Rmu_sc0000087.1_g000014

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000087.1
OG0000070
Physical Location & Seq
Reverse (-)
91874 .. 95920
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000087.1_g000014.1.cds

Sequence Viewer

Length: 4047 bp
atggcagtaggagagatatttcttgcggcatttattcaggtgctgctgaacaggttggtctctggcgactttgtcaacttggcaacccaaaaggggattggcagaaagctggagaaatggagggaaactttgtctaccattgtggctgtgctgtatgatgcagaggagaagcaactaacgagcaaggcagtggagctatggctggatgatcttaaagacttggcttatgatgtggaggacatactggacaagttttccactaagatgttacgacgcaaggtcaagcagcaaaatcgggccggcacaagcaaggtacgagggatcttttctaaagttgctaaagttaaattcaacttgaatatgaactctgaaatcgaggagattgatgatcggttacttcgtatatctcaaaggaaaagcgacctggggttaatatatattgagcctaggtccactgtgatggggcaaaggttgccaagttcatatgtgcttgatggacctgtagttggaaggggtgaagataaaaaaacgattcttgaatttttgtttagatatcatgagccttcgatcaccagttttcacgtagttgcaattgttggtatgccaggaatcggcaagacaacacttgcaggacatgtattcactgcagttaagcaatttaatcccaaggtgtgggtatctgtgtctgataacttcaatcttgagagagtgacgaaaacaatttataagttggtcacatcccaacattgtgatttggatgagttctgtcaagttcaagataatttgcgtgaggcattagaagggaaaaggtttttaattgtcctagatgatgtgtggaccacatgtgactacaattcatggagaagtttgcagtccacttttcatcttggagcacagggaagtaagataattgtgacaacgcgggataaggaagttgcaaaattgatgggagctacagaagtttatgatttgaagactctgtctgacgaagactgtttgcaggtatttcagcaacatgtcaacaatgtcaaaccgccgagttttgagttaaccaagaaaatcgttaaaaattgcgatggattgcctttggctgcgaagacccttggtggtattttacgttgtaaggaaactgacaaatgggaggaagtgttgaataatagattatggactgtgtgtgataatagtggcattctcccagtattaaaattgagctatcattatctcccttcaagtttgaagaggtgctttgcctattgctccatactaccaaatgactatgaattcaagaaaaagcagttaatccttctatggatggcagagggtttgcttcagcaatcagaaggaagtacacagatggaagatattggtgacaactattttgtcgagctcttatctcggtcgctatttcaaaactcgggcaagaacaattcacgatatgtaatgcatgaccttgttggagatttggcacgatgggctgctggaggcacatttttcagactgcaggataaatgggatggtaggtgtgctccaaggatccgacattcatcttacatttctggtctctatgatggggataaaaaatttgagaatgttttaaaattcaagcggttgcggactttcttaccactttcaatttcacaaggtccacaaggtcgtcagcattatctacctcgcaaggttgcttttgatttagtaccaaaattggagtctttacgggtgctctcttttaatggctatcaaataactgagttgccagattcaattggtcatttgaagcatctacggtaccttgatctttcttacacacaaataactagtttgcctgaatcaatcaccactcttttcaacttgcagacattgattttgaaaagttgttctcatttgaaggctctaccaacgaacattagcaatctaactaatctacggcatctcaacaattcacatgcaccgtcattggaaggaatgcctgcacaactaggtcagttgactaatctacaaacactgtgcaagtttttggtgggcaaaggtagcgagtcagggataagcgagatagggcccttattgaatcttcgagggacattgtccatttcaagactgcagaaggtgaatgatgttgaggaagcaaggagggctgacttaactggaaagaaagggcttgatgcattggaactagaatggaatggcataggaaacaaggaattagaggtgcttgacatgttaaaacctcatgaaaagctcagaaaattcatgatcaagggctatggtggtttgacgtttccaaaatggataggatatccttcattcgttgagatgatggttgtaaggttagagaattgtaaaaaatgtcggttcttgcctccacttggacaattatgttctctcaaagaactgtacataactggaatgtctgaagtagaaagcgtgggtcctgagttttatggagatggtagcttgccttttccactgttggagacccttgaatttgaggacatgaaacattggaaggagtggtttccgtgggaacaagtaaaagggaagggagttttcccttgcttaacaatgctatctatctcaagatgccccaatttagagggtaggttacccacaaaccttgtttatctatccaaccttgtgattcgtgaatgcatgcagctggtggtttcgatttccaattataaacaactatgtcaactaaacattgacaattgcaaggcagtggtgcacagaagttcagttgagttcaagttactcaaggttgtaaagcttgctagtatttcagagttcagactccaaatagaggaattcatgagaggattgacaagtgttacgtatttacagattactggttgcgaggagctggcatcttcatggcaaagtgaggatagagtactccaacacttgatgtcacttcatgagctcagaatatataaatgccaaagtctagtatcttttccagaaggtagtctgccatcttctcttaaatatatatggattcagcagtgccattcccttacatcttttgcaagatatcagataccgtcaagtgtaacaagaatagagattcgattgtgcaaaaaattgaaatcattgctaggggagaagggtgaggcttcattaccttcttcttcatctccttgtttgatgcaagacgaatcctttcttgagtacttgaccattactggttgtccatccctcacatccttgtcattcaatggccatgtaccaagggctctcaaacaccttcaaattcatcgaagtgaccaactagagtcgataacagaaagcttctacgagaacaattgtctcgaactttttgatatcttccgttgctcaagtcttaaatccttaccggaggggatatgccacctcaccaatcttcgtttatttgagatttgggactgtaaaagtcttgtttccttcacgagaggagggtcgccaacaggagcctccaatctaaactctcttaagatactcaggattggtcattgtgaaggtcttgtgccttttctacgagagggggggtttactgccaacgtaacatcaattgatatagcaggtttcgatatttttcaactcttcagttgggggctgcatcacttaacctctcttagacagttgaggatccaaggtgctacagatgtggtctcttttccacctgatgagaatcaaatactgcagctccccaaatctctcactagactcacgttcggatactttgtaaatttgatcaaactcagcaagggtcttcaattcctcacctctcttcaatctcttgaaatttgggactgtcctaagctagcattcattccagacaccggcctgcctctttcacttcagaaacttagtatcaaaagatgcccggagatagaagagaaatgcaaacaaggaagaggaagatattggccaaaaatattacgcatccctcacatacagcttggaggctcagactcagaagccaactcggatatcgatgaggacagcagctggaacacgtatataagtgaaaagttgcaagagatctctagtgcagactctccaccttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1348

Amino Acids

152.82

Weight (kDa)

8.41

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 726, 2676
Acc36I ACCTGC 2 cut(s) 991, 3545
Acc65I GGTACC 1 cut(s) 1785
AccB1I GGYRCC 1 cut(s) 1785
AccB7I CCANNNNNTGG 1 cut(s) 672
AccI GTMKAC 1 cut(s) 134
AccII CGCG 1 cut(s) 922
AciI CCGC 5 cut(s) 26, 922, 1034, 1606, 1612
AclWI GGATC 5 cut(s) 329, 1528, 1541, 3616, 3629
AcoI YGGCCR 2 cut(s) 3214, 3902
AcuI CTGAAG 4 cut(s) 1313, 2430, 3562, 3818
AfaI GTAC 8 cut(s) 315, 1348, 1695, 1787, 2393, 2889, 3167, 3222
AfiI CCNNNNNNNGG 7 cut(s) 93, 506, 611, 672, 2363, 2797, 3815
AflII CTTAAG 1 cut(s) 3464
AflIII ACRYGT 5 cut(s) 634, 842, 1015, 2214, 3990
AhdI GACNNNNNGTC 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 1814
AjnI CCWGG 2 cut(s) 423, 604
Alw21I GWGCWC 6 cut(s) 895, 1389, 1528, 1722, 2724, 2919
Alw26I GTCTC 5 cut(s) 64, 1565, 2465, 3308, 3649
Alw44I GTGCAC 1 cut(s) 2720
AlwI GGATC 5 cut(s) 329, 1528, 1541, 3616, 3629
AlwNI CAGNNNCTG 2 cut(s) 43, 3984
Ama87I CYCGRG 1 cut(s) 1414
AoxI GGCC 5 cut(s) 297, 2054, 3214, 3817, 3902
ApaI GGGCCC 1 cut(s) 2058
ApaLI GTGCAC 1 cut(s) 2720
ApeKI GCWGC 8 cut(s) 43, 286, 1091, 1475, 2650, 3589, 3676, 3981
ArsI GACNNNNNNTTYG 6 cut(s) 1361, 1393, 1691, 1723, 1846, 1878
Asp700I GAANNNNTTC 1 cut(s) 3156
Asp718I GGTACC 1 cut(s) 1785
AspA2I CCTAGG 1 cut(s) 446
AspS9I GGNCC 8 cut(s) 297, 450, 497, 837, 1643, 2054, 2055, 2426
AsuC2I CCSGG 1 cut(s) 3860
AsuHPI GGTGA 8 cut(s) 527, 562, 1379, 1825, 2116, 3116, 3361, 3748
AsuNHI GCTAGC 1 cut(s) 3796
AvaI CYCGRG 1 cut(s) 1414
AvaII GGWCC 5 cut(s) 450, 497, 837, 1643, 2426
AvrII CCTAGG 1 cut(s) 446
BaeGI GKGCMC 2 cut(s) 2058, 2724
BalI TGGCCA 2 cut(s) 3216, 3904
BamHI GGATCC 2 cut(s) 1533, 3621
BanI GGYRCC 1 cut(s) 1785
BanII GRGCYC 4 cut(s) 1389, 2058, 2919, 3232
BauI CACGAG 1 cut(s) 3421
BbsI GAAGAC 4 cut(s) 980, 996, 1103, 3737
Bbv12I GWGCWC 6 cut(s) 895, 1389, 1528, 1722, 2724, 2919
BbvI GCAGC 8 cut(s) 30, 298, 1078, 1462, 2662, 3576, 3688, 3993
BceAI ACGGC 1 cut(s) 1940
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 2 cut(s) 425, 606
BciVI GTATCC 1 cut(s) 3704
BclI TGATCA 2 cut(s) 2250, 3726
BcnI CCSGG 1 cut(s) 3860
BcoDI GTCTC 5 cut(s) 64, 1565, 2465, 3308, 3649
BcuI ACTAGT 1 cut(s) 1814
BfmI CTRYAG 7 cut(s) 501, 645, 954, 1499, 2096, 3633, 3674
BfrI CTTAAG 1 cut(s) 3464
BfuAI ACCTGC 2 cut(s) 991, 3545
BfuI GTATCC 1 cut(s) 3704
BglII AGATCT 1 cut(s) 4017
BisI GCNGC 9 cut(s) 27, 44, 287, 1092, 1476, 2651, 3590, 3677, 3982
BlnI CCTAGG 1 cut(s) 446
BlsI GCNGC 9 cut(s) 28, 45, 288, 1093, 1477, 2652, 3591, 3678, 3983
BmcAI AGTACT 2 cut(s) 2889, 3167
Bme1390I CCNGG 3 cut(s) 425, 606, 3860
Bme18I GGWCC 5 cut(s) 450, 497, 837, 1643, 2426
BmeRI GACNNNNNGTC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 1414
BmgT120I GGNCC 8 cut(s) 297, 450, 497, 837, 1643, 2054, 2055, 2426
BmiI GGNNCC 6 cut(s) 1535, 1787, 2056, 2427, 3445, 3623
BmrFI CCNGG 3 cut(s) 425, 606, 3860
BmrI ACTGGG 1 cut(s) 1190
