MD00G1168700.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
38674669 .. 38677078
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1168700.v1.1.491

Sequence Viewer

Length: 2157 bp
ATGCCGGGAGAGGCTTTTCTTGTGGCATTCCTCCAAGTGCTGGTTGACAAGTTGGCGCAACGTGAGGTCTTGAAGTACTTTGGACTCGTAAAGGGCGTCGATCAAAACCTGAAGAAATGGAGTGCCACCTTGTCTGCAATTGGAGCGGTTCTGAATGACGCGGAGGAAAGGCAACTGATGGCTGAGAGCAACGCACTGAAGCTCTGGCTCGATGATCTCAAGGACTTGGCTTTTGATGCGGAAGACATGTTGGATAAATATCATACTAAAATGTTGAAACGTCAGATACAACATGCTCATTCCAGCACAAGAAGCAAAGCATGGAAATCAATTCCTAATCGTGTTTTCAACTTCAAAATGAACTCGGAAATACAGAAGATTTCCGAGCGATTACAAGAGATATCTGAAAGAAAAGACCAGCTTAGTTTGAAAATTGATACTAGGACATTGACTACAAAGGCACGCCAACACATATCGCCGAGTACTAGTCTACCAGATGGACCTGTGATTGGAAGGGATGAGGACAAAGGGAAGATTGTTGAGCTGCTGTCGAAACAAGAGCATCGGGCTGTCAATTTCGAGGTAGTTGCAATTGTCGGTATGGCTGGAGTCGGAAAGACAACACTTGCTGGACAAGTACTTAAAGATATGGTTGCAACCCAAATGTTTCAACCAGCCGTTTGGGTGTGCGTATCTGACGACTTCAACCTTGAAAGAGTGACAAAGCAAATTCTTGAATCAATCACATCTCGGCAATGTACCACAGAAGATTACAATAAGGTTCAAAATGATTTGCATAAGAAGTTAGCGGGGAAAAAGTTTTTAATTGTTTTAGACGATGTTTGGAAAACGTGTAGCTACGGTGAATGGAAGAAGCTGCAGTCCACTTTTCATGATGGAGCACAAGGAAGCAAGATAGTTGTGACAACACGTGATACAGATGTTTCAAAAATGATGGGAGCTGCCACGCTGGTTCACAATTTGAAAATAGACGAATGGGAAGAACTATTGAACAACAAGTTGTGGAGTCTCTCAAATGAGCATGACATACTTCCTGTGTTGAGACTAAGTTACTTTTATCTTCCTTCACATTTGAAAAGATGCTTTGCCTATTGCTCAATAATTCCAAATGACTATGAATTCGGGGAGATGCAAATGATCCTTCTGTGGATGGCCGAGGGTTTGATTCATCCTCAACCAGAAGATAATAAGCAAATTGAAGATTTAGGTGCTGATTATTTTCGGGAGCTCGTATCTAGGTCATTGTTTCAAAAGTCAACCAAAAATACTTCAAAATATGTGATGCATGACCTCATTGGTGATTTAGCACGATGGGCAGCTGGAGATATTTGTTTTAGATTGGAGGATAAGCAAAATGATGATGGTGTACAACTTAGATGTTTTCCGAAGGCTCGCCATTCGTCTTACATTATCGGTCGTTATGATGGGGTTAAAAGATTTGAGGCATTTTCTGAAGTGAAATGTATGCGAACCTTCTTGCCACTCAGAAAGGGTTCTGCCTACAATTATTTAAGCCATCAGGTTACTTCTGATTTATTGCCAAAATTGCAGTACTTGCGGGTGCTTTCTTTTAATGGCTATAGAATAACTGAGCTGCCAAACTCAATTGGTGATTTGACATATCTACGGTATCTTGACCTTTCCTACACAGCTATAAGTAGTTTGCCTAAATCGATAAGTACTCTTTACAACTTGCAGACATTGATATTGGAATGCTGTTACGGTTTGAAGTCATTGCCTGCAGACATGAGTAATCTAATTAATTTGCGCCATCTCAACAACTCAGATGTATCTTCGTTGGAAGGAATGCCTCTAAAACTAGGTAGATTGGTGAATCTCCAATCTTTGCCTAATTTTATGGTCAATGCTGGAAGTGATCAATCAAGAATACGAGAGATGGGGCCCCTATCGCATCTCCGAGGGACATTGTGCATCTCAAGATTGGAGAATGTGACTGATGTTGAGGATGCTCAAGGGGCCAACTTAAAATACAAGGCGAGGCTTGATTCGTTGGTCCTAAAATGGTCTCATTCAAGTGACACAAGAGAAATGGAATCTGCTGTGCTTGACATGTTAGAGCCTCATAGAAAGATCAAGGAGCTCACCATCAAGAGTTATGCCGGCAAGGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

719

Amino Acids

81.86

Weight (kDa)

8.27

