Rh1DG038900

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000070
Physical Location & Seq
Forward (+)
6251816 .. 6271608
19793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG038900.1

Sequence Viewer

Length: 1446 bp
ATGGCCCTGAAAAGGAGTAAGGATGTTAATCTTCGGAACAAGATTACAGAGCAAATTGAAGTCTTGGCCCAGAAAGGGACTAAGGATGTTAATCTTCAAAACAAGATCACAGTGGGAGAGAACTTTCTTGCGGCATTCGTTCAGCTGCTGCTGGACAGGTTAACGCCTCGGGAGATCCTCGGCTACTTTGGAAGCTTGGGAGGAGTTGGCGAAAAGCTGCAGAAATGGAGGGGAACACTGTCCGCAATTGCAGCGGTGCTTTCCGATGCTGTGGAGAAGCAGCTGACGAGCAAGGCAGTGGATCTGTGGCTGAATGACCTCAAACACTTGGCTTACGATATTGACGATCTACTCAACACCTTTTCTAATGAGATGTTAACATGCAAGCAGCTCAAGGTTGACCAAACTGGCACGAGCAAGGTACGAGGCTTCTTTACAAAAGTTCCTCGCAAAGTTAAGTTCAATTTCAAGATGAGCTCCAAAATAGACGAGTTATCTAATCGTTTGCAAGACATATTTGACCGGAAAGAGAAGCTCGGTTTGAAATATATTGAGCATACCACTGCTATAGCATCATCATCACAAAGGACACCAAGTTCGTATGTGCTAGATGGACCTGTGGTTGGAAGAGATGAAGACACAAGAAAGATTGTTGAATTGTTGTCCAGAGATGTTGATCCTTCTTCTCCAACCAAATACCAAGTAGTTGCCATTGTTGGTTGCATTTTGCATCAGCTGAAGCAGCAGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCGTACTATACATCAGATTGGTAGAGAATGAGAGCGATCCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTGGTATCAACGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCAGCTATGGGATTTATATCCCTACATGGGTTTGTTTTGCTCTACAAATGGAATACAGTGAACTTCGTGTCCTCTGTGGTCTGATAGGAGAGGCTGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAAGCTATAGGTGCTCATTGGGTGATGTTACTAATGATGATGCCTGCTTTGAAAAAGCCCTTGAAGTTTCAAACGATAGGTCAGCTTGGGCTAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTTACTCGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCGTGGAATAATATTGCTTGTTTGGATGTATTCTTCCTCTTGTGCTGTCTTGCACGTCCATTCTATGCATCATTATTTTTTATTCCGTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

481

Amino Acids

53.86

Weight (kDa)

5.26

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 46 - 135 5.1e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00360 FvH4_7g00850 FvH4_7g02400 FvH4_7g02430 FvH4_7g02450 FvH4_7g25671 FvH4_7g25680 FvH4_7g25683 FvH4_7g26980 FvH4_7g27330 FvH4_7g27355 FvH4_7g27610 FvH4_7g27642 FvH4_7g27890 FvH4_7g27891 FvH4_7g27891 FvH4_7g27891 FvH4_7g28110 FvH4_7g28390