BmtI GCTAGC 1 cut(s) 3800
BmuI ACTGGG 1 cut(s) 1190
BpiI GAAGAC 4 cut(s) 980, 996, 1103, 3737
BpmI CTGGAG 2 cut(s) 131, 1500
Bpu10I CCTNAGC 1 cut(s) 3792
BpuEI CTTGAG 5 cut(s) 722, 2557, 2735, 3182, 3316
BpuMI CCSGG 1 cut(s) 3860
Bsa29I ATCGAT 1 cut(s) 3969
BsaAI YACGTR 3 cut(s) 583, 2829, 3993
BsaBI GATNNNNATC 1 cut(s) 3663
BsaI GGTCTC 4 cut(s) 64, 1565, 2465, 3649
BsaJI CCNNGG 8 cut(s) 424, 446, 666, 1102, 1529, 2516, 3224, 3625
BsaWI WCCGGW 1 cut(s) 3349
BsaXI ACNNNNNCTCC 4 cut(s) 1133, 1163, 3663, 3693
Bsc4I CCNNNNNNNGG 7 cut(s) 93, 506, 611, 672, 2363, 2797, 3815
Bse118I RCCGGY 2 cut(s) 299, 3815
Bse1I ACTGG 7 cut(s) 249, 573, 1196, 2146, 2404, 2848, 3184
Bse3DI GCAATG 1 cut(s) 3086
Bse8I GATNNNNATC 1 cut(s) 3663
BseBI CCWGG 2 cut(s) 425, 606
BseCI ATCGAT 1 cut(s) 3969
BseDI CCNNGG 8 cut(s) 424, 446, 666, 1102, 1529, 2516, 3224, 3625
BseGI GGATG 8 cut(s) 211, 737, 763, 1317, 1519, 3188, 3197, 3918
BseJI GATNNNNATC 1 cut(s) 3663
BseLI CCNNNNNNNGG 7 cut(s) 93, 506, 611, 672, 2363, 2797, 3815
BseMI GCAATG 1 cut(s) 3086
BseMII CTCAG 8 cut(s) 1737, 2251, 2421, 2932, 3487, 3748, 3957, 3963
BseNI ACTGG 7 cut(s) 249, 573, 1196, 2146, 2404, 2848, 3184
BseRI GAGGAG 4 cut(s) 179, 392, 2867, 3441
BseSI GKGCMC 2 cut(s) 2058, 2724
BseXI GCAGC 8 cut(s) 30, 298, 1078, 1462, 2662, 3576, 3688, 3993
BsgI GTGCAG 2 cut(s) 1953, 4047
Bsh1236I CGCG 1 cut(s) 922
Bsh1285I CGRYCG 1 cut(s) 1400
BshFI GGCC 5 cut(s) 299, 2056, 3216, 3819, 3904
BshNI GGYRCC 1 cut(s) 1785
BshVI ATCGAT 1 cut(s) 3969
BsiEI CGRYCG 1 cut(s) 1400
BsiHKAI GWGCWC 6 cut(s) 895, 1389, 1528, 1722, 2724, 2919
BsiHKCI CYCGRG 1 cut(s) 1414
BsiSI CCGG 4 cut(s) 300, 3350, 3816, 3860
BslFI GGGAC 3 cut(s) 2089, 3410, 3797
BslI CCNNNNNNNGG 7 cut(s) 93, 506, 611, 672, 2363, 2797, 3815
BsmAI GTCTC 5 cut(s) 64, 1565, 2465, 3308, 3649
BsmFI GGGAC 3 cut(s) 2089, 3410, 3797
BsmI GAATGC 4 cut(s) 1188, 1968, 2648, 3800
BsnI GGCC 5 cut(s) 299, 2056, 3216, 3819, 3904
Bso31I GGTCTC 4 cut(s) 64, 1565, 2465, 3649
BsoBI CYCGRG 1 cut(s) 1414
Bsp120I GGGCCC 1 cut(s) 2054
Bsp1286I GDGCHC 8 cut(s) 895, 1389, 1528, 1722, 2058, 2724, 2919, 3232
Bsp1407I TGTACA 1 cut(s) 2391
BspACI CCGC 5 cut(s) 26, 922, 1034, 1606, 1612
BspANI GGCC 5 cut(s) 299, 2056, 3216, 3819, 3904
BspCNI CTCAG 8 cut(s) 1738, 2250, 2422, 2931, 3486, 3747, 3956, 3962
BspDI ATCGAT 1 cut(s) 3969
BspFNI CGCG 1 cut(s) 922
BspHI TCATGA 5 cut(s) 556, 2227, 2247, 2805, 2911
BspLI GGNNCC 6 cut(s) 1535, 1787, 2056, 2427, 3445, 3623
