Rh1DG024800

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019101
Physical Location & Seq
Forward (+)
3912729 .. 3926571
13843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG024800.1

Sequence Viewer

Length: 834 bp
ATGACGAAGGTGTACGGAACAGGCGCGTACGATCTCAAGCGCCACCATGTTGCCGAGTACCCGGTGGAGCTGAACCACCAGCTCGGAGACAAGCCGGTGGAGGCTAAACCCGGTGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTGAGAGGGACCAGCTCACTATGACTGCCGCTGCCAATTGGTCCAAAGCCGGCGGGCAGGTGAAGAATGGTTTGTTTGCAACAGCTTGCATTGGTTCAATTGACAACCGAAATGATCTCTGTGAAAGATTGGCTGTACTTTCCCCTGAAGAATTGAAGGATTTGGTTTGTTCAAAGATAATAGGGGCAACAACTACTAGTACACGTTTTGGAAAGCTGTTAGGAATGGAAAGCTCAAGAATCTTTGTCTTCCCTTCTCGTTCTGGTTTGATTTCAAGATGTCTAGGAAACAGCTGCCTGTATATGGATGAGAAAGCCATTAGGCAATGGACCACCTCGAGATCTGGTTTCTCTATTTTAAGGCTACAGTGCACTGTGTTATTCCGATGGTCTGTTGCATATGAAAACCGGGTGCTGGAGCTGTTGGGGCCACTGGAACTCTTAAAGGGCGTTGGAGCAGAAGAATTTATGTGCAGTTGTTCAGGAAAGCATGATACTATCATCATCTTAGCCGTATTTATAATTACTCGGTCAAAAAATGCTATTCAATACAGAAAAGCCGAAGAATGTATGTGCAACTGTTCAAGAGCCGAGGTACAAGAGGGTCATGCTAGCATAAAATCATCGACTGCCGGAGAGCAACGCCTGAATACATCTTTGGCTGTGTTTTATAGTATCAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

277

Amino Acids

30.52

Weight (kDa)

