Rh1DG026900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019101
Physical Location & Seq
Forward (+)
4092807 .. 4094248
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG026900.1

Sequence Viewer

Length: 417 bp
ATGTTTTTAAGATGTCTAGGAAACAGCTGCCTGTATAAGGATGAGAAAGCCATTAGGCAATGGACCATCTCGAGATCTGGTTTCTCTATTTTAAGGCTACAGTGCACTGTGTTATTCCGATGGTCTGTTGCATATGAAAACCGGGTGCTGGAGCTGTCAGGGCCACTGGAACTCTTACAGGGCGTTCGAGCAGAAGAATTTATGTGCAGTTGTTCAGGAAAGCATGATACTATCATCTTAACCGTATTTATAATTACTCGGTCAACAAATGCTATTCAATACAGAAAAGCCAAAGAATGTGTGTGCAACTGTTCAAGAGCCAAGGTACAAGAGGGTCATGCTAGCATAAAATCATCGACTGCCGGAGAGCAACGCCTGAATACATCTTTGGCCGTGTTCTATAGTATCAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.69

Weight (kDa)

9.28

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019101)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_160G00433630 Rroxscaffold_4G00328140
rosa_rugosa Rorug01G0055800
rosa_samantha Rh1BG039100 Rh1CG042700 Rh1DG023100 Rh1DG024800 Rh1DG026900
rosa_wichuraiana Rw1G003590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 37, 148
AgsI TTSAA 2 cut(s) 278, 315
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 2 cut(s) 27, 154
AluI AGCT 2 cut(s) 27, 154
Alw21I GWGCWC 1 cut(s) 107
Alw44I GTGCAC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 2 cut(s) 161, 390
ApaLI GTGCAC 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 63, 161
AsuC2I CCSGG 1 cut(s) 143
AsuNHI GCTAGC 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 14
BccI CCATC 2 cut(s) 74, 114
BceAI ACGGC 1 cut(s) 377
BcnI CCSGG 1 cut(s) 143
BfaI CTAG 2 cut(s) 17, 342
BfmI CTRYAG 2 cut(s) 98, 400
BglII AGATCT 1 cut(s) 74
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 63
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 63, 161
BmrFI CCNGG 1 cut(s) 143
BmtI GCTAGC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 148
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 37, 148
BseMI GCAATG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 2 cut(s) 163, 392
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 142, 363
BslI CCNNNNNNNGG 2 cut(s) 37, 148
BsnI GGCC 2 cut(s) 163, 392
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 74
BspANI GGCC 2 cut(s) 163, 392
BspOI GCTAGC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 4 cut(s) 102, 109, 244, 311
BstC8I GCNNGC 1 cut(s) 343
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 1 cut(s) 77
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 2 cut(s) 98, 400
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 2 cut(s) 163, 392
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 3 cut(s) 105, 107, 164
Cac8I GCNNGC 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 63, 161
Csp6I GTAC 1 cut(s) 326
CviAII CATG 2 cut(s) 224, 338
CviJI RGCY 8 cut(s) 27, 50, 97, 154, 163, 290, 320, 392
CviKI_1 RGCY 8 cut(s) 27, 50, 97, 154, 163, 290, 320, 392
CviQI GTAC 1 cut(s) 326
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
EaeI YGGCCR 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 70
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 227, 341
FaiI YATR 9 cut(s) 36, 133, 135, 203, 225, 251, 339, 347, 402
FatI CATG 2 cut(s) 223, 337
FauNDI CATATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 2 cut(s) 17, 342
GluI GCNGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 2 cut(s) 163, 392
HapII CCGG 2 cut(s) 142, 363
Hin1II CATG 2 cut(s) 227, 341
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HpaII CCGG 2 cut(s) 142, 363
Hpy166II GTNNAC 2 cut(s) 105, 264
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 4 cut(s) 70, 72, 216, 315
Hpy8I GTNNAC 2 cut(s) 105, 264
HpyCH4III ACNGT 4 cut(s) 102, 109, 244, 311
HpyCH4V TGCA 4 cut(s) 105, 131, 207, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92II CATG 2 cut(s) 227, 341
Kzo9I GATC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 151
Lsp1109I GCAGC 1 cut(s) 14
MaeI CTAG 2 cut(s) 17, 342
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 2 cut(s) 197, 252
MnlI CCTC 1 cut(s) 325
MseI TTAA 3 cut(s) 8, 92, 239
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 2 cut(s) 142, 363
MspR9I CCNGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 133
NdeII GATC 1 cut(s) 74
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 2 cut(s) 227, 341
PaeR7I CTCGAG 1 cut(s) 70
PkrI GCNGC 1 cut(s) 29
PsiI TTATAA 1 cut(s) 251
PspPI GGNCC 2 cut(s) 63, 161
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 27
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SaqAI TTAA 3 cut(s) 8, 92, 239
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 1 cut(s) 74
Sau96I GGNCC 2 cut(s) 63, 161
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 107
SetI ASST 3 cut(s) 29, 156, 327
SfcI CTRYAG 2 cut(s) 98, 400
Sfr274I CTCGAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 63
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 2 cut(s) 197, 252
SspMI CTAG 2 cut(s) 17, 342
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 4 cut(s) 102, 109, 244, 311
TaqI TCGA 3 cut(s) 71, 187, 356
TaqII GACCGA 1 cut(s) 249
TasI AATT 2 cut(s) 197, 252
Tru1I TTAA 3 cut(s) 8, 92, 239
Tru9I TTAA 3 cut(s) 8, 92, 239
TscAI CASTG 3 cut(s) 107, 112, 171
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 3 cut(s) 107, 112, 171
VneI GTGCAC 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 35
XapI RAATTY 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 70
XspI CTAG 2 cut(s) 17, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.