BspMAI CTGCAG 4 cut(s) 649, 1503, 2100, 3678
BspMI ACCTGC 2 cut(s) 991, 3545
BspOI GCTAGC 1 cut(s) 3800
BspPI GGATC 5 cut(s) 329, 1528, 1541, 3616, 3629
BspT107I GGYRCC 1 cut(s) 1785
BspTI CTTAAG 1 cut(s) 3464
BspTNI GGTCTC 4 cut(s) 64, 1565, 2465, 3649
BsrDI GCAATG 1 cut(s) 3086
BsrFI RCCGGY 2 cut(s) 299, 3815
BsrGI TGTACA 1 cut(s) 2391
BsrI ACTGG 7 cut(s) 249, 573, 1196, 2146, 2404, 2848, 3184
BssAI RCCGGY 2 cut(s) 299, 3815
BssECI CCNNGG 8 cut(s) 424, 446, 666, 1102, 1529, 2516, 3224, 3625
BssSI CACGAG 1 cut(s) 3421
BssT1I CCWWGG 6 cut(s) 446, 666, 1102, 1529, 3224, 3625
Bst2BI CACGAG 1 cut(s) 3421
Bst2UI CCWGG 2 cut(s) 425, 606
Bst6I CTCTTC 5 cut(s) 1232, 3581, 3768, 3864, 3883
BstAFI CTTAAG 1 cut(s) 3464
BstAPI GCANNNNNTGC 1 cut(s) 472
BstAUI TGTACA 1 cut(s) 2391
BstBAI YACGTR 3 cut(s) 583, 2829, 3993
BstC8I GCNNGC 8 cut(s) 301, 1968, 2453, 2648, 2766, 2859, 3798, 3821
BstDSI CCRYGG 1 cut(s) 2516
BstEII GGTNACC 1 cut(s) 2598
BstF5I GGATG 8 cut(s) 211, 737, 763, 1317, 1519, 3188, 3197, 3918
BstFNI CGCG 1 cut(s) 922
BstMAI GTCTC 5 cut(s) 64, 1565, 2465, 3308, 3649
BstMCI CGRYCG 1 cut(s) 1400
BstMWI GCNNNNNNNGC 4 cut(s) 472, 1472, 2028, 2129
BstNI CCWGG 2 cut(s) 425, 606
BstNSI RCATGY 6 cut(s) 638, 846, 1019, 1946, 2218, 2650
BstPI GGTNACC 1 cut(s) 2598
BstSCI CCNGG 3 cut(s) 423, 604, 3858
BstSFI CTRYAG 7 cut(s) 501, 645, 954, 1499, 2096, 3633, 3674
BstSLI GKGCMC 2 cut(s) 2058, 2724
BstSNI TACGTA 1 cut(s) 2829
BstUI CGCG 1 cut(s) 922
BstV1I GCAGC 8 cut(s) 30, 298, 1078, 1462, 2662, 3576, 3688, 3993
BstV2I GAAGAC 4 cut(s) 980, 996, 1103, 3737
BstX2I RGATCY 4 cut(s) 321, 1533, 3621, 4017
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 4 cut(s) 321, 1533, 3621, 4017
Bsu15I ATCGAT 1 cut(s) 3969
BsuI GTATCC 1 cut(s) 3704
BsuRI GGCC 5 cut(s) 299, 2056, 3216, 3819, 3904
BsuTUI ATCGAT 1 cut(s) 3969
BtgI CCRYGG 1 cut(s) 2516
BtgZI GCGATG 1 cut(s) 1089
BtsCI GGATG 8 cut(s) 211, 737, 763, 1317, 1519, 3188, 3197, 3918
BtsI GCAGTG 4 cut(s) 195, 642, 2721, 3005
BtsIMutI CAGTG 7 cut(s) 195, 453, 642, 2000, 2462, 2721, 3005
BveI ACCTGC 2 cut(s) 991, 3545
Cac8I GCNNGC 8 cut(s) 301, 1968, 2453, 2648, 2766, 2859, 3798, 3821
CaiI CAGNNNCTG 2 cut(s) 43, 3984
CciI TCATGA 5 cut(s) 556, 2227, 2247, 2805, 2911
Cfr10I RCCGGY 2 cut(s) 299, 3815
Cfr13I GGNCC 8 cut(s) 297, 450, 497, 837, 1643, 2054, 2055, 2426
ClaI ATCGAT 1 cut(s) 3969
CseI GACGC 1 cut(s) 282