malus_domestica MD00G1070800.v1.1 MD00G1168000.v1.1 MD00G1168300.v1.1 MD00G1168700.v1.1 MD02G1293100.v1.1 MD02G1293200.v1.1 MD02G1314300.v1.1 MD03G1009000.v1.1 MD03G1009400.v1.1 MD03G1042300.v1.1 MD03G1042400.v1.1 MD07G1033600.v1.1 MD07G1033700.v1.1 MD07G1033900.v1.1 MD11G1011400.v1.1 MD11G1011700.v1.1 MD11G1029800.v1.1 MD11G1029900.v1.1 MD11G1030300.v1.1 MD11G1030400.v1.1 MD11G1030500.v1.1 MD11G1031300.v1.1 MD11G1031600.v1.1 MD11G1032000.v1.1 MD11G1033200.v1.1 MD11G1033600.v1.1 MD11G1033800.v1.1 MD11G1033900.v1.1 MD11G1034100.v1.1 MD11G1034400.v1.1 MD11G1040600.v1.1 MD11G1041100.v1.1 MD11G1043100.v1.1 MD11G1043500.v1.1 MD11G1044500.v1.1 MD11G1045100.v1.1 MD11G1045600.v1.1
prunus_persica Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022400_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022500_v2.0.a1 Prupe.2G022900_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023500_v2.0.a1 Prupe.2G023600_v2.0.a1 Prupe.2G028000_v2.0.a1 Prupe.2G030200_v2.0.a1 Prupe.2G067600_v2.0.a1 Prupe.8G117900_v2.0.a1
pyrus_communis pycom02g26350 pycom03g03270 pycom07g02370 pycom11g00750 pycom11g00790 pycom11g02340 pycom11g02370 pycom11g02380 pycom11g02390 pycom11g02410 pycom11g02460 pycom11g02470 pycom11g02500 pycom11g02510 pycom11g02520 pycom11g02530 pycom11g02580 pycom11g02590 pycom11g02680 pycom11g02710 pycom11g02720 pycom11g02730 pycom11g02750 pycom11g02760 pycom11g02770 pycom11g03690 pycom13g25120 pycom13g25130 pycom13g25140 pycom13g25170 pycom13g25180 pycom13g25190 pycom13g25210
rosa_chinensis RchiOBHm_Chr1g0315001 RchiOBHm_Chr1g0315411 RchiOBHm_Chr1g0317951 RchiOBHm_Chr1g0319741 RchiOBHm_Chr1g0319841 RchiOBHm_Chr1g0319911 RchiOBHm_Chr1g0319991 RchiOBHm_Chr1g0320001 RchiOBHm_Chr1g0320021 RchiOBHm_Chr1g0320081 RchiOBHm_Chr1g0320111 RchiOBHm_Chr1g0320131 RchiOBHm_Chr1g0320161 RchiOBHm_Chr1g0320171 RchiOBHm_Chr1g0320241 RchiOBHm_Chr1g0320281 RchiOBHm_Chr1g0320411 RchiOBHm_Chr1g0320461 RchiOBHm_Chr1g0320551 RchiOBHm_Chr1g0320581 RchiOBHm_Chr1g0320661 RchiOBHm_Chr1g0320891 RchiOBHm_Chr1g0320971 RchiOBHm_Chr1g0321021 RchiOBHm_Chr1g0321031 RchiOBHm_Chr1g0321091 RchiOBHm_Chr1g0321351 RchiOBHm_Chr1g0321481 RchiOBHm_Chr1g0321491 RchiOBHm_Chr1g0327521 RchiOBHm_Chr1g0328061 RchiOBHm_Chr1g0334991 RchiOBHm_Chr1g0373781 RchiOBHm_Chr1g0373891 RchiOBHm_Chr1g0374841 RchiOBHm_Chr2g0131111 RchiOBHm_Chr2g0131121 RchiOBHm_Chr4g0408901 RchiOBHm_Chr5g0041691 RchiOBHm_Chr7g0237021
rosa_laevigata RLG00000019168 RLG00000030456 RLG00000030460 RLG00000030571
