstMAI GTCTC 3 cut(s) 1868, 2125, 2457
BstMBI GATC 7 cut(s) 7, 331, 1765, 1927, 2152, 2158, 2335
BstMCI CGRYCG 1 cut(s) 2491
BstMWI GCNNNNNNNGC 3 cut(s) 433, 557, 1024
BstNI CCWGG 1 cut(s) 2409
BstNSI RCATGY 2 cut(s) 379, 1293
BstPAI GACNNNNGTC 1 cut(s) 1755
BstSCI CCNGG 1 cut(s) 2407
BstSFI CTRYAG 2 cut(s) 640, 1319
BstSLI GKGCMC 2 cut(s) 562, 1152
BstV1I GCAGC 4 cut(s) 1305, 1333, 2175, 2373
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 3 cut(s) 1765, 2152, 2158
BstXI CCANNNNNNTGG 2 cut(s) 1039, 1954
BstYI RGATCY 3 cut(s) 1765, 2152, 2158
BsuI GTATCC 1 cut(s) 1985
BsuRI GGCC 5 cut(s) 177, 506, 560, 795, 2428
BtgZI GCGATG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 897, 2422
Cac8I GCNNGC 3 cut(s) 881, 983, 2310
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 2 cut(s) 2098, 2244
Cfr13I GGNCC 4 cut(s) 504, 558, 559, 2427
CseI GACGC 3 cut(s) 302, 1313, 1510
CsiI ACCWGGT 1 cut(s) 2407
Csp6I GTAC 2 cut(s) 77, 1523
CspCI CAANNNNNGTGG 2 cut(s) 1244, 1279
CviAII CATG 6 cut(s) 376, 978, 1039, 1290, 1745, 1954
CviQI GTAC 2 cut(s) 77, 1523
DdeI CTNAG 5 cut(s) 515, 858, 1769, 1964, 2086
DpnI GATC 7 cut(s) 9, 333, 1767, 1929, 2154, 2160, 2337
DpnII GATC 7 cut(s) 7, 331, 1765, 1927, 2152, 2158, 2335
DrdI GACNNNNNNGTC 2 cut(s) 1909, 2117
DseDI GACNNNNNNGTC 2 cut(s) 1909, 2117
EaeI YGGCCR 2 cut(s) 175, 793
Eam1104I CTCTTC 4 cut(s) 1071, 1275, 1977, 2016
EarI CTCTTC 4 cut(s) 1071, 1275, 1977, 2016
EciI GGCGGA 1 cut(s) 2163
Eco24I GRGCYC 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 1958, 2258
Eco88I CYCGRG 1 cut(s) 1876
EcoNI CCTNNNNNAGG 1 cut(s) 986
EcoO109I RGGNCCY 2 cut(s) 504, 558
EcoRII CCWGG 1 cut(s) 2407
EcoT38I GRGCYC 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 2125
FaeI CATG 6 cut(s) 379, 981, 1042, 1293, 1748, 1957
FalI AAGNNNNNCTT 2 cut(s) 2069, 2101
FaqI GGGAC 1 cut(s) 843
FatI CATG 6 cut(s) 375, 977, 1038, 1289, 1744, 1953
FblI GTMKAC 2 cut(s) 1672, 2487
Fnu4HI GCNGC 4 cut(s) 1319, 1322, 2189, 2387
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 4 cut(s) 1319, 1322, 2189, 2387
FspBI CTAG 5 cut(s) 1002, 1577, 1598, 2018, 2309
GlaI GCGC 2 cut(s) 2097, 2243
GluI GCNGC 4 cut(s) 1319, 1322, 2189, 2387
GsaI CCCAGC 1 cut(s) 1593
GsuI CTGGAG 2 cut(s) 1199, 1631
HaeII RGCGCY 2 cut(s) 2099, 2245