Csp6I GTAC 8 cut(s) 314, 1347, 1694, 1786, 2392, 2888, 3166, 3221
CspCI CAANNNNNGTGG 2 cut(s) 2593, 2628
CviQI GTAC 8 cut(s) 314, 1347, 1694, 1786, 2392, 2888, 3166, 3221
DraI TTTAAA 1 cut(s) 1596
DriI GACNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 2 cut(s) 3214, 3902
Eam1104I CTCTTC 5 cut(s) 1232, 3581, 3768, 3864, 3883
Eam1105I GACNNNNNGTC 1 cut(s) 278
EarI CTCTTC 5 cut(s) 1232, 3581, 3768, 3864, 3883
Ecl136II GAGCTC 2 cut(s) 1387, 2917
Eco105I TACGTA 1 cut(s) 2829
Eco130I CCWWGG 6 cut(s) 446, 666, 1102, 1529, 3224, 3625
Eco24I GRGCYC 4 cut(s) 1389, 2058, 2919, 3232
Eco31I GGTCTC 4 cut(s) 64, 1565, 2465, 3649
Eco32I GATATC 5 cut(s) 554, 2294, 3029, 3319, 3967
Eco47I GGWCC 5 cut(s) 450, 497, 837, 1643, 2426
Eco53kI GAGCTC 2 cut(s) 1387, 2917
Eco57I CTGAAG 4 cut(s) 1313, 2430, 3562, 3818
Eco88I CYCGRG 1 cut(s) 1414
Eco91I GGTNACC 1 cut(s) 2598
EcoICRI GAGCTC 2 cut(s) 1387, 2917
EcoO109I RGGNCCY 3 cut(s) 2054, 2055, 2426
EcoO65I GGTNACC 1 cut(s) 2598
EcoRI GAATTC 2 cut(s) 1280, 2801
EcoRII CCWGG 2 cut(s) 423, 604
EcoRV GATATC 5 cut(s) 554, 2294, 3029, 3319, 3967
EcoT14I CCWWGG 6 cut(s) 446, 666, 1102, 1529, 3224, 3625
EcoT22I ATGCAT 3 cut(s) 1446, 2164, 2648
EcoT38I GRGCYC 4 cut(s) 1389, 2058, 2919, 3232
ErhI CCWWGG 6 cut(s) 446, 666, 1102, 1529, 3224, 3625
FalI AAGNNNNNCTT 2 cut(s) 1229, 1261
FaqI GGGAC 3 cut(s) 2089, 3410, 3797
FauI CCCGC 1 cut(s) 915
FauNDI CATATG 1 cut(s) 484
FbaI TGATCA 2 cut(s) 2250, 3726
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 9 cut(s) 27, 44, 287, 1092, 1476, 2651, 3590, 3677, 3982
FokI GGATG 8 cut(s) 218, 724, 770, 1324, 1526, 3175, 3184, 3905
FriOI GRGCYC 4 cut(s) 1389, 2058, 2919, 3232
Fsp4HI GCNGC 9 cut(s) 27, 44, 287, 1092, 1476, 2651, 3590, 3677, 3982
GluI GCNGC 9 cut(s) 27, 44, 287, 1092, 1476, 2651, 3590, 3677, 3982
GsuI CTGGAG 2 cut(s) 131, 1500
HaeIII GGCC 5 cut(s) 299, 2056, 3216, 3819, 3904
HapII CCGG 4 cut(s) 300, 3350, 3816, 3860
HgaI GACGC 1 cut(s) 282
HincII GTYRAC 5 cut(s) 76, 1021, 1050, 1986, 2690
HindII GTYRAC 5 cut(s) 76, 1021, 1050, 1986, 2690
HindIII AAGCTT 2 cut(s) 2762, 3283
HpaI GTTAAC 1 cut(s) 1050
HpaII CCGG 4 cut(s) 300, 3350, 3816, 3860
HphI GGTGA 8 cut(s) 527, 562, 1379, 1825, 2116, 3116, 3361, 3748
Hpy99I CGWCG 1 cut(s) 276
HpyCH4IV ACGT 7 cut(s) 582, 1117, 2273, 2828, 3534, 3704, 3992
HpyF10VI GCNNNNNNNGC 4 cut(s) 472, 1472, 2028, 2129
HpySE526I ACGT 7 cut(s) 582, 1117, 2273, 2828, 3534, 3704, 3992
KpnI GGTACC 1 cut(s) 1789