rosa_multiflora Rmu_co7963468.1_g000001 Rmu_co7991248.1_g000001 Rmu_co8195256.1_g000001 Rmu_co8312199.1_g000001 Rmu_co8349215.1_g000001 Rmu_co8351041.1_g000001 Rmu_co8422719.1_g000001 Rmu_co8450711.1_g000001 Rmu_co8465555.1_g000001 Rmu_co8489965.1_g000001 Rmu_sc0000087.1_g000014 Rmu_sc0000272.1_g000015 Rmu_sc0000724.1_g000006 Rmu_sc0000724.1_g000021 Rmu_sc0000724.1_g000022 Rmu_sc0000861.1_g000024 Rmu_sc0001049.1_g000006 Rmu_sc0001049.1_g000007 Rmu_sc0001512.1_g000001 Rmu_sc0002022.1_g000004 Rmu_sc0002063.1_g000011 Rmu_sc0002131.1_g000024 Rmu_sc0002337.1_g000012 Rmu_sc0002341.1_g000005 Rmu_sc0002539.1_g000117 Rmu_sc0002745.1_g000005 Rmu_sc0002745.1_g000006 Rmu_sc0003145.1_g000002 Rmu_sc0003199.1_g000007 Rmu_sc0003270.1_g000039 Rmu_sc0003270.1_g000040 Rmu_sc0003423.1_g000001 Rmu_sc0003423.1_g000002 Rmu_sc0003629.1_g000067 Rmu_sc0004039.1_g000002 Rmu_sc0004555.1_g000001 Rmu_sc0004555.1_g000005 Rmu_sc0004555.1_g000006 Rmu_sc0004947.1_g000025 Rmu_sc0004947.1_g000026 Rmu_sc0005255.1_g000025 Rmu_sc0007977.1_g000016 Rmu_sc0008752.1_g000005 Rmu_sc0009236.1_g000004 Rmu_sc0009236.1_g000008 Rmu_sc0009236.1_g000009 Rmu_sc0009236.1_g000010 Rmu_sc0011424.1_g000036 Rmu_sc0013413.1_g000001 Rmu_sc0013735.1_g000002 Rmu_sc0015304.1_g000002 Rmu_sc0015304.1_g000003 Rmu_sc0015585.1_g000001 Rmu_sc0018410.1_g000001 Rmu_sc0022723.1_g000001 Rmu_sc0022723.1_g000002 Rmu_sc0022724.1_g000001 Rmu_sc0023430.1_g000001 Rmu_sc0026053.1_g000001 Rmu_sc0026429.1_g000002 Rmu_sc0026647.1_g000001 Rmu_sc0031359.1_g000001 Rmu_ssc0000042.1_g000040 Rmu_ssc0000081.1_g000001 Rmu_ssc0000300.1_g000011
rosa_roxburghii Rroxscaffold_160G00433620 Rroxscaffold_160G00433990 Rroxscaffold_1G00038820 Rroxscaffold_2G00113190 Rroxscaffold_4G00283240 Rroxscaffold_4G00283930 Rroxscaffold_4G00284010 Rroxscaffold_4G00322600 Rroxscaffold_4G00327710 Rroxscaffold_4G00328100 Rroxscaffold_4G00328130 Rroxscaffold_4G00331590 Rroxscaffold_5G00353280
rosa_rugosa Rorug01G0004200 Rorug01G0018800 Rorug01G0018900 Rorug01G0029900 Rorug01G0030000 Rorug01G0030000 Rorug01G0030000 Rorug01G0030200 Rorug01G0030300 Rorug01G0030800 Rorug01G0032400 Rorug01G0032900 Rorug01G0055800 Rorug01G0067600 Rorug01G0067700 Rorug01G0067800 Rorug01G0067900 Rorug01G0068000 Rorug01G0379500 Rorug01G0379600 Rorug01G0379600 Rorug01G0385200 Rorug01G0385300 Rorug02G0295100 Rorug04G0088500 Rorug04G0088600 Rorug05G0194900 Rorug07G0301400