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 101 5.5e-20 Rx N-terminal domain
NB-ARC PF00931 174 - 342 6.1e-34 NB-ARC domain
WHD_DRP PF23559 374 - 443 2.8e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 519 - 712 2.9e-20 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 637 - 718 5.4e-21 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 490
AccII CGCG 1 cut(s) 161
AciI CCGC 5 cut(s) 146, 161, 239, 809, 1579
AclWI GGATC 1 cut(s) 1153
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 3 cut(s) 729, 1139, 2150
AcuI CTGAAG 3 cut(s) 131, 218, 1494
AcvI CACGTG 1 cut(s) 932
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 7 cut(s) 77, 484, 639, 760, 1389, 1574, 1702
AfiI CCNNNNNNNGG 2 cut(s) 40, 509
AflIII ACRYGT 4 cut(s) 246, 851, 929, 2091
AhlI ACTAGT 1 cut(s) 485
Alw21I GWGCWC 3 cut(s) 904, 1251, 2124
Alw26I GTCTC 3 cut(s) 1034, 1057, 2052
AlwI GGATC 1 cut(s) 1153
AoxI GGCC 3 cut(s) 1173, 1922, 1998
ApaI GGGCCC 1 cut(s) 1926
ApeKI GCWGC 5 cut(s) 544, 877, 962, 1337, 1615
ApoI RAATTY 3 cut(s) 729, 1139, 2150
ArsI GACNNNNNNTTYG 4 cut(s) 215, 247, 1124, 1156
AseI ATTAAT 1 cut(s) 1782
Asp700I GAANNNNTTC 1 cut(s) 1513
AspLEI GCGC 2 cut(s) 58, 1791
AspS9I GGNCC 5 cut(s) 500, 1922, 1923, 1998, 2035
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 5 cut(s) 875, 1331, 1643, 1864, 2116
AvaII GGWCC 2 cut(s) 500, 2035
BaeGI GKGCMC 1 cut(s) 1926
BaeI ACNNNNGTAYC 2 cut(s) 927, 960
BanII GRGCYC 3 cut(s) 1251, 1926, 2124
BbrPI CACGTG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 3 cut(s) 904, 1251, 2124
BbvI GCAGC 5 cut(s) 531, 864, 949, 1349, 1602
BceAI ACGGC 1 cut(s) 662
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BclI TGATCA 1 cut(s) 1897
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 3 cut(s) 1034, 1057, 2052
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 4 cut(s) 441, 486, 1257, 1841
BfmI CTRYAG 3 cut(s) 878, 1600, 1761
BisI GCNGC 5 cut(s) 545, 878, 963, 1338, 1616
BlsI GCNGC 5 cut(s) 546, 879, 964, 1339, 1617
BmcAI AGTACT 5 cut(s) 77, 484, 639, 1574, 1702
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 2 cut(s) 500, 2035
BmgT120I GGNCC 5 cut(s) 500, 1922, 1923, 1998, 2035
BmiI GGNNCC 4 cut(s) 1923, 1924, 1925, 1999
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 8 cut(s) 226, 571, 1091, 1140, 1293, 1942, 1962, 1978
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 627, 1362
BpuEI CTTGAG 3 cut(s) 203, 1942, 1977
BpuMI CCSGG 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 1694
BsaAI YACGTR 1 cut(s) 932
