Rroxscaffold_4G00328140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019101
Physical Location & Seq
Forward (+)
61040347 .. 61041782
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328140.1

Sequence Viewer

Length: 429 bp
ATGATGTTTTTAAGATGTCTAGGAAACAGCTGCCTGTATAAGGATGAGAAAGCCATTAGACGATGGACCACCTCGAGATCTGGTTTCTCTATTTTAAGGCTACAGTGCACTGTGTTATTCCGATGGTCTGTTGCATATGAAAACCGGGTGCTGGAGCTGTCGGGGCCACTGGAACTCTTAAAGGGCGTTAGAGCAGAAGAATGTATGTGCAGTTGTTCAGGAAAGCATGATACTATCATCATCTTAGTCGTATTTATAATTACTCGGTCAAAAAATGCTATTCAATACAGAAAAGCCAAAGAATGTATGTGCAACTGTTCAAGAGCCGAGGTACAAGAGGCCGAGAGTCATGCTAGCATAAAATCATTGACTGCCGGAGGGCAATGCCTGAATACATCTTTGGCCGTGTTTTATAGTATCAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.09

Weight (kDa)

9.11

Isoelectric Point (pI)

60.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019101)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_160G00433630 Rroxscaffold_4G00328140
rosa_rugosa Rorug01G0055800
rosa_samantha Rh1BG039100 Rh1CG042700 Rh1DG023100 Rh1DG024800 Rh1DG026900
rosa_wichuraiana Rw1G003590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 402
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 40, 151
AgsI TTSAA 2 cut(s) 284, 321
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 2 cut(s) 30, 157
AluI AGCT 2 cut(s) 30, 157
Alw21I GWGCWC 1 cut(s) 110
Alw44I GTGCAC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 3 cut(s) 164, 339, 402
ApaLI GTGCAC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 66, 164
AsuC2I CCSGG 1 cut(s) 146
AsuNHI GCTAGC 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 73
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 57, 117
BceAI ACGGC 1 cut(s) 389
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BcnI CCSGG 1 cut(s) 146
BfaI CTAG 2 cut(s) 20, 354
BfmI CTRYAG 1 cut(s) 101
BglII AGATCT 1 cut(s) 77
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 66
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 66, 164
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 146
BmtI GCTAGC 1 cut(s) 357
BpmI CTGGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 151
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 389
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 40, 151
BseMI GCAATG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 174
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 3 cut(s) 166, 341, 404
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 2 cut(s) 145, 375
BslI CCNNNNNNNGG 2 cut(s) 40, 151
BsnI GGCC 3 cut(s) 166, 341, 404
BsoBI CYCGRG 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 77
BspANI GGCC 3 cut(s) 166, 341, 404
BspLI GGNNCC 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 389
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 77
Bst4CI ACNGT 3 cut(s) 105, 112, 317
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 244
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 3 cut(s) 166, 341, 404
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 3 cut(s) 108, 110, 167
Cac8I GCNNGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 66, 164
Csp6I GTAC 1 cut(s) 332
CviAII CATG 2 cut(s) 227, 350
CviJI RGCY 9 cut(s) 30, 53, 100, 157, 166, 296, 326, 341, 404
CviKI_1 RGCY 9 cut(s) 30, 53, 100, 157, 166, 296, 326, 341, 404
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 1 cut(s) 244
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 38
FaeI CATG 2 cut(s) 230, 353
FatI CATG 2 cut(s) 226, 349
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 2 cut(s) 20, 354
GluI GCNGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 3 cut(s) 166, 341, 404
HapII CCGG 2 cut(s) 145, 375
Hin1II CATG 2 cut(s) 230, 353
HinfI GANTC 1 cut(s) 346
HpaII CCGG 2 cut(s) 145, 375
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 3 cut(s) 75, 219, 321
Hpy8I GTNNAC 1 cut(s) 108
HpyCH4III ACNGT 3 cut(s) 105, 112, 317
HpyCH4V TGCA 4 cut(s) 108, 134, 210, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 244
Hsp92II CATG 2 cut(s) 230, 353
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 9 cut(s) 47, 66, 137, 155, 158, 204, 388, 401, 406
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 20, 354
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 209
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 355
MnlI CCTC 4 cut(s) 82, 322, 331, 371
MseI TTAA 3 cut(s) 11, 95, 179
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 2 cut(s) 145, 375
MspR9I CCNGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 146
NdeI CATATG 1 cut(s) 136
NdeII GATC 1 cut(s) 77
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 2 cut(s) 230, 353
NlaIV GGNNCC 1 cut(s) 165
NmeAIII GCCGAG 2 cut(s) 352, 367
PaeR7I CTCGAG 1 cut(s) 73
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PsiI TTATAA 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 66, 164
PsuI RGATCY 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SaqAI TTAA 3 cut(s) 11, 95, 179
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 2 cut(s) 66, 164
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 110
SetI ASST 4 cut(s) 32, 74, 159, 333
SfcI CTRYAG 1 cut(s) 101
Sfr274I CTCGAG 1 cut(s) 73
SinI GGWCC 1 cut(s) 66
SlaI CTCGAG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 1 cut(s) 258
SspMI CTAG 2 cut(s) 20, 354
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 105, 112, 317
TaqI TCGA 1 cut(s) 74
TaqII GACCGA 1 cut(s) 255
TasI AATT 1 cut(s) 258
Tru1I TTAA 3 cut(s) 11, 95, 179
Tru9I TTAA 3 cut(s) 11, 95, 179
TscAI CASTG 3 cut(s) 110, 115, 174
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 3 cut(s) 110, 115, 174
VneI GTGCAC 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 66
XagI CCTNNNNNAGG 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 73
XspI CTAG 2 cut(s) 20, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.