rosa_samantha Rh1AG014800 Rh1AG015200 Rh1AG030500 Rh1AG041800 Rh1AG042300 Rh1AG042700 Rh1AG042800 Rh1AG042900 Rh1AG045000 Rh1AG085100 Rh1AG085200 Rh1AG388600 Rh1AG396700 Rh1AG396900 Rh1BG007300 Rh1BG039200 Rh1BG039600 Rh1BG042800 Rh1BG067300 Rh1BG109700 Rh1BG109900 Rh1BG354000 Rh1CG043800 Rh1CG044400 Rh1DG008600 Rh1DG022900 Rh1DG023400 Rh1DG023600 Rh1DG023900 Rh1DG024100 Rh1DG024400 Rh1DG024500 Rh1DG025500 Rh1DG025700 Rh1DG026500 Rh1DG026800 Rh1DG038900 Rh1DG048800 Rh1DG049300 Rh1DG051700 Rh1DG052000 Rh1DG146200 Rh1DG383500 Rh2BG354900 Rh2CG333600 Rh4BG149600 Rh4BG149700 Rh4CG160600
rosa_wichuraiana Rw0G001100 Rw0G001130 Rw0G001180 Rw0G012580 Rw1G003480 Rw1G003540 Rw1G003600 Rw1G003640 Rw1G003670 Rw1G003750 Rw1G003940 Rw1G006650 Rw1G034550 Rw1G034560 Rw1G034650 Rw1G034660 Rw1G035170 Rw1G035190 Rw1G037060 Rw2G028210 Rw4G012540 Rw5G026370 Rw7G037900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 934
AciI CCGC 3 cut(s) 131, 243, 254
AclWI GGATC 6 cut(s) 169, 309, 671, 815, 892, 1328
AcsI RAATTY 1 cut(s) 1155
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 3 cut(s) 423, 789, 859
AfiI CCNNNNNNNGG 6 cut(s) 12, 75, 623, 1031, 1081, 1343
AjiI CACGTC 1 cut(s) 1406
AjnI CCWGG 3 cut(s) 823, 900, 1030
AloI GAACNNNNNNTCC 4 cut(s) 580, 612, 1107, 1139
Alw21I GWGCWC 3 cut(s) 479, 932, 1202
AlwI GGATC 6 cut(s) 169, 309, 671, 815, 892, 1328
AlwNI CAGNNNCTG 2 cut(s) 148, 748
Ama87I CYCGRG 2 cut(s) 168, 1317
AoxI GGCC 2 cut(s) 3, 66
ApeKI GCWGC 9 cut(s) 145, 148, 217, 251, 280, 388, 742, 745, 863
ApoI RAATTY 1 cut(s) 1155
ArsI GACNNNNNNTTYG 4 cut(s) 580, 612, 1250, 1282
AspS9I GGNCC 3 cut(s) 4, 67, 614
AsuHPI GGTGA 1 cut(s) 1220
AvaI CYCGRG 2 cut(s) 168, 1317
AvaII GGWCC 1 cut(s) 614
BanII GRGCYC 2 cut(s) 479, 1026
BauI CACGAG 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 3 cut(s) 479, 932, 1202
BbvI GCAGC 9 cut(s) 132, 135, 204, 263, 292, 400, 754, 757, 850
BccI CCATC 4 cut(s) 605, 894, 948, 1301
BceAI ACGGC 1 cut(s) 856
BciT130I CCWGG 3 cut(s) 825, 902, 1032
BfaI CTAG 2 cut(s) 608, 1304
BfmI CTRYAG 3 cut(s) 218, 567, 1192
Bme1390I CCNGG 3 cut(s) 825, 902, 1032
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 2 cut(s) 168, 1317
BmgBI CACGTC 1 cut(s) 1406
BmgT120I GGNCC 3 cut(s) 4, 67, 614
BmiI GGNNCC 1 cut(s) 966
BmrFI CCNGG 3 cut(s) 825, 902, 1032
BmsI GCATC 5 cut(s) 256, 581, 739, 1216, 1427
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 2 cut(s) 846, 1014
Bpu10I CCTNAGC 1 cut(s) 1278
BpuEI CTTGAG 1 cut(s) 377
BsaBI GATNNNNATC 4 cut(s) 27, 90, 675, 1070
BsaJI CCNNGG 2 cut(s) 167, 178
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 6 cut(s) 12, 75, 623, 1031, 1081, 1343
Bse1I ACTGG 1 cut(s) 412