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Ksp22I TGATCA 2 cut(s) 2250, 3726
KspAI GTTAAC 1 cut(s) 1050
LmnI GCTCC 8 cut(s) 193, 890, 950, 1262, 1531, 2854, 3443, 3684
Lsp1109I GCAGC 8 cut(s) 30, 298, 1078, 1462, 2662, 3576, 3688, 3993
MaeII ACGT 7 cut(s) 582, 1117, 2273, 2828, 3534, 3704, 3992
MfeI CAATTG 5 cut(s) 591, 1761, 2704, 3298, 3543
MflI RGATCY 4 cut(s) 321, 1533, 3621, 4017
MhlI GDGCHC 8 cut(s) 895, 1389, 1528, 1722, 2058, 2724, 2919, 3232
MlsI TGGCCA 2 cut(s) 3216, 3904
MluNI TGGCCA 2 cut(s) 3216, 3904
MlyI GAGTC 8 cut(s) 970, 1715, 2042, 2781, 3278, 3693, 3941, 4025
MmeI TCCRAC 6 cut(s) 487, 1435, 1561, 2448, 2649, 2917
Mox20I TGGCCA 2 cut(s) 3216, 3904
Mph1103I ATGCAT 3 cut(s) 1446, 2164, 2648
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 3156
MscI TGGCCA 2 cut(s) 3216, 3904
MslI CAYNNNNRTG 4 cut(s) 263, 458, 2866, 3255
Msp20I TGGCCA 2 cut(s) 3216, 3904
MspA1I CMGCKG 2 cut(s) 2653, 3984
MspCI CTTAAG 1 cut(s) 3464
MspI CCGG 4 cut(s) 300, 3350, 3816, 3860
MspR9I CCNGG 3 cut(s) 425, 606, 3860
MunI CAATTG 5 cut(s) 591, 1761, 2704, 3298, 3543
Mva1269I GAATGC 4 cut(s) 1188, 1968, 2648, 3800
MvaI CCWGG 2 cut(s) 425, 606
MvnI CGCG 1 cut(s) 922
MwoI GCNNNNNNNGC 4 cut(s) 472, 1472, 2028, 2129
NaeI GCCGGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 3860
NdeI CATATG 1 cut(s) 484
NgoMIV GCCGGC 1 cut(s) 299
NheI GCTAGC 1 cut(s) 3796
NlaIV GGNNCC 6 cut(s) 1535, 1787, 2056, 2427, 3445, 3623
NmeAIII GCCGAG 1 cut(s) 1062
NmuCI GTSAC 7 cut(s) 709, 733, 845, 913, 1367, 2904, 3257
NsiI ATGCAT 3 cut(s) 1446, 2164, 2648
NspI RCATGY 6 cut(s) 638, 846, 1019, 1946, 2218, 2650
PaeI GCATGC 1 cut(s) 2650
PagI TCATGA 5 cut(s) 556, 2227, 2247, 2805, 2911
PciI ACATGT 4 cut(s) 634, 842, 1015, 2214
PcsI WCGNNNNNNNCGW 1 cut(s) 397
PctI GAATGC 4 cut(s) 1188, 1968, 2648, 3800
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 3156
PflFI GACNNNGTC 3 cut(s) 71, 979, 2080
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 9 cut(s) 28, 45, 288, 1093, 1477, 2652, 3591, 3678, 3983
PleI GAGTC 8 cut(s) 970, 1714, 2041, 2781, 3277, 3693, 3941, 4025
PpsI GAGTC 8 cut(s) 970, 1714, 2041, 2781, 3277, 3693, 3941, 4025
Ppu21I YACGTR 3 cut(s) 583, 2829, 3993
PpuMI RGGWCCY 1 cut(s) 2426
PscI ACATGT 4 cut(s) 634, 842, 1015, 2214
PsiI TTATAA 2 cut(s) 726, 2676
Psp124BI GAGCTC 2 cut(s) 1389, 2919
Psp5II RGGWCCY 1 cut(s) 2426
Psp6I CCWGG 2 cut(s) 423, 604
PspEI GGTNACC 1 cut(s) 2598
