Rmu_sc0004555.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004555.1
OG0000070
Physical Location & Seq
Forward (+)
25 .. 2562
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004555.1_g000001.1.cds

Sequence Viewer

Length: 2538 bp
atgcatgaccttgttggtgatttggcacggtgggcctctggtgatacatatttcagattggaggataaggtggatggcaaatgctctccaaagactcgtcattcttcttacatttccggtaagtttgatggggtcaccaaatttgaaaaggcattctctgaagcaaagaggctacgaactttcctaccactttcaatctcacatggtcatgagaattatctaacttgtaaggttacttttgagaagttgccaaagttagagtgtttacgagtactttctttgaatggctatcaaataagtctgttgccagaatcaattggtcatctgaagcatctacggtaccttgatctatctcacacactcataacgagtttgcctgaatcaacaaccaccctttacaacttgcagacgttgatattagaaaattgttctcaattgaaggcactacctgcaaaactgaagaatttggcaaaattacgtcatctgaacaactcatgtgtgccttcattggaaggaatgcctcctcagctaagtcaactgactaatctccaaacattatctaattttgtggtgggcaaaggaaatgtgtcaagggtaggagagatagggcctctatcgcttcgctggacattgtgcctcaaaagattggaaaatgtgactaatgttgaggatgcaacaagagcaaacttattgagcaagcaagggcttgatgcactacaactagaatggagtggcactgatggaaaggaatcagaagttcttgacgtgctaaaaccacacataaaccttaaagagctcatcatcaagggttataacggtttggaatttccaacatggattcagcatcctttgttctctgaaatgacccttgtggtgttagagaattgtaaaaaatgtcgattcttgccagcacttggccaattacattctctgaaacaactctttataaaaggaatgtctagtgttgaaagtgtgggtcctgagttttatgggaaagctgagggcttgccttttccagtattagaaactcttgagttcaagaatatggaagattggaaggaatggtttccttgggaacaaagtcaaggaaatggagttttcccttgcctaaaaatgctttccatctccacatgccccaaattgaaaggtagcttacccaagaatattcatttattatcaaagcttgtgattgatggatgtgagcagttggttgtttcaactaccaattataaactgattcacgagttaaatatatgcggttgtaaatgggcggtggatagaagtggggtaaagtttgagttattagaggccatggagctttcaagtatttcagagttcagatttgaaacagaagaattcctgaaaggatttacacagcttaaaaatttaaagactactggttgtgaagagctgacatctttatggaaaagtaggaatagatggctgaaacatcacattggcaactctcagtctcactttgttcaagagctggggtcacttcaacaactacacatcattggatgctcaactctaatttcttttccagaggttgatttgccaccttttcttaaacacttgaagattgagtcatgcagttcccttgtatattttactagatctcatatgcccctaacgctaagaagaatagagattggagattgcttggaacttatatcattagtggagggagaagcgtcttcgtcttcctcttcttcttgtttgatgaatgaggaggcatcctctcttgagtacttgaagatatggaagtgtccatctttgacttccttattgaacagaagccaactgcccagggcacttgaacagctttacttatgggattgtgaacaactggagtcaataactgataagttccaggacaaaacttgtcttgaatgtgttgatatacggcgttgtccaaatcttaaatcattaccggagcgcctgtgctacctcaccaatcttcaaaagttatatatttttcagtgtggaagtctagtttccttccctagaggagggttgccaaatacagcctccaacctcacaaccatctgtatctgggacttaaaattgacagccctccctgaaggcatggtcaagcacaacctcagctctcttcagagattaacaatcgcttactgtaaaggtttggtgtccattctagaagagggttttccctcaaacctaacagtacttaaaattgtggatcccaagagttgtaagccactctctgagtgggggttgcagttggagaaactcacctctctaaaagagttgtggatctctggtgtagatccatatatggtgtcctttccaccagaggatatagagttgatgctccctaaatccctcagtagactcgacattgcaaacttcccaagtctgaggcgcctatccaggaaggcccttcagtccctcacctctcttgaatatcttgagattgctgattgtcaaaagctagcatccatatattccagagaagtatctgcctctttcacttgcaaaacttcacatatatgcatgtccgaagctaaaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

845

Amino Acids

95.47

Weight (kDa)

7.96

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 813, 947, 1230
Acc36I ACCTGC 1 cut(s) 457
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 2 cut(s) 339, 2385
AccB7I CCANNNNNTGG 1 cut(s) 914
AccI GTMKAC 1 cut(s) 2353
AciI CCGC 2 cut(s) 1257, 1271
AclWI GGATC 4 cut(s) 2198, 2211, 2285, 2285
AcoI YGGCCR 1 cut(s) 916
AcsI RAATTY 5 cut(s) 140, 463, 824, 1355, 1384
AcuI CTGAAG 6 cut(s) 180, 347, 479, 2099, 2103, 2390
AcyI GRCGYC 1 cut(s) 2386
AfaI GTAC 4 cut(s) 273, 341, 1751, 2190
AfiI CCNNNNNNNGG 2 cut(s) 914, 2012
AjiI CACGTC 1 cut(s) 766
AjnI CCWGG 3 cut(s) 1808, 1872, 2393
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 1 cut(s) 1476
AlwI GGATC 4 cut(s) 2198, 2211, 2285, 2285
AoxI GGCC 5 cut(s) 33, 608, 916, 1308, 2400
ApoI RAATTY 5 cut(s) 140, 463, 824, 1355, 1384
Asp700I GAANNNNTTC 1 cut(s) 1065
Asp718I GGTACC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 1941, 2388
AspS9I GGNCC 4 cut(s) 33, 608, 977, 2401
AsuHPI GGTGA 6 cut(s) 29, 53, 127, 1945, 2248, 2407
AsuNHI GCTAGC 1 cut(s) 2455
AvaII GGWCC 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 1816
BalI TGGCCA 1 cut(s) 918
BamHI GGATCC 1 cut(s) 2203
BanI GGYRCC 2 cut(s) 339, 2385
BanII GRGCYC 1 cut(s) 798
BauI CACGAG 1 cut(s) 1241
BbsI GAAGAC 2 cut(s) 1689, 1695
Bbv12I GWGCWC 1 cut(s) 798
BbvCI CCTCAGC 3 cut(s) 525, 999, 2105
BccI CCATC 8 cut(s) 68, 122, 734, 1130, 1187, 1434, 1780, 2054
BceAI ACGGC 1 cut(s) 1922
BciT130I CCWGG 3 cut(s) 1810, 1874, 2395
BcoDI GTCTC 1 cut(s) 1476
BfaI CTAG 7 cut(s) 722, 960, 1614, 1994, 2007, 2159, 2456
BfoI RGCGCY 2 cut(s) 1942, 2389
BfuAI ACCTGC 1 cut(s) 457
BglII AGATCT 1 cut(s) 1616
BmcAI AGTACT 3 cut(s) 273, 1751, 2190
Bme1390I CCNGG 3 cut(s) 1810, 1874, 2395
Bme18I GGWCC 1 cut(s) 977
BmgBI CACGTC 1 cut(s) 766
BmgT120I GGNCC 4 cut(s) 33, 608, 977, 2401
BmiI GGNNCC 4 cut(s) 341, 978, 2205, 2387
BmrFI CCNGG 3 cut(s) 1810, 1874, 2395
BmsI GCATC 8 cut(s) 340, 661, 700, 853, 1511, 1745, 2322, 2468