Bse8I GATNNNNATC 4 cut(s) 27, 90, 675, 1070
BseBI CCWGG 3 cut(s) 825, 902, 1032
BseDI CCNNGG 2 cut(s) 167, 178
BseGI GGATG 3 cut(s) 28, 91, 1381
BseJI GATNNNNATC 4 cut(s) 27, 90, 675, 1070
BseLI CCNNNNNNNGG 6 cut(s) 12, 75, 623, 1031, 1081, 1343
BseMII CTCAG 1 cut(s) 1004
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 9 cut(s) 132, 135, 204, 263, 292, 400, 754, 757, 850
Bsh1236I CGCG 1 cut(s) 934
BshFI GGCC 2 cut(s) 5, 68
BsiHKAI GWGCWC 3 cut(s) 479, 932, 1202
BsiHKCI CYCGRG 2 cut(s) 168, 1317
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 6 cut(s) 12, 75, 623, 1031, 1081, 1343
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 2 cut(s) 134, 843
BsnI GGCC 2 cut(s) 5, 68
BsoBI CYCGRG 2 cut(s) 168, 1317
Bsp1286I GDGCHC 4 cut(s) 479, 932, 1026, 1202
Bsp143I GATC 8 cut(s) 105, 174, 301, 346, 676, 820, 897, 1333
BspACI CCGC 3 cut(s) 131, 243, 254
BspANI GGCC 2 cut(s) 5, 68
BspCNI CTCAG 1 cut(s) 1003
BspFNI CGCG 1 cut(s) 934
BspLI GGNNCC 1 cut(s) 966
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 6 cut(s) 169, 309, 671, 815, 892, 1328
BspQI GCTCTTC 1 cut(s) 920
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 167, 178
BssMI GATC 8 cut(s) 105, 174, 301, 346, 676, 820, 897, 1333
BssSI CACGAG 1 cut(s) 412
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 3 cut(s) 825, 902, 1032
Bst4CI ACNGT 3 cut(s) 112, 240, 1112
Bst6I CTCTTC 2 cut(s) 622, 920
BstC8I GCNNGC 3 cut(s) 386, 932, 1231
BstDEI CTNAG 4 cut(s) 81, 990, 1187, 1278
BstF5I GGATG 3 cut(s) 28, 91, 1381
BstFNI CGCG 1 cut(s) 934
BstKTI GATC 8 cut(s) 108, 177, 304, 349, 679, 823, 900, 1336
BstMBI GATC 8 cut(s) 105, 174, 301, 346, 676, 820, 897, 1333
BstMWI GCNNNNNNNGC 3 cut(s) 251, 742, 1197
BstNI CCWGG 3 cut(s) 825, 902, 1032
BstNSI RCATGY 2 cut(s) 384, 949
BstSCI CCNGG 3 cut(s) 823, 900, 1030
BstSFI CTRYAG 3 cut(s) 218, 567, 1192
BstUI CGCG 1 cut(s) 934
BstV1I GCAGC 9 cut(s) 132, 135, 204, 263, 292, 400, 754, 757, 850
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 2 cut(s) 174, 301
BstYI RGATCY 2 cut(s) 174, 301
BsuRI GGCC 2 cut(s) 5, 68
BtrI CACGTC 1 cut(s) 1406
BtsCI GGATG 3 cut(s) 28, 91, 1381
BtsI GCAGTG 3 cut(s) 303, 561, 900
BtsIMutI CAGTG 6 cut(s) 117, 236, 303, 561, 900, 1117
Cac8I GCNNGC 3 cut(s) 386, 932, 1231
CaiI CAGNNNCTG 2 cut(s) 148, 748
Cfr13I GGNCC 3 cut(s) 4, 67, 614
Csp6I GTAC 3 cut(s) 422, 788, 858
CviAII CATG 4 cut(s) 381, 938, 946, 1080