8.61

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019101)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_160G00433630 Rroxscaffold_4G00328140
rosa_rugosa Rorug01G0055800
rosa_samantha Rh1BG039100 Rh1CG042700 Rh1DG023100 Rh1DG024800 Rh1DG026900
rosa_wichuraiana Rw1G003590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
AarI CACCTGC 1 cut(s) 196
Acc36I ACCTGC 1 cut(s) 196
AccII CGCG 1 cut(s) 26
AciI CCGC 3 cut(s) 116, 177, 201
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 6 cut(s) 14, 29, 59, 285, 349, 744
AfiI CCNNNNNNNGG 2 cut(s) 451, 562
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 6 cut(s) 246, 304, 321, 423, 695, 732
AhlI ACTAGT 1 cut(s) 344
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AluBI AGCT 9 cut(s) 70, 82, 129, 163, 233, 364, 381, 441, 568
AluI AGCT 9 cut(s) 70, 82, 129, 163, 233, 364, 381, 441, 568
Alw21I GWGCWC 2 cut(s) 131, 521
Alw26I GTCTC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 517
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 1 cut(s) 575
ApaLI GTGCAC 1 cut(s) 517
ApeKI GCWGC 3 cut(s) 121, 179, 441
ApoI RAATTY 1 cut(s) 611
AspLEI GCGC 3 cut(s) 26, 42, 121
AspS9I GGNCC 4 cut(s) 157, 189, 477, 575
AsuC2I CCSGG 3 cut(s) 62, 111, 557
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 758
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 3 cut(s) 157, 189, 477
BaeGI GKGCMC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 131, 521
BbvI GCAGC 3 cut(s) 108, 166, 428
BccI CCATC 1 cut(s) 528
BceAI ACGGC 1 cut(s) 644
BcnI CCSGG 3 cut(s) 62, 111, 557
BcoDI GTCTC 1 cut(s) 81
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 3 cut(s) 345, 431, 759
BfmI CTRYAG 1 cut(s) 512
BfoI RGCGCY 2 cut(s) 43, 122
BfuAI ACCTGC 1 cut(s) 196
BglII AGATCT 1 cut(s) 488
BisI GCNGC 5 cut(s) 117, 122, 177, 180, 442
BlsI GCNGC 5 cut(s) 118, 123, 178, 181, 443
Bme1390I CCNGG 3 cut(s) 62, 111, 557
Bme18I GGWCC 3 cut(s) 157, 189, 477
BmeT110I CYCGRG 1 cut(s) 484
BmgT120I GGNCC 4 cut(s) 157, 189, 477, 575
BmiI GGNNCC 2 cut(s) 158, 576
BmrFI CCNGG 3 cut(s) 62, 111, 557
BmtI GCTAGC 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 20, 367
BpuMI CCSGG 3 cut(s) 62, 111, 557
BsaJI CCNNGG 1 cut(s) 738
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 562
Bse118I RCCGGY 2 cut(s) 94, 197
Bse1I ACTGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 479
BseDI CCNNGG 1 cut(s) 738
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 451, 562
BseMI GCAATG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 3 cut(s) 108, 166, 428
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 577
BsiHKAI GWGCWC 2 cut(s) 131, 521
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 6 cut(s) 62, 95, 111, 198, 556, 780
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 451, 562
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 577
BsoBI CYCGRG 1 cut(s) 484
Bsp1286I GDGCHC 2 cut(s) 131, 521
Bsp143I GATC 3 cut(s) 31, 262, 488
BspACI CCGC 3 cut(s) 116, 177, 201
BspANI GGCC 1 cut(s) 577
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 158, 576
BspMI ACCTGC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 762
BsrDI GCAATG 1 cut(s) 479
BsrFI RCCGGY 2 cut(s) 94, 197
BsrI ACTGG 1 cut(s) 585
BssAI RCCGGY 2 cut(s) 94, 197
BssECI CCNNGG 1 cut(s) 738
BssMI GATC 3 cut(s) 31, 262, 488
Bst4CI ACNGT 3 cut(s) 516, 523, 728
BstC8I GCNNGC 4 cut(s) 199, 203, 235, 760
BstDEI CTNAG 1 cut(s) 655
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 3 cut(s) 26, 42, 121
BstKTI GATC 3 cut(s) 34, 265, 491
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 31, 262, 488
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstSCI CCNGG 3 cut(s) 60, 109, 555
BstSFI CTRYAG 1 cut(s) 512
BstSLI GKGCMC 1 cut(s) 521
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 3 cut(s) 108, 166, 428
BstV2I GAAGAC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BsuRI GGCC 1 cut(s) 577
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 3 cut(s) 519, 521, 578
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 4 cut(s) 199, 203, 235, 760
CfoI GCGC 3 cut(s) 26, 42, 121
Cfr10I RCCGGY 2 cut(s) 94, 197
Cfr13I GGNCC 4 cut(s) 157, 189, 477, 575
Csp6I GTAC 6 cut(s) 13, 28, 58, 284, 348, 743
CviAII CATG 3 cut(s) 47, 638, 755
CviQI GTAC 6 cut(s) 13, 28, 58, 284, 348, 743
DdeI CTNAG 1 cut(s) 655
DpnI GATC 3 cut(s) 33, 264, 490