BmtI GCTAGC 1 cut(s) 2459
BpiI GAAGAC 2 cut(s) 1689, 1695
BplI GAGNNNNNCTC 2 cut(s) 1724, 1756
BpmI CTGGAG 1 cut(s) 1871
Bpu10I CCTNAGC 3 cut(s) 525, 999, 2105
BpuEI CTTGAG 3 cut(s) 1052, 1766, 2453
BsaHI GRCGYC 1 cut(s) 2386
BsaJI CCNNGG 4 cut(s) 1070, 1311, 1808, 1809
BsaWI WCCGGW 2 cut(s) 116, 1933
BsaXI ACNNNNNCTCC 2 cut(s) 1928, 1958
Bsc4I CCNNNNNNNGG 2 cut(s) 914, 2012
Bse1I ACTGG 3 cut(s) 1016, 1402, 1854
Bse3DI GCAATG 1 cut(s) 2361
BseBI CCWGG 3 cut(s) 1810, 1874, 2395
BseDI CCNNGG 4 cut(s) 1070, 1311, 1808, 1809
BseGI GGATG 7 cut(s) 79, 676, 844, 1202, 1526, 1736, 2459
BseLI CCNNNNNNNGG 2 cut(s) 914, 2012
BseMI GCAATG 1 cut(s) 2361
BseMII CTCAG 8 cut(s) 539, 972, 990, 1481, 2119, 2220, 2362, 2372
BseNI ACTGG 3 cut(s) 1016, 1402, 1854
BseRI GAGGAG 3 cut(s) 513, 1745, 2025
BseSI GKGCMC 1 cut(s) 1816
BseYI CCCAGC 1 cut(s) 1489
BshFI GGCC 5 cut(s) 35, 610, 918, 1310, 2402
BshNI GGYRCC 2 cut(s) 339, 2385
BsiHKAI GWGCWC 1 cut(s) 798
BsiSI CCGG 2 cut(s) 117, 1934
BslFI GGGAC 2 cut(s) 2072, 2395
BslI CCNNNNNNNGG 2 cut(s) 914, 2012
BsmAI GTCTC 1 cut(s) 1476
BsmFI GGGAC 2 cut(s) 2072, 2395
BsmI GAATGC 2 cut(s) 152, 522
BsnI GGCC 5 cut(s) 35, 610, 918, 1310, 2402
Bsp1286I GDGCHC 2 cut(s) 798, 1816
Bsp143I GATC 5 cut(s) 346, 1616, 2203, 2277, 2290
Bsp19I CCATGG 1 cut(s) 1311
BspACI CCGC 2 cut(s) 1257, 1271
BspANI GGCC 5 cut(s) 35, 610, 918, 1310, 2402
BspCNI CTCAG 8 cut(s) 538, 973, 991, 1480, 2118, 2221, 2361, 2373
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 4 cut(s) 341, 978, 2205, 2387
BspMI ACCTGC 1 cut(s) 457
BspOI GCTAGC 1 cut(s) 2459
BspPI GGATC 4 cut(s) 2198, 2211, 2285, 2285
BspQI GCTCTTC 1 cut(s) 1401
BspT107I GGYRCC 2 cut(s) 339, 2385
BsrDI GCAATG 1 cut(s) 2361
BsrI ACTGG 3 cut(s) 1016, 1402, 1854
BssECI CCNNGG 4 cut(s) 1070, 1311, 1808, 1809
BssMI GATC 5 cut(s) 346, 1616, 2203, 2277, 2290
BssNI GRCGYC 1 cut(s) 2386
BssSI CACGAG 1 cut(s) 1241
BssT1I CCWWGG 2 cut(s) 1070, 1311
Bst2BI CACGAG 1 cut(s) 1241
Bst2UI CCWGG 3 cut(s) 1810, 1874, 2395
Bst4CI ACNGT 5 cut(s) 30, 339, 818, 2138, 2188
Bst6I CTCTTC 4 cut(s) 1401, 1714, 2118, 2157
BstACI GRCGYC 1 cut(s) 2386
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 4 cut(s) 698, 909, 1007, 2457
BstDSI CCRYGG 1 cut(s) 1311
BstEII GGTNACC 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 2010
BstF5I GGATG 7 cut(s) 79, 676, 844, 1202, 1526, 1736, 2459
BstH2I RGCGCY 2 cut(s) 1942, 2389
BstHHI GCGC 2 cut(s) 1941, 2388