BsaBI GATNNNNATC 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 2052
BsaJI CCNNGG 2 cut(s) 1176, 1939
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 509
Bse118I RCCGGY 1 cut(s) 2141
Bse3DI GCAATG 2 cut(s) 761, 1754
Bse8I GATNNNNATC 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 1694
BseDI CCNNGG 2 cut(s) 1176, 1939
BseGI GGATG 4 cut(s) 523, 1176, 1189, 1993
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 40, 509
BseMI GCAATG 2 cut(s) 761, 1754
BseMII CTCAG 4 cut(s) 174, 1519, 1602, 1818
BseSI GKGCMC 1 cut(s) 1926
BseXI GCAGC 5 cut(s) 531, 864, 949, 1349, 1602
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 1438
BshFI GGCC 3 cut(s) 1175, 1924, 2000
BshVI ATCGAT 1 cut(s) 1694
BsiEI CGRYCG 1 cut(s) 1438
BsiHKAI GWGCWC 3 cut(s) 904, 1251, 2124
BsiSI CCGG 2 cut(s) 5, 2142
BslFI GGGAC 1 cut(s) 1957
BslI CCNNNNNNNGG 2 cut(s) 40, 509
BsmAI GTCTC 3 cut(s) 1034, 1057, 2052
BsmFI GGGAC 1 cut(s) 1957
BsmI GAATGC 3 cut(s) 26, 1739, 1833
BsnI GGCC 3 cut(s) 1175, 1924, 2000
Bso31I GGTCTC 1 cut(s) 2052
Bsp120I GGGCCC 1 cut(s) 1922
Bsp1286I GDGCHC 4 cut(s) 904, 1251, 1926, 2124
Bsp1407I TGTACA 1 cut(s) 1387
Bsp143I GATC 5 cut(s) 100, 214, 1158, 1897, 2112
BspACI CCGC 5 cut(s) 146, 161, 239, 809, 1579
BspANI GGCC 3 cut(s) 1175, 1924, 2000
BspCNI CTCAG 4 cut(s) 175, 1518, 1603, 1817
BspDI ATCGAT 1 cut(s) 1694
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 4 cut(s) 1923, 1924, 1925, 1999
BspMAI CTGCAG 2 cut(s) 882, 1765
BspPI GGATC 1 cut(s) 1153
BspTNI GGTCTC 1 cut(s) 2052
BsrBI CCGCTC 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 761, 1754
BsrFI RCCGGY 1 cut(s) 2141
BsrGI TGTACA 1 cut(s) 1387
BssAI RCCGGY 1 cut(s) 2141
BssECI CCNNGG 2 cut(s) 1176, 1939
BssMI GATC 5 cut(s) 100, 214, 1158, 1897, 2112
BssNI GRCGYC 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 863, 1650, 1745
BstACI GRCGYC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 1576
BstAUI TGTACA 1 cut(s) 1387
BstBAI YACGTR 1 cut(s) 932
BstC8I GCNNGC 4 cut(s) 463, 1414, 1761, 2143
BstDEI CTNAG 7 cut(s) 183, 422, 1067, 1394, 1505, 1611, 1804
BstF5I GGATG 4 cut(s) 523, 1176, 1189, 1993
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 2 cut(s) 58, 1791
BstKTI GATC 5 cut(s) 103, 217, 1161, 1900, 2115
BstMAI GTCTC 3 cut(s) 1034, 1057, 2052
BstMBI GATC 5 cut(s) 100, 214, 1158, 1897, 2112
BstMCI CGRYCG 1 cut(s) 1438
BstMWI GCNNNNNNNGC 8 cut(s) 143, 236, 312, 1334, 1567, 1576, 1930, 1997
BstNSI RCATGY 3 cut(s) 250, 296, 2095