HaeIII GGCC 5 cut(s) 177, 506, 560, 795, 2428
HapII CCGG 1 cut(s) 178
HgaI GACGC 3 cut(s) 302, 1313, 1510
HhaI GCGC 2 cut(s) 2098, 2244
Hin1I GRCGYC 2 cut(s) 1646, 1655
Hin1II CATG 6 cut(s) 379, 981, 1042, 1293, 1748, 1957
Hin6I GCGC 2 cut(s) 2096, 2242
HinP1I GCGC 2 cut(s) 2096, 2242
HincII GTYRAC 7 cut(s) 55, 373, 417, 1287, 1413, 1673, 2488
HindII GTYRAC 7 cut(s) 55, 373, 417, 1287, 1413, 1673, 2488
HindIII AAGCTT 3 cut(s) 662, 1250, 1446
HpaI GTTAAC 1 cut(s) 1413
HpaII CCGG 1 cut(s) 178
HphI GGTGA 3 cut(s) 667, 2206, 2260
Hpy99I CGWCG 2 cut(s) 1133, 1329
HpyAV CCTTC 9 cut(s) 345, 390, 616, 735, 925, 1576, 1882, 1951, 2173
HpyCH4III ACNGT 3 cut(s) 1133, 1712, 1997
HpyCH4IV ACGT 3 cut(s) 743, 1646, 1655
HpyF10VI GCNNNNNNNGC 3 cut(s) 433, 557, 1024
HpyF3I CTNAG 5 cut(s) 515, 858, 1769, 1964, 2086
HpySE526I ACGT 3 cut(s) 743, 1646, 1655
Hsp92I GRCGYC 2 cut(s) 1646, 1655
Hsp92II CATG 6 cut(s) 379, 981, 1042, 1293, 1748, 1957
HspAI GCGC 2 cut(s) 2096, 2242
KpnI GGTACC 1 cut(s) 1526
KspAI GTTAAC 1 cut(s) 1413
Kzo9I GATC 7 cut(s) 7, 331, 1765, 1927, 2152, 2158, 2335
LmnI GCTCC 2 cut(s) 1594, 2196
Lsp1109I GCAGC 4 cut(s) 1305, 1333, 2175, 2373
MabI ACCWGGT 1 cut(s) 2407
MaeI CTAG 5 cut(s) 1002, 1577, 1598, 2018, 2309
MaeII ACGT 3 cut(s) 743, 1646, 1655
MaeIII GTNAC 2 cut(s) 1173, 1706
MalI GATC 7 cut(s) 9, 333, 1767, 1929, 2154, 2160, 2337
MboI GATC 7 cut(s) 7, 331, 1765, 1927, 2152, 2158, 2335
MfeI CAATTG 3 cut(s) 596, 1718, 1931
MflI RGATCY 3 cut(s) 1765, 2152, 2158
MhlI GDGCHC 4 cut(s) 562, 639, 1152, 1396
MlyI GAGTC 8 cut(s) 412, 635, 1088, 1209, 1355, 1493, 1733, 2109
MmeI TCCRAC 4 cut(s) 243, 876, 1920, 2440
MroXI GAANNNNTTC 1 cut(s) 963
MslI CAYNNNNRTG 4 cut(s) 498, 1113, 1155, 1294
MspA1I CMGCKG 2 cut(s) 2386, 2493
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 2409
MunI CAATTG 3 cut(s) 596, 1718, 1931
MvaI CCWGG 1 cut(s) 2409
MwoI GCNNNNNNNGC 3 cut(s) 433, 557, 1024
NdeII GATC 7 cut(s) 7, 331, 1765, 1927, 2152, 2158, 2335
NheI GCTAGC 1 cut(s) 2308
NlaIII CATG 6 cut(s) 379, 981, 1042, 1293, 1748, 1957
NlaIV GGNNCC 3 cut(s) 505, 560, 1524
NmeAIII GCCGAG 1 cut(s) 771
NmuCI GTSAC 1 cut(s) 1706
NspI RCATGY 2 cut(s) 379, 1293
OliI CACNNNNGTG 1 cut(s) 1155
PciI ACATGT 1 cut(s) 1289
PcsI WCGNNNNNNNCGW 1 cut(s) 1652