BstKTI GATC 5 cut(s) 349, 1619, 2206, 2280, 2293
BstMAI GTCTC 1 cut(s) 1476
BstMBI GATC 5 cut(s) 346, 1616, 2203, 2277, 2290
BstMWI GCNNNNNNNGC 6 cut(s) 32, 449, 526, 616, 680, 1633
BstNI CCWGG 3 cut(s) 1810, 1874, 2395
BstNSI RCATGY 2 cut(s) 1134, 2521
BstPI GGTNACC 1 cut(s) 133
BstSCI CCNGG 3 cut(s) 1808, 1872, 2393
BstSLI GKGCMC 1 cut(s) 1816
BstV2I GAAGAC 2 cut(s) 1689, 1695
BstX2I RGATCY 4 cut(s) 1616, 2203, 2277, 2290
BstYI RGATCY 4 cut(s) 1616, 2203, 2277, 2290
BsuRI GGCC 5 cut(s) 35, 610, 918, 1310, 2402
BtgI CCRYGG 1 cut(s) 1311
BtrI CACGTC 1 cut(s) 766
BtsCI GGATG 7 cut(s) 79, 676, 844, 1202, 1526, 1736, 2459
BtsIMutI CAGTG 2 cut(s) 735, 1988
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 4 cut(s) 698, 909, 1007, 2457
CciI TCATGA 1 cut(s) 208
CfoI GCGC 2 cut(s) 1941, 2388
Cfr13I GGNCC 4 cut(s) 33, 608, 977, 2401
CseI GACGC 1 cut(s) 1683
Csp6I GTAC 4 cut(s) 272, 340, 1750, 2189
CviQI GTAC 4 cut(s) 272, 340, 1750, 2189
DinI GGCGCC 1 cut(s) 2387
DpnI GATC 5 cut(s) 348, 1618, 2205, 2279, 2292
DpnII GATC 5 cut(s) 346, 1616, 2203, 2277, 2290
DraI TTTAAA 1 cut(s) 1389
EaeI YGGCCR 1 cut(s) 916
Eam1104I CTCTTC 4 cut(s) 1401, 1714, 2118, 2157
EarI CTCTTC 4 cut(s) 1401, 1714, 2118, 2157
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 2 cut(s) 1070, 1311
Eco24I GRGCYC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 977
Eco53kI GAGCTC 1 cut(s) 796
Eco57I CTGAAG 6 cut(s) 180, 347, 479, 2099, 2103, 2390
Eco91I GGTNACC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 796
EcoNI CCTNNNNNAGG 1 cut(s) 2010
EcoO109I RGGNCCY 3 cut(s) 608, 977, 2401
EcoO65I GGTNACC 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 1355
EcoRII CCWGG 3 cut(s) 1808, 1872, 2393
EcoT14I CCWWGG 2 cut(s) 1070, 1311
EcoT22I ATGCAT 2 cut(s) 6, 2519
EcoT38I GRGCYC 1 cut(s) 798
EgeI GGCGCC 1 cut(s) 2387
EheI GGCGCC 1 cut(s) 2387
ErhI CCWWGG 2 cut(s) 1070, 1311
FaqI GGGAC 2 cut(s) 2072, 2395
FauNDI CATATG 1 cut(s) 1623
FblI GTMKAC 1 cut(s) 2353
FokI GGATG 7 cut(s) 86, 683, 831, 1209, 1533, 1723, 2446
FriOI GRGCYC 1 cut(s) 798
FspBI CTAG 7 cut(s) 722, 960, 1614, 1994, 2007, 2159, 2456
GlaI GCGC 2 cut(s) 1940, 2387
GsaI CCCAGC 1 cut(s) 1493
GsuI CTGGAG 1 cut(s) 1871
HaeII RGCGCY 2 cut(s) 1942, 2389
HaeIII GGCC 5 cut(s) 35, 610, 918, 1310, 2402
HapII CCGG 2 cut(s) 117, 1934
HgaI GACGC 1 cut(s) 1683
HhaI GCGC 2 cut(s) 1941, 2388
Hin1I GRCGYC 1 cut(s) 2386
Hin6I GCGC 2 cut(s) 1939, 2386