CviQI GTAC 3 cut(s) 422, 788, 858
DdeI CTNAG 4 cut(s) 81, 990, 1187, 1278
DpnI GATC 8 cut(s) 107, 176, 303, 348, 678, 822, 899, 1335
DpnII GATC 8 cut(s) 105, 174, 301, 346, 676, 820, 897, 1333
Eam1104I CTCTTC 2 cut(s) 622, 920
EarI CTCTTC 2 cut(s) 622, 920
Ecl136II GAGCTC 1 cut(s) 477
Eco24I GRGCYC 2 cut(s) 479, 1026
Eco47I GGWCC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 758
Eco88I CYCGRG 2 cut(s) 168, 1317
EcoICRI GAGCTC 1 cut(s) 477
EcoRII CCWGG 3 cut(s) 823, 900, 1030
EcoT22I ATGCAT 1 cut(s) 1420
EcoT38I GRGCYC 2 cut(s) 479, 1026
FaeI CATG 4 cut(s) 384, 941, 949, 1083
FaqI GGGAC 1 cut(s) 91
FatI CATG 4 cut(s) 380, 937, 945, 1079
FokI GGATG 3 cut(s) 35, 98, 1388
FriOI GRGCYC 2 cut(s) 479, 1026
FspBI CTAG 2 cut(s) 608, 1304
GsuI CTGGAG 2 cut(s) 846, 1014
HaeIII GGCC 2 cut(s) 5, 68
HapII CCGG 1 cut(s) 523
Hin1II CATG 4 cut(s) 384, 941, 949, 1083
HincII GTYRAC 3 cut(s) 162, 378, 400
HindII GTYRAC 3 cut(s) 162, 378, 400
HindIII AAGCTT 2 cut(s) 193, 757
HinfI GANTC 2 cut(s) 986, 1048
HpaI GTTAAC 2 cut(s) 162, 378
HpaII CCGG 1 cut(s) 523
HphI GGTGA 1 cut(s) 1220
Hpy166II GTNNAC 4 cut(s) 162, 378, 400, 1115
Hpy188I TCNGA 5 cut(s) 36, 265, 800, 838, 1137
Hpy188III TCNNGA 4 cut(s) 170, 469, 666, 1337
Hpy8I GTNNAC 4 cut(s) 162, 378, 400, 1115
HpyAV CCTTC 3 cut(s) 690, 923, 1291
HpyCH4III ACNGT 3 cut(s) 112, 240, 1112
HpyCH4IV ACGT 1 cut(s) 1405
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 742, 1197
HpyF3I CTNAG 4 cut(s) 81, 990, 1187, 1278
HpySE526I ACGT 1 cut(s) 1405
Hsp92II CATG 4 cut(s) 384, 941, 949, 1083
KspAI GTTAAC 2 cut(s) 162, 378
Kzo9I GATC 8 cut(s) 105, 174, 301, 346, 676, 820, 897, 1333
LguI GCTCTTC 1 cut(s) 920
LmnI GCTCC 2 cut(s) 482, 970
Lsp1109I GCAGC 9 cut(s) 132, 135, 204, 263, 292, 400, 754, 757, 850
LweI GCATC 5 cut(s) 256, 581, 739, 1216, 1427
MaeI CTAG 2 cut(s) 608, 1304
MaeII ACGT 1 cut(s) 1405
MaeIII GTNAC 2 cut(s) 765, 1213
MalI GATC 8 cut(s) 107, 176, 303, 348, 678, 822, 899, 1335
MboI GATC 8 cut(s) 105, 174, 301, 346, 676, 820, 897, 1333
MboII GAAGA 7 cut(s) 23, 86, 639, 647, 675, 937, 1375
MfeI CAATTG 2 cut(s) 246, 981
MflI RGATCY 2 cut(s) 174, 301
MhlI GDGCHC 4 cut(s) 479, 932, 1026, 1202
MluCI AATT 8 cut(s) 54, 246, 463, 656, 918, 981, 1155, 1172
MmeI TCCRAC 2 cut(s) 604, 713
Mph1103I ATGCAT 1 cut(s) 1420
MseI TTAA 7 cut(s) 27, 90, 161, 377, 456, 755, 1444
MspA1I CMGCKG 5 cut(s) 145, 254, 283, 736, 748