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 3 cut(s) 777, 1043, 2279
PflMI CCANNNNNTGG 1 cut(s) 2073
PkrI GCNGC 4 cut(s) 1320, 1323, 2190, 2388
PleI GAGTC 8 cut(s) 412, 634, 1087, 1209, 1355, 1492, 1732, 2109
PpsI GAGTC 8 cut(s) 412, 634, 1087, 1209, 1355, 1492, 1732, 2109
PscI ACATGT 1 cut(s) 1289
PshAI GACNNNNGTC 1 cut(s) 1755
PshBI ATTAAT 3 cut(s) 1065, 1341, 2046
PsiI TTATAA 2 cut(s) 1104, 1847
Psp6I CCWGG 1 cut(s) 2407
PspFI CCCAGC 1 cut(s) 1589
PspGI CCWGG 1 cut(s) 2407
PspN4I GGNNCC 3 cut(s) 505, 560, 1524
PspOMI GGGCCC 1 cut(s) 558
PspPI GGNCC 4 cut(s) 504, 558, 559, 2427
PstI CTGCAG 2 cut(s) 644, 1323
PstNI CAGNNNCTG 1 cut(s) 583
PsuI RGATCY 3 cut(s) 1765, 2152, 2158
RsaI GTAC 2 cut(s) 78, 1524
RsaNI GTAC 2 cut(s) 77, 1523
RseI CAYNNNNRTG 4 cut(s) 498, 1113, 1155, 1294
SalI GTCGAC 2 cut(s) 1671, 2486
SatI GCNGC 4 cut(s) 1319, 1322, 2189, 2387
Sau3AI GATC 7 cut(s) 7, 331, 1765, 1927, 2152, 2158, 2335
Sau96I GGNCC 4 cut(s) 504, 558, 559, 2427
SchI GAGTC 8 cut(s) 412, 635, 1088, 1209, 1355, 1493, 1733, 2109
ScrFI CCNGG 1 cut(s) 2409
SduI GDGCHC 4 cut(s) 562, 639, 1152, 1396
SexAI ACCWGGT 1 cut(s) 2407
SfcI CTRYAG 2 cut(s) 640, 1319
SmiMI CAYNNNNRTG 4 cut(s) 498, 1113, 1155, 1294
SmlI CTYRAG 2 cut(s) 508, 1397
SmoI CTYRAG 2 cut(s) 508, 1397
SpeI ACTAGT 1 cut(s) 1576
SsiI CCGC 4 cut(s) 1526, 2174, 2384, 2491
SspI AATATT 1 cut(s) 1339
SspMI CTAG 5 cut(s) 1002, 1577, 1598, 2018, 2309
StyD4I CCNGG 1 cut(s) 2407
TaaI ACNGT 3 cut(s) 1133, 1712, 1997
TaiI ACGT 3 cut(s) 746, 1649, 1658
TaqI TCGA 6 cut(s) 775, 912, 1128, 1218, 1672, 2487
TfiI GAWTC 3 cut(s) 777, 1043, 2279
TscAI CASTG 2 cut(s) 897, 2429
TseFI GTSAC 1 cut(s) 1706
TseI GCWGC 4 cut(s) 1318, 1321, 2188, 2386
Tsp45I GTSAC 1 cut(s) 1706
TspDTI ATGAA 8 cut(s) 143, 303, 372, 584, 717, 1035, 1083, 2042
TspRI CASTG 2 cut(s) 897, 2429
Van91I CCANNNNNTGG 1 cut(s) 2073
VneI GTGCAC 1 cut(s) 1148
VspI ATTAAT 3 cut(s) 1065, 1341, 2046
XagI CCTNNNNNAGG 1 cut(s) 986
XapI RAATTY 4 cut(s) 429, 701, 963, 1564
XbaI TCTAGA 2 cut(s) 1001, 2017
XceI RCATGY 2 cut(s) 379, 1293
XmiI GTMKAC 2 cut(s) 1672, 2487
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 5 cut(s) 1002, 1577, 1598, 2018, 2309
ZraI GACGTC 2 cut(s) 1647, 1656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.