PspGI CCWGG 2 cut(s) 423, 604
PspN4I GGNNCC 6 cut(s) 1535, 1787, 2056, 2427, 3445, 3623
PspOMI GGGCCC 1 cut(s) 2054
PspPI GGNCC 8 cut(s) 297, 450, 497, 837, 1643, 2054, 2055, 2426
PspPPI RGGWCCY 1 cut(s) 2426
PstI CTGCAG 4 cut(s) 649, 1503, 2100, 3678
PstNI CAGNNNCTG 2 cut(s) 43, 3984
PsuI RGATCY 4 cut(s) 321, 1533, 3621, 4017
PsyI GACNNNGTC 3 cut(s) 71, 979, 2080
PvuII CAGCTG 2 cut(s) 2653, 3984
RsaI GTAC 8 cut(s) 315, 1348, 1695, 1787, 2393, 2889, 3167, 3222
RsaNI GTAC 8 cut(s) 314, 1347, 1694, 1786, 2392, 2888, 3166, 3221
RseI CAYNNNNRTG 4 cut(s) 263, 458, 2866, 3255
SacI GAGCTC 2 cut(s) 1389, 2919
SatI GCNGC 9 cut(s) 27, 44, 287, 1092, 1476, 2651, 3590, 3677, 3982
Sau96I GGNCC 8 cut(s) 297, 450, 497, 837, 1643, 2054, 2055, 2426
ScaI AGTACT 2 cut(s) 2889, 3167
SchI GAGTC 8 cut(s) 970, 1715, 2042, 2781, 3278, 3693, 3941, 4025
ScrFI CCNGG 3 cut(s) 425, 606, 3860
SduI GDGCHC 8 cut(s) 895, 1389, 1528, 1722, 2058, 2724, 2919, 3232
SfcI CTRYAG 7 cut(s) 501, 645, 954, 1499, 2096, 3633, 3674
SinI GGWCC 5 cut(s) 450, 497, 837, 1643, 2426
SmiMI CAYNNNNRTG 4 cut(s) 263, 458, 2866, 3255
SmlI CTYRAG 6 cut(s) 701, 2572, 2750, 3161, 3331, 3464
SmoI CTYRAG 6 cut(s) 701, 2572, 2750, 3161, 3331, 3464
SnaBI TACGTA 1 cut(s) 2829
SpeI ACTAGT 1 cut(s) 1814
SphI GCATGC 1 cut(s) 2650
SsiI CCGC 5 cut(s) 26, 922, 1034, 1606, 1612
SspI AATATT 1 cut(s) 3912
SstI GAGCTC 2 cut(s) 1389, 2919
StyD4I CCNGG 3 cut(s) 423, 604, 3858
StyI CCWWGG 6 cut(s) 446, 666, 1102, 1529, 3224, 3625
TaiI ACGT 7 cut(s) 585, 1120, 2276, 2831, 3537, 3707, 3995
TaqII GACCGA 1 cut(s) 1386
TatI WGTACW 4 cut(s) 1346, 2391, 2887, 3165
TauI GCSGC 1 cut(s) 29
TscAI CASTG 7 cut(s) 195, 460, 649, 2007, 2469, 2721, 3005
TseFI GTSAC 7 cut(s) 709, 733, 845, 913, 1367, 2904, 3257
TseI GCWGC 8 cut(s) 43, 286, 1091, 1475, 2650, 3589, 3676, 3981
Tsp45I GTSAC 7 cut(s) 709, 733, 845, 913, 1367, 2904, 3257
TspGWI ACGGA 2 cut(s) 2505, 3314
TspRI CASTG 7 cut(s) 195, 460, 649, 2007, 2469, 2721, 3005
Tth111I GACNNNGTC 3 cut(s) 71, 979, 2080
Van91I CCANNNNNTGG 1 cut(s) 672
Vha464I CTTAAG 1 cut(s) 3464
VneI GTGCAC 1 cut(s) 2720
VpaK11BI GGWCC 5 cut(s) 450, 497, 837, 1643, 2426
XceI RCATGY 6 cut(s) 638, 846, 1019, 1946, 2218, 2650
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmaJI CCTAGG 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 3156
ZrmI AGTACT 2 cut(s) 2889, 3167
Zsp2I ATGCAT 3 cut(s) 1446, 2164, 2648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.