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 3 cut(s) 878, 1600, 1761
BstSLI GKGCMC 1 cut(s) 1926
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 5 cut(s) 531, 864, 949, 1349, 1602
BstV2I GAAGAC 1 cut(s) 249
BstXI CCANNNNNNTGG 1 cut(s) 681
Bsu15I ATCGAT 1 cut(s) 1694
BsuRI GGCC 3 cut(s) 1175, 1924, 2000
BsuTUI ATCGAT 1 cut(s) 1694
BtsCI GGATG 4 cut(s) 523, 1176, 1189, 1993
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 4 cut(s) 463, 1414, 1761, 2143
CciI TCATGA 1 cut(s) 892
CfoI GCGC 2 cut(s) 58, 1791
Cfr10I RCCGGY 1 cut(s) 2141
Cfr13I GGNCC 5 cut(s) 500, 1922, 1923, 1998, 2035
ClaI ATCGAT 1 cut(s) 1694
CseI GACGC 2 cut(s) 85, 167
Csp6I GTAC 7 cut(s) 76, 483, 638, 759, 1388, 1573, 1701
CviAII CATG 8 cut(s) 247, 293, 321, 893, 1043, 1307, 1768, 2092
CviQI GTAC 7 cut(s) 76, 483, 638, 759, 1388, 1573, 1701
DdeI CTNAG 7 cut(s) 183, 422, 1067, 1394, 1505, 1611, 1804
DpnI GATC 5 cut(s) 102, 216, 1160, 1899, 2114
DpnII GATC 5 cut(s) 100, 214, 1158, 1897, 2112
EaeI YGGCCR 1 cut(s) 1173
Ecl136II GAGCTC 2 cut(s) 1249, 2122
Eco24I GRGCYC 3 cut(s) 1251, 1926, 2124
Eco31I GGTCTC 1 cut(s) 2052
Eco32I GATATC 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 500, 2035
Eco53kI GAGCTC 2 cut(s) 1249, 2122
Eco57I CTGAAG 3 cut(s) 131, 218, 1494
Eco72I CACGTG 1 cut(s) 932
EcoICRI GAGCTC 2 cut(s) 1249, 2122
EcoO109I RGGNCCY 2 cut(s) 1922, 1923
EcoRI GAATTC 1 cut(s) 1139
EcoRV GATATC 1 cut(s) 402
EcoT22I ATGCAT 1 cut(s) 1308
EcoT38I GRGCYC 3 cut(s) 1251, 1926, 2124
FaeI CATG 8 cut(s) 250, 296, 324, 896, 1046, 1310, 1771, 2095
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 1 cut(s) 1957
FatI CATG 8 cut(s) 246, 292, 320, 892, 1042, 1306, 1767, 2091
FauI CCCGC 2 cut(s) 802, 1572
FbaI TGATCA 1 cut(s) 1897
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 5 cut(s) 545, 878, 963, 1338, 1616
FokI GGATG 4 cut(s) 530, 1176, 1183, 2000
FriOI GRGCYC 3 cut(s) 1251, 1926, 2124
Fsp4HI GCNGC 5 cut(s) 545, 878, 963, 1338, 1616
FspBI CTAG 4 cut(s) 441, 486, 1257, 1841
GlaI GCGC 2 cut(s) 57, 1790
GluI GCNGC 5 cut(s) 545, 878, 963, 1338, 1616
GsuI CTGGAG 2 cut(s) 627, 1362
HaeIII GGCC 3 cut(s) 1175, 1924, 2000
HapII CCGG 2 cut(s) 5, 2142
HgaI GACGC 2 cut(s) 85, 167
HhaI GCGC 2 cut(s) 58, 1791
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 8 cut(s) 250, 296, 324, 896, 1046, 1310, 1771, 2095
Hin6I GCGC 2 cut(s) 56, 1789
HinP1I GCGC 2 cut(s) 56, 1789
HincII GTYRAC 2 cut(s) 46, 1278
HindII GTYRAC 2 cut(s) 46, 1278
HinfI GANTC 8 cut(s) 84, 609, 737, 1027, 1186, 1855, 2027, 2075