DpnII GATC 3 cut(s) 31, 262, 488
Ecl136II GAGCTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 3 cut(s) 157, 189, 477
Eco53kI GAGCTC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 484
EcoICRI GAGCTC 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 3 cut(s) 50, 641, 758
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 46, 637, 754
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 117, 122, 177, 180, 442
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 117, 122, 177, 180, 442
FspBI CTAG 3 cut(s) 345, 431, 759
GlaI GCGC 3 cut(s) 25, 41, 120
GluI GCNGC 5 cut(s) 117, 122, 177, 180, 442
GsuI CTGGAG 1 cut(s) 584
HaeII RGCGCY 2 cut(s) 43, 122
HaeIII GGCC 1 cut(s) 577
HapII CCGG 6 cut(s) 62, 95, 111, 198, 556, 780
HhaI GCGC 3 cut(s) 26, 42, 121
Hin1II CATG 3 cut(s) 50, 641, 758
Hin6I GCGC 3 cut(s) 24, 40, 119
HinP1I GCGC 3 cut(s) 24, 40, 119
HinfI GANTC 1 cut(s) 387
HpaII CCGG 6 cut(s) 62, 95, 111, 198, 556, 780
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 3 cut(s) 13, 350, 519
Hpy188I TCNGA 3 cut(s) 86, 145, 533
Hpy188III TCNNGA 5 cut(s) 384, 423, 486, 630, 732
Hpy8I GTNNAC 3 cut(s) 13, 350, 519
HpyAV CCTTC 2 cut(s) 298, 411
HpyCH4III ACNGT 3 cut(s) 516, 523, 728
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 6 cut(s) 227, 237, 519, 545, 621, 723
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 1 cut(s) 655
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 3 cut(s) 50, 641, 758
HspAI GCGC 3 cut(s) 24, 40, 119
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 31, 262, 488
LmnI GCTCC 3 cut(s) 67, 565, 602
Lsp1109I GCAGC 3 cut(s) 108, 166, 428
MaeI CTAG 3 cut(s) 345, 431, 759
MaeII ACGT 1 cut(s) 352
MalI GATC 3 cut(s) 33, 264, 490
MboI GATC 3 cut(s) 31, 262, 488
MboII GAAGA 5 cut(s) 223, 308, 388, 620, 722
MfeI CAATTG 2 cut(s) 184, 246
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 2 cut(s) 131, 521
MluCI AATT 5 cut(s) 184, 246, 299, 611, 669
MmeI TCCRAC 2 cut(s) 123, 580
MnlI CCTC 5 cut(s) 94, 147, 493, 733, 742
MroNI GCCGGC 1 cut(s) 197
MseI TTAA 2 cut(s) 506, 590
MspA1I CMGCKG 2 cut(s) 179, 441
MspI CCGG 6 cut(s) 62, 95, 111, 198, 556, 780
MspR9I CCNGG 3 cut(s) 62, 111, 557
MunI CAATTG 2 cut(s) 184, 246
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 574
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 3 cut(s) 62, 111, 557
NdeI CATATG 1 cut(s) 547
NdeII GATC 3 cut(s) 31, 262, 488
NgoMIV GCCGGC 1 cut(s) 197
NheI GCTAGC 1 cut(s) 758
NlaIII CATG 3 cut(s) 50, 641, 758
NlaIV GGNNCC 2 cut(s) 158, 576
NmeAIII GCCGAG 3 cut(s) 79, 150, 763
PaeR7I CTCGAG 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 387
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 5 cut(s) 118, 123, 178, 181, 443
PsiI TTATAA 1 cut(s) 668
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 158, 576
PspPI GGNCC 4 cut(s) 157, 189, 477, 575
PsuI RGATCY 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 441
RsaI GTAC 6 cut(s) 14, 29, 59, 285, 349, 744
RsaNI GTAC 6 cut(s) 13, 28, 58, 284, 348, 743
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 506, 590
SatI GCNGC 5 cut(s) 117, 122, 177, 180, 442
Sau3AI GATC 3 cut(s) 31, 262, 488
Sau96I GGNCC 4 cut(s) 157, 189, 477, 575
ScrFI CCNGG 3 cut(s) 62, 111, 557
SduI GDGCHC 2 cut(s) 131, 521
SfcI CTRYAG 1 cut(s) 512
Sfr274I CTCGAG 1 cut(s) 484
SinI GGWCC 3 cut(s) 157, 189, 477
SlaI CTCGAG 1 cut(s) 484
SmlI CTYRAG 3 cut(s) 35, 382, 484
SmoI CTYRAG 3 cut(s) 35, 382, 484
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 5 cut(s) 184, 246, 299, 611, 669
SsiI CCGC 3 cut(s) 116, 177, 201
SspMI CTAG 3 cut(s) 345, 431, 759
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 3 cut(s) 60, 109, 555
TaaI ACNGT 3 cut(s) 516, 523, 728
TaiI ACGT 1 cut(s) 355
TaqI TCGA 3 cut(s) 131, 485, 773
TaqII GACCGA 1 cut(s) 666
TasI AATT 5 cut(s) 184, 246, 299, 611, 669
TatI WGTACW 2 cut(s) 283, 347
TauI GCSGC 2 cut(s) 119, 179
TfiI GAWTC 1 cut(s) 387
Tru1I TTAA 2 cut(s) 506, 590
Tru9I TTAA 2 cut(s) 506, 590
TscAI CASTG 3 cut(s) 521, 526, 585
TseI GCWGC 3 cut(s) 121, 179, 441
TspDTI ATGAA 1 cut(s) 564
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 3 cut(s) 521, 526, 585
VneI GTGCAC 1 cut(s) 517
VpaK11BI GGWCC 3 cut(s) 157, 189, 477
XapI RAATTY 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 484
XspI CTAG 3 cut(s) 345, 431, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.