HinP1I GCGC 2 cut(s) 1939, 2386
HincII GTYRAC 1 cut(s) 536
HindII GTYRAC 1 cut(s) 536
HindIII AAGCTT 1 cut(s) 1181
HpaII CCGG 2 cut(s) 117, 1934
HphI GGTGA 6 cut(s) 29, 53, 127, 1945, 2248, 2407
Hpy166II GTNNAC 4 cut(s) 266, 536, 1844, 2354
Hpy8I GTNNAC 4 cut(s) 266, 536, 1844, 2354
HpyAV CCTTC 8 cut(s) 433, 506, 513, 1051, 2011, 2078, 2392, 2414
HpyCH4III ACNGT 5 cut(s) 30, 339, 818, 2138, 2188
HpyCH4IV ACGT 3 cut(s) 410, 478, 765
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 449, 526, 616, 680, 1633
HpySE526I ACGT 3 cut(s) 410, 478, 765
Hsp92I GRCGYC 1 cut(s) 2386
HspAI GCGC 2 cut(s) 1939, 2386
KasI GGCGCC 1 cut(s) 2385
KpnI GGTACC 1 cut(s) 343
Kzo9I GATC 5 cut(s) 346, 1616, 2203, 2277, 2290
LguI GCTCTTC 1 cut(s) 1401
LmnI GCTCC 3 cut(s) 1315, 1936, 2340
LweI GCATC 8 cut(s) 340, 661, 700, 853, 1511, 1745, 2322, 2468
MaeI CTAG 7 cut(s) 722, 960, 1614, 1994, 2007, 2159, 2456
MaeII ACGT 3 cut(s) 410, 478, 765
MaeIII GTNAC 4 cut(s) 133, 232, 655, 1494
MalI GATC 5 cut(s) 348, 1618, 2205, 2279, 2292
MboI GATC 5 cut(s) 346, 1616, 2203, 2277, 2290
MfeI CAATTG 2 cut(s) 315, 434
MflI RGATCY 4 cut(s) 1616, 2203, 2277, 2290
MhlI GDGCHC 2 cut(s) 798, 1816
MlsI TGGCCA 1 cut(s) 918
MluNI TGGCCA 1 cut(s) 918
Mly113I GGCGCC 1 cut(s) 2386
MlyI GAGTC 4 cut(s) 88, 1595, 1862, 2349
MmeI TCCRAC 3 cut(s) 854, 2058, 2226
Mox20I TGGCCA 1 cut(s) 918
Mph1103I ATGCAT 2 cut(s) 6, 2519
MroXI GAANNNNTTC 1 cut(s) 1065
MscI TGGCCA 1 cut(s) 918
MseI TTAA 9 cut(s) 789, 1247, 1380, 1388, 1569, 1923, 2063, 2123, 2193
MslI CAYNNNNRTG 3 cut(s) 207, 1420, 2512
Msp20I TGGCCA 1 cut(s) 918
MspI CCGG 2 cut(s) 117, 1934
MspR9I CCNGG 3 cut(s) 1810, 1874, 2395
MunI CAATTG 2 cut(s) 315, 434
Mva1269I GAATGC 2 cut(s) 152, 522
MvaI CCWGG 3 cut(s) 1810, 1874, 2395
MwoI GCNNNNNNNGC 6 cut(s) 32, 449, 526, 616, 680, 1633
NarI GGCGCC 1 cut(s) 2386
NcoI CCATGG 1 cut(s) 1311
NdeI CATATG 1 cut(s) 1623
NdeII GATC 5 cut(s) 346, 1616, 2203, 2277, 2290
NheI GCTAGC 1 cut(s) 2455
NlaIV GGNNCC 4 cut(s) 341, 978, 2205, 2387
NmuCI GTSAC 3 cut(s) 133, 655, 1494
NsiI ATGCAT 2 cut(s) 6, 2519
NspI RCATGY 2 cut(s) 1134, 2521
PagI TCATGA 1 cut(s) 208
PasI CCCWGGG 1 cut(s) 1809
PciSI GCTCTTC 1 cut(s) 1401
PctI GAATGC 2 cut(s) 152, 522
PdmI GAANNNNTTC 1 cut(s) 1065
PfeI GAWTC 6 cut(s) 311, 380, 749, 838, 900, 1237
PflMI CCANNNNNTGG 1 cut(s) 914
PfoI TCCNGGA 2 cut(s) 1872, 2393
PleI GAGTC 4 cut(s) 88, 1594, 1861, 2349
PluTI GGCGCC 1 cut(s) 2389