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 3 cut(s) 825, 902, 1032
MunI CAATTG 2 cut(s) 246, 981
Mva1269I GAATGC 2 cut(s) 134, 843
MvaI CCWGG 3 cut(s) 825, 902, 1032
MvnI CGCG 1 cut(s) 934
MwoI GCNNNNNNNGC 3 cut(s) 251, 742, 1197
NdeII GATC 8 cut(s) 105, 174, 301, 346, 676, 820, 897, 1333
NlaIII CATG 4 cut(s) 384, 941, 949, 1083
NlaIV GGNNCC 1 cut(s) 966
NmeAIII GCCGAG 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 1420
NspI RCATGY 2 cut(s) 384, 949
PciSI GCTCTTC 1 cut(s) 920
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 2 cut(s) 134, 843
PfeI GAWTC 2 cut(s) 986, 1048
PfoI TCCNGGA 2 cut(s) 823, 1030
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 3 cut(s) 823, 900, 1030
PspGI CCWGG 3 cut(s) 823, 900, 1030
PspN4I GGNNCC 1 cut(s) 966
PspPI GGNCC 3 cut(s) 4, 67, 614
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 2 cut(s) 148, 748
PsuI RGATCY 2 cut(s) 174, 301
PvuII CAGCTG 4 cut(s) 145, 283, 736, 748
RsaI GTAC 3 cut(s) 423, 789, 859
RsaNI GTAC 3 cut(s) 422, 788, 858
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 920
SaqAI TTAA 7 cut(s) 27, 90, 161, 377, 456, 755, 1444
Sau3AI GATC 8 cut(s) 105, 174, 301, 346, 676, 820, 897, 1333
Sau96I GGNCC 3 cut(s) 4, 67, 614
ScrFI CCNGG 3 cut(s) 825, 902, 1032
SduI GDGCHC 4 cut(s) 479, 932, 1026, 1202
SfaNI GCATC 5 cut(s) 256, 581, 739, 1216, 1427
SfcI CTRYAG 3 cut(s) 218, 567, 1192
SinI GGWCC 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 8 cut(s) 54, 246, 463, 656, 918, 981, 1155, 1172
SsiI CCGC 3 cut(s) 131, 243, 254
SspI AATATT 1 cut(s) 1363
SspMI CTAG 2 cut(s) 608, 1304
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 3 cut(s) 823, 900, 1030
TaaI ACNGT 3 cut(s) 112, 240, 1112
TaiI ACGT 1 cut(s) 1408
TaqI TCGA 1 cut(s) 975
TasI AATT 8 cut(s) 54, 246, 463, 656, 918, 981, 1155, 1172
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 986, 1048
Tru1I TTAA 7 cut(s) 27, 90, 161, 377, 456, 755, 1444
Tru9I TTAA 7 cut(s) 27, 90, 161, 377, 456, 755, 1444
TscAI CASTG 6 cut(s) 117, 243, 303, 568, 900, 1117
TseI GCWGC 9 cut(s) 145, 148, 217, 251, 280, 388, 742, 745, 863
TspDTI ATGAA 1 cut(s) 648
TspGWI ACGGA 2 cut(s) 775, 1425
TspRI CASTG 6 cut(s) 117, 243, 303, 568, 900, 1117
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 1 cut(s) 1155
XceI RCATGY 2 cut(s) 384, 949
XspI CTAG 2 cut(s) 608, 1304
Zsp2I ATGCAT 1 cut(s) 1420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.