HpaII CCGG 2 cut(s) 5, 2142
HphI GGTGA 5 cut(s) 875, 1331, 1643, 1864, 2116
Hpy166II GTNNAC 6 cut(s) 46, 491, 885, 976, 1278, 1388
Hpy188III TCNNGA 8 cut(s) 70, 734, 893, 1244, 1655, 1905, 1959, 2131
Hpy8I GTNNAC 6 cut(s) 46, 491, 885, 976, 1278, 1388
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 507, 1095, 1172, 1402, 1504, 1817
HpyCH4III ACNGT 3 cut(s) 863, 1650, 1745
HpyCH4IV ACGT 4 cut(s) 61, 280, 851, 931
HpyF10VI GCNNNNNNNGC 8 cut(s) 143, 236, 312, 1334, 1567, 1576, 1930, 1997
HpyF3I CTNAG 7 cut(s) 183, 422, 1067, 1394, 1505, 1611, 1804
HpySE526I ACGT 4 cut(s) 61, 280, 851, 931
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 8 cut(s) 250, 296, 324, 896, 1046, 1310, 1771, 2095
HspAI GCGC 2 cut(s) 56, 1789
KroI GCCGGC 1 cut(s) 2141
KroNI GCCGGC 1 cut(s) 2143
Ksp22I TGATCA 1 cut(s) 1897
Kzo9I GATC 5 cut(s) 100, 214, 1158, 1897, 2112
LmnI GCTCC 5 cut(s) 143, 899, 959, 1246, 2119
Lsp1109I GCAGC 5 cut(s) 531, 864, 949, 1349, 1602
LweI GCATC 8 cut(s) 226, 571, 1091, 1140, 1293, 1942, 1962, 1978
MaeI CTAG 4 cut(s) 441, 486, 1257, 1841
MaeII ACGT 4 cut(s) 61, 280, 851, 931
MaeIII GTNAC 7 cut(s) 718, 922, 1070, 1543, 1739, 1972, 2057
MalI GATC 5 cut(s) 102, 216, 1160, 1899, 2114
MbiI CCGCTC 1 cut(s) 146
MboI GATC 5 cut(s) 100, 214, 1158, 1897, 2112
MfeI CAATTG 3 cut(s) 138, 591, 1626
MhlI GDGCHC 4 cut(s) 904, 1251, 1926, 2124
MlyI GAGTC 3 cut(s) 78, 618, 1036
MmeI TCCRAC 3 cut(s) 231, 592, 1800
Mph1103I ATGCAT 1 cut(s) 1308
MroNI GCCGGC 1 cut(s) 2141
MroXI GAANNNNTTC 1 cut(s) 1513
MseI TTAA 7 cut(s) 642, 824, 1452, 1532, 1593, 1782, 2006
MslI CAYNNNNRTG 1 cut(s) 2055
MspA1I CMGCKG 1 cut(s) 1340
MspI CCGG 2 cut(s) 5, 2142
MspR9I CCNGG 1 cut(s) 6
MunI CAATTG 3 cut(s) 138, 591, 1626
Mva1269I GAATGC 3 cut(s) 26, 1739, 1833
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 8 cut(s) 143, 236, 312, 1334, 1567, 1576, 1930, 1997
NaeI GCCGGC 1 cut(s) 2143
NciI CCSGG 1 cut(s) 6
NdeII GATC 5 cut(s) 100, 214, 1158, 1897, 2112
NgoMIV GCCGGC 1 cut(s) 2141
NlaIII CATG 8 cut(s) 250, 296, 324, 896, 1046, 1310, 1771, 2095
NlaIV GGNNCC 4 cut(s) 1923, 1924, 1925, 1999
NmeAIII GCCGAG 3 cut(s) 504, 730, 1201
NmuCI GTSAC 4 cut(s) 718, 922, 1972, 2057
NsiI ATGCAT 1 cut(s) 1308
NspI RCATGY 3 cut(s) 250, 296, 2095
PagI TCATGA 1 cut(s) 892
PciI ACATGT 2 cut(s) 246, 2091
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 3 cut(s) 26, 1739, 1833
PdiI GCCGGC 1 cut(s) 2143
PdmI GAANNNNTTC 1 cut(s) 1513
PfeI GAWTC 5 cut(s) 737, 1186, 1855, 2027, 2075