PpsI GAGTC 4 cut(s) 88, 1594, 1861, 2349
PpuMI RGGWCCY 1 cut(s) 977
PsiI TTATAA 3 cut(s) 813, 947, 1230
Psp124BI GAGCTC 1 cut(s) 798
Psp5II RGGWCCY 1 cut(s) 977
Psp6I CCWGG 3 cut(s) 1808, 1872, 2393
PspEI GGTNACC 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 1489
PspGI CCWGG 3 cut(s) 1808, 1872, 2393
PspN4I GGNNCC 4 cut(s) 341, 978, 2205, 2387
PspPI GGNCC 4 cut(s) 33, 608, 977, 2401
PspPPI RGGWCCY 1 cut(s) 977
PsuI RGATCY 4 cut(s) 1616, 2203, 2277, 2290
RsaI GTAC 4 cut(s) 273, 341, 1751, 2190
RsaNI GTAC 4 cut(s) 272, 340, 1750, 2189
RseI CAYNNNNRTG 3 cut(s) 207, 1420, 2512
SacI GAGCTC 1 cut(s) 798
SapI GCTCTTC 1 cut(s) 1401
SaqAI TTAA 9 cut(s) 789, 1247, 1380, 1388, 1569, 1923, 2063, 2123, 2193
Sau3AI GATC 5 cut(s) 346, 1616, 2203, 2277, 2290
Sau96I GGNCC 4 cut(s) 33, 608, 977, 2401
ScaI AGTACT 3 cut(s) 273, 1751, 2190
SchI GAGTC 4 cut(s) 88, 1595, 1862, 2349
ScrFI CCNGG 3 cut(s) 1810, 1874, 2395
SduI GDGCHC 2 cut(s) 798, 1816
SfaNI GCATC 8 cut(s) 340, 661, 700, 853, 1511, 1745, 2322, 2468
SfoI GGCGCC 1 cut(s) 2387
SinI GGWCC 1 cut(s) 977
SmiMI CAYNNNNRTG 3 cut(s) 207, 1420, 2512
SmlI CTYRAG 3 cut(s) 1031, 1745, 2432
SmoI CTYRAG 3 cut(s) 1031, 1745, 2432
SsiI CCGC 2 cut(s) 1257, 1271
SspDI GGCGCC 1 cut(s) 2385
SspI AATATT 1 cut(s) 1165
SspMI CTAG 7 cut(s) 722, 960, 1614, 1994, 2007, 2159, 2456
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 3 cut(s) 1808, 1872, 2393
StyI CCWWGG 2 cut(s) 1070, 1311
TaaI ACNGT 5 cut(s) 30, 339, 818, 2138, 2188
TaiI ACGT 3 cut(s) 413, 481, 768
TaqI TCGA 2 cut(s) 898, 2358
TatI WGTACW 3 cut(s) 271, 1749, 2188
TfiI GAWTC 6 cut(s) 311, 380, 749, 838, 900, 1237
Tru1I TTAA 9 cut(s) 789, 1247, 1380, 1388, 1569, 1923, 2063, 2123, 2193
Tru9I TTAA 9 cut(s) 789, 1247, 1380, 1388, 1569, 1923, 2063, 2123, 2193
TscAI CASTG 2 cut(s) 742, 1988
TseFI GTSAC 3 cut(s) 133, 655, 1494
Tsp45I GTSAC 3 cut(s) 133, 655, 1494
TspDTI ATGAA 3 cut(s) 495, 1157, 1739
TspRI CASTG 2 cut(s) 742, 1988
Van91I CCANNNNNTGG 1 cut(s) 914
VpaK11BI GGWCC 1 cut(s) 977
XagI CCTNNNNNAGG 1 cut(s) 2010
XapI RAATTY 5 cut(s) 140, 463, 824, 1355, 1384
XbaI TCTAGA 1 cut(s) 2158
XceI RCATGY 2 cut(s) 1134, 2521
XcmI CCANNNNNNNNNTGG 1 cut(s) 2229
XmiI GTMKAC 1 cut(s) 2353
XmnI GAANNNNTTC 1 cut(s) 1065
XspI CTAG 7 cut(s) 722, 960, 1614, 1994, 2007, 2159, 2456
ZrmI AGTACT 3 cut(s) 273, 1751, 2190
Zsp2I ATGCAT 2 cut(s) 6, 2519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.