Rw1G003590

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
6723835 .. 6727119
3285 bp
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UTR
Exon/CDS
Intron
Rw1G003590.1

Sequence Viewer

Length: 219 bp
ATGTGCAGTTGTTCAGGAAAGCATGATACTATCATCATCTTAGCCGTATTTATAATTACTCGGTCAAAAAATGCTATTCAATACAGAAAAGCCGAAGAATGTATGTGCAACTGTTCAAGAGCCGAGGTACAAGAGGGTCATGCTAGCATAAAATCATCGACTGCCGGAGAGCAACGCCTGAATACATCTTTGGCTGTGTTTGATAGTATCAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.96

Weight (kDa)

8.36

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019101)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
AfaI GTAC 1 cut(s) 129
AgsI TTSAA 2 cut(s) 80, 117
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AsuNHI GCTAGC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 29
BfaI CTAG 1 cut(s) 144
BmtI GCTAGC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 128
CviAII CATG 2 cut(s) 23, 140
CviJI RGCY 4 cut(s) 44, 92, 122, 194
CviKI_1 RGCY 4 cut(s) 44, 92, 122, 194
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 40
FaeI CATG 2 cut(s) 26, 143
FaiI YATR 5 cut(s) 24, 53, 104, 141, 149
FatI CATG 2 cut(s) 22, 139
FspBI CTAG 1 cut(s) 144
HapII CCGG 1 cut(s) 165
Hin1II CATG 2 cut(s) 26, 143
HpaII CCGG 1 cut(s) 165
Hpy188III TCNNGA 2 cut(s) 15, 117
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 6, 108
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 2 cut(s) 26, 143
LpnPI CCDG 3 cut(s) 178, 191, 196
MaeI CTAG 1 cut(s) 144
MboII GAAGA 1 cut(s) 107
MluCI AATT 1 cut(s) 54
MnlI CCTC 2 cut(s) 118, 127
MspI CCGG 1 cut(s) 165
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 2 cut(s) 26, 143
NmeAIII GCCGAG 1 cut(s) 148
PsiI TTATAA 1 cut(s) 53
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SetI ASST 1 cut(s) 129
Sse9I AATT 1 cut(s) 54
SspMI CTAG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 158
TaqII GACCGA 1 cut(s) 51
TasI AATT 1 cut(s) 54
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.