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 5 cut(s) 546, 879, 964, 1339, 1617
PleI GAGTC 3 cut(s) 78, 617, 1035
PmaCI CACGTG 1 cut(s) 932
PmlI CACGTG 1 cut(s) 932
PpsI GAGTC 3 cut(s) 78, 617, 1035
Ppu21I YACGTR 1 cut(s) 932
PscI ACATGT 2 cut(s) 246, 2091
PshBI ATTAAT 1 cut(s) 1782
Psp124BI GAGCTC 2 cut(s) 1251, 2124
PspCI CACGTG 1 cut(s) 932
PspN4I GGNNCC 4 cut(s) 1923, 1924, 1925, 1999
PspOMI GGGCCC 1 cut(s) 1922
PspPI GGNCC 5 cut(s) 500, 1922, 1923, 1998, 2035
PstI CTGCAG 2 cut(s) 882, 1765
PvuII CAGCTG 1 cut(s) 1340
RsaI GTAC 7 cut(s) 77, 484, 639, 760, 1389, 1574, 1702
RsaNI GTAC 7 cut(s) 76, 483, 638, 759, 1388, 1573, 1701
RseI CAYNNNNRTG 1 cut(s) 2055
SacI GAGCTC 2 cut(s) 1251, 2124
SaqAI TTAA 7 cut(s) 642, 824, 1452, 1532, 1593, 1782, 2006
SatI GCNGC 5 cut(s) 545, 878, 963, 1338, 1616
Sau3AI GATC 5 cut(s) 100, 214, 1158, 1897, 2112
Sau96I GGNCC 5 cut(s) 500, 1922, 1923, 1998, 2035
ScaI AGTACT 5 cut(s) 77, 484, 639, 1574, 1702
SchI GAGTC 3 cut(s) 78, 618, 1036
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 4 cut(s) 904, 1251, 1926, 2124
SfaNI GCATC 8 cut(s) 226, 571, 1091, 1140, 1293, 1942, 1962, 1978
SfcI CTRYAG 3 cut(s) 878, 1600, 1761
SinI GGWCC 2 cut(s) 500, 2035
SmiMI CAYNNNNRTG 1 cut(s) 2055
SmlI CTYRAG 3 cut(s) 218, 1957, 1992
SmoI CTYRAG 3 cut(s) 218, 1957, 1992
SpeI ACTAGT 1 cut(s) 485
SsiI CCGC 5 cut(s) 146, 161, 239, 809, 1579
SspMI CTAG 4 cut(s) 441, 486, 1257, 1841
SstI GAGCTC 2 cut(s) 1251, 2124
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 3 cut(s) 863, 1650, 1745
TaiI ACGT 4 cut(s) 64, 283, 854, 934
TaqI TCGA 5 cut(s) 99, 210, 551, 579, 1694
TaqII GACCGA 1 cut(s) 1424
TatI WGTACW 6 cut(s) 75, 482, 637, 1387, 1572, 1700
TfiI GAWTC 5 cut(s) 737, 1186, 1855, 2027, 2075
Tru1I TTAA 7 cut(s) 642, 824, 1452, 1532, 1593, 1782, 2006
Tru9I TTAA 7 cut(s) 642, 824, 1452, 1532, 1593, 1782, 2006
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 4 cut(s) 718, 922, 1972, 2057
TseI GCWGC 5 cut(s) 544, 877, 962, 1337, 1615
Tsp45I GTSAC 4 cut(s) 718, 922, 1972, 2057
TspDTI ATGAA 4 cut(s) 374, 881, 1152, 1178
TspRI CASTG 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 500, 2035
VspI ATTAAT 1 cut(s) 1782
XapI RAATTY 3 cut(s) 729, 1139, 2150
XceI RCATGY 3 cut(s) 250, 296, 2095
XmiI GTMKAC 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 1513
XspI CTAG 4 cut(s) 441, 486, 1257, 1841
ZrmI AGTACT 5 cut(s) 77, 484, 639, 1574, 1702
Zsp2I ATGCAT 1 cut(s) 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.